Wall clock time and date at job start Wed Apr 1 2020 02:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.49629 * 2 1 4 4 C 1.53199 * 109.49639 * 239.93414 * 2 1 3 5 5 N 1.46920 * 108.77528 * 185.41007 * 4 2 1 6 6 C 1.34772 * 120.63253 * 233.58588 * 5 4 2 7 7 O 1.21361 * 120.00053 * 353.07729 * 6 5 4 8 8 C 1.49308 * 120.00131 * 173.07202 * 6 5 4 9 9 O 1.21404 * 119.99971 * 353.36700 * 8 6 5 10 10 N 1.34773 * 120.00126 * 173.36625 * 8 6 5 11 11 C 1.40294 * 120.00152 * 180.02562 * 10 8 6 12 12 C 1.40722 * 126.10020 * 0.02562 * 11 10 8 13 13 N 1.30873 * 108.37901 * 180.02562 * 12 11 10 14 14 N 1.40069 * 108.43637 * 0.02562 * 13 12 11 15 15 C 1.37298 * 126.05807 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00171 * 179.97438 * 15 14 13 17 17 C 1.39000 * 119.99769 * 359.97372 * 15 14 13 18 18 N 1.31289 * 120.00468 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00066 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47104 * 89.99907 * 19 17 15 21 21 H 1.48498 * 109.46980 * 210.00004 * 19 17 15 22 22 H 1.48500 * 109.46505 * 329.99854 * 19 17 15 23 23 C 1.35792 * 126.09867 * 179.71761 * 11 10 8 24 24 C 1.46931 * 118.73731 * 53.61265 * 5 4 2 25 25 C 1.53193 * 108.77103 * 306.38720 * 24 5 4 26 26 C 1.53035 * 109.49935 * 120.09857 * 2 1 3 27 27 F 1.39901 * 109.46059 * 301.33483 * 26 2 1 28 28 F 1.39902 * 109.46269 * 61.29623 * 26 2 1 29 29 H 1.09004 * 109.46703 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46840 * 300.06269 * 1 2 3 31 31 H 1.08995 * 109.47342 * 60.06554 * 1 2 3 32 32 H 1.08994 * 109.58611 * 305.20363 * 4 2 1 33 33 H 1.09004 * 109.58311 * 65.48299 * 4 2 1 34 34 H 0.97005 * 120.00123 * 359.97438 * 10 8 6 35 35 H 1.08002 * 125.80906 * 0.04620 * 12 11 10 36 36 H 0.96998 * 120.00471 * 179.97438 * 18 17 15 37 37 H 1.07993 * 126.25620 * 359.97438 * 23 11 10 38 38 H 1.08997 * 109.58855 * 66.17489 * 24 5 4 39 39 H 1.08999 * 109.58595 * 186.46098 * 24 5 4 40 40 H 1.09007 * 109.49088 * 174.58819 * 25 24 5 41 41 H 1.08996 * 109.50133 * 294.64879 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2498 5 7 3.5045 -0.8288 -1.1699 6 6 4.2810 -0.3858 -2.1785 7 8 3.7736 -0.0108 -3.2152 8 6 5.7654 -0.3564 -2.0204 9 8 6.2666 -0.6160 -0.9456 10 7 6.5489 -0.0416 -3.0709 11 6 7.9437 -0.0145 -2.9225 12 6 8.6575 -0.2929 -1.7421 13 7 9.9356 -0.1651 -1.9929 14 7 10.0890 0.1989 -3.3368 15 6 11.2796 0.4274 -3.9812 16 1 11.2842 0.7042 -5.0251 17 6 12.4791 0.3027 -3.2901 18 7 12.4737 -0.0332 -2.0209 19 14 14.0991 0.6144 -4.1666 20 1 14.4622 2.0487 -4.0403 21 1 15.1624 -0.2214 -3.5535 22 1 13.9600 0.2635 -5.6028 23 6 8.8460 0.2794 -3.8938 24 6 4.1053 -1.4267 0.0303 25 6 3.5708 -0.6953 1.2657 26 6 2.0408 -0.7234 1.2481 27 9 1.5498 -0.0838 2.3913 28 9 1.5992 -2.0508 1.2310 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.6052 -1.7212 -1.2985 33 1 1.7615 -0.1586 -2.1391 34 1 6.1484 0.1654 -3.9298 35 1 8.2243 -0.5659 -0.7912 36 1 13.3107 -0.1206 -1.5386 37 1 8.6209 0.5338 -4.9189 38 1 3.8375 -2.4818 0.0860 39 1 5.1897 -1.3268 -0.0155 40 1 3.9335 -1.1903 2.1666 41 1 3.9164 0.3384 1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810439013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:17 Heat of formation + Delta-G solvation = -84.091772 kcal Electronic energy + Delta-G solvation = -29950.636772 eV Core-core repulsion = 25310.422494 eV Total energy + Delta-G solvation = -4640.214278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.05631 -48.01859 -42.24691 -41.34991 -39.64669 -38.49689 -36.19995 -35.10604 -34.50418 -32.83852 -32.28315 -29.95075 -28.43725 -27.27082 -26.57968 -24.54208 -23.90227 -22.95051 -21.87135 -21.33020 -20.92263 -19.45851 -18.76544 -18.52542 -18.05120 -17.61968 -17.45225 -17.39353 -16.92883 -16.56666 -16.54699 -15.85052 -15.74081 -15.46778 -15.11764 -14.98925 -14.81744 -14.59518 -14.33623 -14.19029 -14.06551 -13.91632 -13.49981 -13.46468 -13.28330 -13.12116 -12.92387 -12.89579 -12.80306 -12.51407 -12.22229 -12.16550 -12.08554 -11.94851 -11.44185 -11.06585 -10.84966 -10.19067 -10.12852 -9.96123 -8.62458 -8.48178 -6.25587 0.19216 1.15652 1.29857 1.42285 1.58960 1.71571 2.00061 2.09952 2.34245 2.51975 2.69049 2.81765 3.03492 3.08570 3.21846 3.29560 3.36924 3.62007 4.01676 4.07984 4.19613 4.39166 4.40667 4.45166 4.50262 4.53532 4.67034 4.76675 4.82536 4.87404 4.95755 4.98887 4.99482 5.08175 5.22929 5.27827 5.51082 5.85430 5.92813 6.19375 6.36526 6.65080 6.71899 7.05045 7.41835 7.64492 8.50796 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002242 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.686451 B =12486.109482 C =13141.352401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 H 0.108 0.892 4 C 0.114 3.886 5 N -0.581 5.581 6 C 0.527 3.473 7 O -0.535 6.535 8 C 0.490 3.510 9 O -0.523 6.523 10 N -0.576 5.576 11 C -0.058 4.058 12 C -0.043 4.043 13 N -0.308 5.308 14 N -0.164 5.164 15 C -0.353 4.353 16 H 0.141 0.859 17 C -0.004 4.004 18 N -0.820 5.820 19 Si 1.017 2.983 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.246 1.246 23 C -0.074 4.074 24 C 0.051 3.949 25 C -0.166 4.166 26 C 0.288 3.712 27 F -0.206 7.206 28 F -0.202 7.202 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.424 0.576 35 H 0.181 0.819 36 H 0.278 0.722 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.990 -0.513 1.586 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 H 0.126 0.874 4 C -0.008 4.008 5 N -0.313 5.313 6 C 0.310 3.690 7 O -0.412 6.412 8 C 0.272 3.728 9 O -0.403 6.403 10 N -0.219 5.219 11 C -0.164 4.164 12 C -0.219 4.219 13 N -0.140 5.140 14 N 0.068 4.932 15 C -0.484 4.484 16 H 0.158 0.842 17 C -0.216 4.216 18 N -0.448 5.448 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.169 1.169 23 C -0.225 4.225 24 C -0.070 4.070 25 C -0.205 4.205 26 C 0.252 3.748 27 F -0.187 7.187 28 F -0.183 7.183 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.262 0.738 35 H 0.198 0.802 36 H 0.087 0.913 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.130 0.870 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.635 -0.631 2.463 18.807 hybrid contribution -0.450 0.104 -0.434 0.633 sum -19.084 -0.527 2.030 19.199 Atomic orbital electron populations 1.21776 0.90743 1.03719 1.04236 1.22507 0.99836 1.01382 0.92132 0.87422 1.21924 0.77506 1.02741 0.98603 1.47982 1.07063 1.58094 1.18162 1.19637 0.86970 0.78477 0.83933 1.90738 1.75046 1.48090 1.27365 1.20163 0.88033 0.80126 0.84432 1.90212 1.74307 1.49730 1.26064 1.42099 1.03150 1.63206 1.13480 1.17255 0.82408 1.21415 0.95363 1.24320 0.90700 1.07355 0.99480 1.78172 1.16570 1.24676 0.94543 1.44836 1.04814 1.37463 1.06065 1.20622 0.80923 1.49578 0.97244 0.84198 1.26837 1.04224 0.94378 0.96173 1.70364 1.29398 1.35367 1.09635 0.84613 0.74157 0.78716 0.78889 1.18952 1.20171 1.16861 1.22019 0.84329 1.16172 0.99959 1.23243 1.05769 0.96960 0.81027 1.22867 0.91061 1.05201 1.01323 1.21272 0.93835 0.75603 0.84140 1.92990 1.89787 1.81968 1.53942 1.92976 1.91231 1.37303 1.96811 0.91372 0.91281 0.89375 0.88800 0.87132 0.73845 0.80193 0.91259 0.79631 0.89710 0.82551 0.87033 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.95 71.98 0.64 -1.06 16 2 C -0.14 -2.09 2.53 -10.72 -0.03 -2.12 16 3 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.11 1.91 5.49 86.37 0.47 2.39 16 5 N -0.58 -12.74 2.97 -820.66 -2.44 -15.18 16 6 C 0.53 14.27 7.74 87.23 0.67 14.94 16 7 O -0.54 -15.56 15.94 -3.28 -0.05 -15.61 16 8 C 0.49 15.76 7.74 87.23 0.68 16.44 16 9 O -0.52 -18.43 10.24 -3.41 -0.03 -18.47 16 10 N -0.58 -19.54 5.45 -305.33 -1.66 -21.20 16 11 C -0.06 -2.51 6.90 37.83 0.26 -2.25 16 12 C -0.04 -2.14 10.84 85.44 0.93 -1.21 16 13 N -0.31 -17.57 10.39 -56.43 -0.59 -18.15 16 14 N -0.16 -8.73 3.73 -189.98 -0.71 -9.44 16 15 C -0.35 -18.01 10.25 84.02 0.86 -17.15 16 16 H 0.14 6.20 7.83 -2.91 -0.02 6.18 16 17 C 0.00 -0.20 5.50 84.96 0.47 0.27 16 18 N -0.82 -45.61 11.81 21.66 0.26 -45.35 16 19 Si 1.02 37.33 29.55 68.60 2.03 39.36 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 21 H -0.28 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.25 -8.20 7.11 99.48 0.71 -7.50 16 23 C -0.07 -3.27 11.50 83.41 0.96 -2.31 16 24 C 0.05 1.07 6.06 86.36 0.52 1.59 16 25 C -0.17 -3.03 5.62 30.67 0.17 -2.86 16 26 C 0.29 5.19 1.63 30.62 0.05 5.24 16 27 F -0.21 -4.19 16.50 44.97 0.74 -3.45 16 28 F -0.20 -3.99 15.63 44.97 0.70 -3.29 16 29 H 0.07 0.79 7.83 -2.38 -0.02 0.77 16 30 H 0.07 0.83 7.78 -2.39 -0.02 0.81 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.41 7.92 -2.39 -0.02 1.39 16 33 H 0.11 1.86 7.06 -2.39 -0.02 1.84 16 34 H 0.42 12.05 8.31 -92.70 -0.77 11.28 16 35 H 0.18 8.62 5.92 -2.91 -0.02 8.60 16 36 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.19 6.56 8.06 -2.91 -0.02 6.54 16 38 H 0.08 1.63 7.92 -2.39 -0.02 1.61 16 39 H 0.16 4.08 3.78 -79.04 -0.30 3.78 16 40 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.21 347.57 4.95 -62.26 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.05 Total: 36.62 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.66 Total: 11.91 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -5.14 Total: -109.32 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.09 Total: -34.08 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 1.44 Total: -6.74 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -67.21 4.95 -62.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810439013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.834 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds