Wall clock time and date at job start Wed Apr 1 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.52044 * 2 1 4 4 C 1.53202 * 109.49396 * 120.07477 * 2 1 3 5 5 N 1.46922 * 108.77192 * 174.58645 * 4 2 1 6 6 C 1.34775 * 120.62780 * 126.41514 * 5 4 2 7 7 O 1.21364 * 120.00284 * 351.33528 * 6 5 4 8 8 C 1.49309 * 119.99966 * 171.33015 * 6 5 4 9 9 O 1.21404 * 120.00122 * 353.23889 * 8 6 5 10 10 N 1.34778 * 120.00080 * 173.23466 * 8 6 5 11 11 C 1.40290 * 120.00037 * 180.02562 * 10 8 6 12 12 C 1.40730 * 126.09996 * 359.68542 * 11 10 8 13 13 N 1.30880 * 108.37230 * 179.81504 * 12 11 10 14 14 N 1.40061 * 108.44002 * 0.45045 * 13 12 11 15 15 C 1.37287 * 126.05552 * 179.71265 * 14 13 12 16 16 H 1.08004 * 120.00158 * 179.97438 * 15 14 13 17 17 C 1.39007 * 120.00475 * 359.97438 * 15 14 13 18 18 N 1.31285 * 119.99749 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00245 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47257 * 60.00087 * 19 17 15 21 21 H 1.48503 * 109.47040 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47304 * 299.99711 * 19 17 15 23 23 C 1.35789 * 126.10461 * 180.02562 * 11 10 8 24 24 C 1.46924 * 118.74042 * 306.39537 * 5 4 2 25 25 C 1.53190 * 108.78072 * 53.60970 * 24 5 4 26 26 C 1.53040 * 109.49862 * 239.91441 * 2 1 3 27 27 F 1.39903 * 109.46007 * 298.70376 * 26 2 1 28 28 F 1.39901 * 109.45804 * 58.67663 * 26 2 1 29 29 H 1.09004 * 109.47518 * 180.08396 * 1 2 3 30 30 H 1.09006 * 109.47522 * 300.08174 * 1 2 3 31 31 H 1.09003 * 109.47330 * 60.08427 * 1 2 3 32 32 H 1.08996 * 109.58737 * 294.37399 * 4 2 1 33 33 H 1.09004 * 109.58176 * 54.80482 * 4 2 1 34 34 H 0.96996 * 119.99931 * 359.97438 * 10 8 6 35 35 H 1.08001 * 125.81026 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00033 * 179.97438 * 18 17 15 37 37 H 1.08003 * 126.24609 * 359.97438 * 23 11 10 38 38 H 1.09005 * 109.58764 * 293.81809 * 24 5 4 39 39 H 1.09007 * 109.70254 * 173.46565 * 24 5 4 40 40 H 1.08999 * 109.50115 * 185.41680 * 25 24 5 41 41 H 1.08999 * 109.49963 * 65.30959 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 1.2498 5 7 3.5045 -0.8291 1.1698 6 6 4.2809 -0.3863 2.1785 7 8 3.7890 0.2447 3.0910 8 6 5.7464 -0.6721 2.1734 9 8 6.2190 -1.4050 1.3288 10 7 6.5447 -0.1163 3.1063 11 6 7.9217 -0.3844 3.1012 12 6 8.6014 -1.2147 2.1907 13 7 9.8727 -1.2144 2.5018 14 7 10.0539 -0.3964 3.6241 15 6 11.2462 -0.1447 4.2565 16 1 11.2736 0.5055 5.1184 17 6 12.4182 -0.7267 3.7875 18 7 12.3849 -1.5174 2.7401 19 14 14.0405 -0.3836 4.6475 20 1 13.9568 -0.8338 6.0602 21 1 15.1315 -1.1175 3.9574 22 1 14.3231 1.0738 4.6083 23 6 8.8356 0.1057 3.9778 24 6 4.1052 -1.4267 -0.0305 25 6 3.5709 -0.6951 -1.2658 26 6 2.0408 -0.7232 -1.2483 27 9 1.5992 -2.0506 -1.2314 28 9 1.5499 -0.0831 -2.3913 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8908 32 1 1.7637 -0.1578 2.1390 33 1 1.6052 -1.7216 1.2982 34 1 6.1672 0.4696 3.7809 35 1 8.1511 -1.7569 1.3723 36 1 13.2027 -1.9232 2.4125 37 1 8.6348 0.7718 4.8039 38 1 3.8375 -2.4818 -0.0865 39 1 5.1898 -1.3267 0.0127 40 1 3.9335 -1.1899 -2.1669 41 1 3.9159 0.3388 -1.2540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810439014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:21 Heat of formation + Delta-G solvation = -67.896294 kcal Electronic energy + Delta-G solvation = -29903.357258 eV Core-core repulsion = 25263.845268 eV Total energy + Delta-G solvation = -4639.511989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.25057 -47.20498 -40.90929 -39.70887 -38.28757 -37.44353 -34.72268 -33.73628 -33.21984 -31.98698 -30.39625 -28.28329 -27.50976 -26.07104 -25.04079 -23.30825 -23.09609 -21.23867 -20.81385 -19.78953 -19.56943 -17.85875 -17.70999 -17.47167 -17.04427 -16.71112 -16.34958 -15.83838 -15.60023 -15.34724 -15.20449 -14.49841 -14.43003 -14.05200 -14.00615 -13.76260 -13.52556 -13.47412 -13.33715 -13.16838 -13.07218 -12.91916 -12.58122 -12.42358 -12.11723 -11.79998 -11.73162 -11.55746 -11.45624 -11.31258 -11.17152 -10.93606 -10.67461 -10.61293 -10.34768 -9.29651 -9.06528 -8.99010 -8.87950 -8.20069 -6.86623 -6.65943 -4.33854 1.47703 2.30933 2.89463 3.00200 3.04210 3.17604 3.38028 3.53991 3.61443 3.74948 3.82725 3.98387 4.05465 4.28373 4.36217 4.45326 4.72678 4.80243 4.87443 4.92810 4.94033 5.11574 5.17890 5.25858 5.36331 5.42568 5.55474 5.62237 5.76159 5.87441 6.08108 6.15451 6.27431 6.65661 6.81838 6.88249 6.95313 7.10152 7.56547 7.74869 7.97663 8.10388 8.37579 8.61313 9.24200 9.52682 10.29645 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.002209 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.116054 B =12670.725638 C =13256.909200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 H 0.105 0.895 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.520 3.480 7 O -0.525 6.525 8 C 0.484 3.516 9 O -0.515 6.515 10 N -0.576 5.576 11 C -0.074 4.074 12 C -0.024 4.024 13 N -0.261 5.261 14 N -0.136 5.136 15 C -0.321 4.321 16 H 0.118 0.882 17 C 0.047 3.953 18 N -0.766 5.766 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.077 4.077 24 C 0.071 3.929 25 C -0.174 4.174 26 C 0.290 3.710 27 F -0.196 7.196 28 F -0.200 7.200 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.179 0.821 36 H 0.277 0.723 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.365 2.819 -4.668 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 H 0.123 0.877 4 C -0.008 4.008 5 N -0.325 5.325 6 C 0.304 3.696 7 O -0.401 6.401 8 C 0.266 3.734 9 O -0.395 6.395 10 N -0.217 5.217 11 C -0.179 4.179 12 C -0.200 4.200 13 N -0.091 5.091 14 N 0.097 4.903 15 C -0.454 4.454 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.392 5.392 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.228 4.228 24 C -0.051 4.051 25 C -0.213 4.213 26 C 0.254 3.746 27 F -0.177 7.177 28 F -0.181 7.181 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.167 0.833 38 H 0.098 0.902 39 H 0.178 0.822 40 H 0.122 0.878 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.987 2.033 -5.226 17.888 hybrid contribution -0.619 0.718 0.697 1.177 sum -17.606 2.751 -4.529 18.386 Atomic orbital electron populations 1.21777 0.92229 1.03384 1.03431 1.22511 0.98684 1.01666 0.93417 0.87677 1.21749 0.79237 1.01695 0.98138 1.47904 1.06144 1.60020 1.18423 1.20257 0.87998 0.79114 0.82270 1.90730 1.75277 1.38271 1.35789 1.19579 0.86526 0.83575 0.83710 1.90366 1.74587 1.37730 1.36780 1.42162 1.05963 1.44598 1.29004 1.17244 0.81485 1.13374 1.05842 1.24155 0.91368 1.02617 1.01850 1.78279 1.14574 1.14608 1.01667 1.44567 1.04271 1.24961 1.16455 1.19895 0.81763 1.30877 1.12852 0.86424 1.25672 1.00412 0.95121 0.95925 1.70189 1.29290 1.21489 1.18277 0.85862 0.79443 0.79257 0.79442 1.19055 1.20060 1.19064 1.21310 0.86054 1.10468 1.05007 1.22937 1.04895 0.96783 0.80438 1.23016 0.91292 1.05097 1.01906 1.21138 0.93803 0.75810 0.83860 1.92990 1.91166 1.36815 1.96775 1.93001 1.89756 1.81854 1.53523 0.91481 0.90920 0.91299 0.87396 0.89960 0.75481 0.80476 0.91222 0.83320 0.90231 0.82239 0.87848 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 2 C -0.14 -1.21 2.53 -90.50 -0.23 -1.44 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.11 1.09 5.52 -3.71 -0.02 1.07 16 5 N -0.59 -6.99 2.97 -173.33 -0.52 -7.51 16 6 C 0.52 7.47 7.73 -11.65 -0.09 7.38 16 7 O -0.52 -8.15 15.93 5.48 0.09 -8.06 16 8 C 0.48 8.10 7.70 -11.65 -0.09 8.01 16 9 O -0.51 -9.30 10.32 5.45 0.06 -9.24 16 10 N -0.58 -10.17 5.45 -10.45 -0.06 -10.23 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 C -0.02 -0.59 10.85 -17.02 -0.18 -0.78 16 13 N -0.26 -7.21 10.39 30.81 0.32 -6.89 16 14 N -0.14 -3.59 3.73 -11.40 -0.04 -3.63 16 15 C -0.32 -8.18 10.25 -14.82 -0.15 -8.33 16 16 H 0.12 2.66 7.83 -52.48 -0.41 2.25 16 17 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -20.62 11.81 55.50 0.66 -19.97 16 19 Si 0.94 18.24 29.55 -169.99 -5.02 13.22 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 23 C -0.08 -1.73 11.49 -16.38 -0.19 -1.92 16 24 C 0.07 0.78 5.77 -3.71 -0.02 0.76 16 25 C -0.17 -1.63 5.62 -26.61 -0.15 -1.78 16 26 C 0.29 2.81 1.63 -26.69 -0.04 2.76 16 27 F -0.20 -2.11 15.64 2.25 0.04 -2.08 16 28 F -0.20 -2.14 16.49 2.25 0.04 -2.10 16 29 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.11 1.05 7.00 -51.93 -0.36 0.68 16 33 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 34 H 0.41 6.23 8.31 -40.82 -0.34 5.89 16 35 H 0.18 4.15 5.92 -52.49 -0.31 3.84 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.15 2.81 8.06 -52.48 -0.42 2.38 16 38 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 39 H 0.16 2.10 4.32 -54.76 -0.24 1.86 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -30.67 347.82 -5.26 -35.93 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.54 Total: 11.41 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.51 Total: 3.90 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.36 Total: -48.22 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.14 Total: -17.30 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.07 Total: -4.18 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.67 -5.26 -35.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810439014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.969 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds