Wall clock time and date at job start Wed Apr 1 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.52044 * 2 1 4 4 C 1.53202 * 109.49396 * 120.07477 * 2 1 3 5 5 N 1.46922 * 108.77192 * 174.58645 * 4 2 1 6 6 C 1.34775 * 120.62780 * 126.41514 * 5 4 2 7 7 O 1.21364 * 120.00284 * 351.33528 * 6 5 4 8 8 C 1.49309 * 119.99966 * 171.33015 * 6 5 4 9 9 O 1.21404 * 120.00122 * 353.23889 * 8 6 5 10 10 N 1.34778 * 120.00080 * 173.23466 * 8 6 5 11 11 C 1.40290 * 120.00037 * 180.02562 * 10 8 6 12 12 C 1.40730 * 126.09996 * 359.68542 * 11 10 8 13 13 N 1.30880 * 108.37230 * 179.81504 * 12 11 10 14 14 N 1.40061 * 108.44002 * 0.45045 * 13 12 11 15 15 C 1.37287 * 126.05552 * 179.71265 * 14 13 12 16 16 H 1.08004 * 120.00158 * 179.97438 * 15 14 13 17 17 C 1.39007 * 120.00475 * 359.97438 * 15 14 13 18 18 N 1.31285 * 119.99749 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00245 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47257 * 60.00087 * 19 17 15 21 21 H 1.48503 * 109.47040 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47304 * 299.99711 * 19 17 15 23 23 C 1.35789 * 126.10461 * 180.02562 * 11 10 8 24 24 C 1.46924 * 118.74042 * 306.39537 * 5 4 2 25 25 C 1.53190 * 108.78072 * 53.60970 * 24 5 4 26 26 C 1.53040 * 109.49862 * 239.91441 * 2 1 3 27 27 F 1.39903 * 109.46007 * 298.70376 * 26 2 1 28 28 F 1.39901 * 109.45804 * 58.67663 * 26 2 1 29 29 H 1.09004 * 109.47518 * 180.08396 * 1 2 3 30 30 H 1.09006 * 109.47522 * 300.08174 * 1 2 3 31 31 H 1.09003 * 109.47330 * 60.08427 * 1 2 3 32 32 H 1.08996 * 109.58737 * 294.37399 * 4 2 1 33 33 H 1.09004 * 109.58176 * 54.80482 * 4 2 1 34 34 H 0.96996 * 119.99931 * 359.97438 * 10 8 6 35 35 H 1.08001 * 125.81026 * 0.02562 * 12 11 10 36 36 H 0.96996 * 120.00033 * 179.97438 * 18 17 15 37 37 H 1.08003 * 126.24609 * 359.97438 * 23 11 10 38 38 H 1.09005 * 109.58764 * 293.81809 * 24 5 4 39 39 H 1.09007 * 109.70254 * 173.46565 * 24 5 4 40 40 H 1.08999 * 109.50115 * 185.41680 * 25 24 5 41 41 H 1.08999 * 109.49963 * 65.30959 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 1.2498 5 7 3.5045 -0.8291 1.1698 6 6 4.2809 -0.3863 2.1785 7 8 3.7890 0.2447 3.0910 8 6 5.7464 -0.6721 2.1734 9 8 6.2190 -1.4050 1.3288 10 7 6.5447 -0.1163 3.1063 11 6 7.9217 -0.3844 3.1012 12 6 8.6014 -1.2147 2.1907 13 7 9.8727 -1.2144 2.5018 14 7 10.0539 -0.3964 3.6241 15 6 11.2462 -0.1447 4.2565 16 1 11.2736 0.5055 5.1184 17 6 12.4182 -0.7267 3.7875 18 7 12.3849 -1.5174 2.7401 19 14 14.0405 -0.3836 4.6475 20 1 13.9568 -0.8338 6.0602 21 1 15.1315 -1.1175 3.9574 22 1 14.3231 1.0738 4.6083 23 6 8.8356 0.1057 3.9778 24 6 4.1052 -1.4267 -0.0305 25 6 3.5709 -0.6951 -1.2658 26 6 2.0408 -0.7232 -1.2483 27 9 1.5992 -2.0506 -1.2314 28 9 1.5499 -0.0831 -2.3913 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8908 32 1 1.7637 -0.1578 2.1390 33 1 1.6052 -1.7216 1.2982 34 1 6.1672 0.4696 3.7809 35 1 8.1511 -1.7569 1.3723 36 1 13.2027 -1.9232 2.4125 37 1 8.6348 0.7718 4.8039 38 1 3.8375 -2.4818 -0.0865 39 1 5.1898 -1.3267 0.0127 40 1 3.9335 -1.1899 -2.1669 41 1 3.9159 0.3388 -1.2540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810439014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:20 Heat of formation + Delta-G solvation = -87.754880 kcal Electronic energy + Delta-G solvation = -29904.218391 eV Core-core repulsion = 25263.845268 eV Total energy + Delta-G solvation = -4640.373122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.05528 -48.01864 -42.22632 -41.34939 -39.64482 -38.47778 -36.18129 -35.09972 -34.51921 -32.86248 -32.28392 -29.94517 -28.43862 -27.26126 -26.57794 -24.54163 -23.90697 -22.93127 -21.86246 -21.32577 -20.91260 -19.43810 -18.78361 -18.52378 -18.03794 -17.61937 -17.46025 -17.38328 -16.91153 -16.70370 -16.48866 -15.81070 -15.63013 -15.44264 -15.09072 -14.97687 -14.77412 -14.69611 -14.33642 -14.25191 -13.95893 -13.94679 -13.49775 -13.48816 -13.27876 -13.11616 -12.90238 -12.88549 -12.81623 -12.48791 -12.29026 -12.18120 -12.13051 -11.91506 -11.43993 -11.04813 -10.84969 -10.21623 -10.12952 -10.04628 -8.61677 -8.48053 -6.25567 0.20528 1.15541 1.30939 1.42061 1.57415 1.71835 1.99361 2.10303 2.34039 2.51425 2.69071 2.82001 3.02394 3.08590 3.21192 3.30510 3.37946 3.60530 4.01455 4.06234 4.19901 4.39336 4.40639 4.44495 4.49341 4.53576 4.66344 4.75235 4.82663 4.88062 4.95727 4.98966 4.99992 5.08340 5.23357 5.27604 5.43559 5.83136 5.92579 6.19201 6.36770 6.64594 6.71892 7.04682 7.41919 7.64460 8.50766 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.002209 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.116054 B =12670.725638 C =13256.909200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.582 5.582 6 C 0.528 3.472 7 O -0.534 6.534 8 C 0.487 3.513 9 O -0.527 6.527 10 N -0.578 5.578 11 C -0.057 4.057 12 C -0.044 4.044 13 N -0.309 5.309 14 N -0.164 5.164 15 C -0.353 4.353 16 H 0.141 0.859 17 C -0.004 4.004 18 N -0.820 5.820 19 Si 1.018 2.982 20 H -0.254 1.254 21 H -0.278 1.278 22 H -0.254 1.254 23 C -0.075 4.075 24 C 0.072 3.928 25 C -0.171 4.171 26 C 0.288 3.712 27 F -0.203 7.203 28 F -0.205 7.205 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.423 0.577 35 H 0.180 0.820 36 H 0.278 0.722 37 H 0.187 0.813 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 3.946 -3.851 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 H 0.128 0.872 4 C -0.008 4.008 5 N -0.315 5.315 6 C 0.311 3.689 7 O -0.412 6.412 8 C 0.270 3.730 9 O -0.406 6.406 10 N -0.222 5.222 11 C -0.163 4.163 12 C -0.220 4.220 13 N -0.140 5.140 14 N 0.069 4.931 15 C -0.485 4.485 16 H 0.158 0.842 17 C -0.216 4.216 18 N -0.448 5.448 19 Si 0.836 3.164 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.178 1.178 23 C -0.226 4.226 24 C -0.049 4.049 25 C -0.209 4.209 26 C 0.252 3.748 27 F -0.184 7.184 28 F -0.186 7.186 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.261 0.739 35 H 0.197 0.803 36 H 0.088 0.912 37 H 0.204 0.796 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.592 3.168 -4.420 19.371 hybrid contribution -0.397 0.345 0.340 0.626 sum -18.988 3.513 -4.081 19.737 Atomic orbital electron populations 1.21779 0.90817 1.03680 1.04251 1.22497 0.99796 1.01445 0.91992 0.87197 1.21953 0.77288 1.02662 0.98906 1.47971 1.07142 1.58692 1.17677 1.19669 0.86705 0.79626 0.82929 1.90736 1.74979 1.39064 1.36381 1.20157 0.87706 0.82452 0.82686 1.90398 1.75427 1.37818 1.37004 1.42094 1.04330 1.45621 1.30117 1.17256 0.83334 1.11497 1.04260 1.24309 0.91241 1.03670 1.02750 1.78170 1.16214 1.16317 1.03288 1.44819 1.05583 1.25947 1.16787 1.20590 0.82139 1.31864 1.13860 0.84191 1.26845 1.04252 0.94249 0.96272 1.70360 1.30320 1.23510 1.20590 0.84669 0.73907 0.79467 0.78312 1.17834 1.20262 1.17793 1.22013 0.85085 1.09914 1.05538 1.22826 1.03766 0.97404 0.80906 1.22981 0.91313 1.05334 1.01292 1.21265 0.93767 0.75607 0.84197 1.92981 1.91232 1.37352 1.96811 1.92993 1.89791 1.81920 1.53906 0.91461 0.89389 0.91234 0.87034 0.88846 0.73893 0.80307 0.91250 0.79620 0.89683 0.84142 0.86805 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.95 71.98 0.64 -1.01 16 2 C -0.14 -1.98 2.53 -10.71 -0.03 -2.01 16 3 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.11 1.88 5.52 86.37 0.48 2.36 16 5 N -0.58 -12.69 2.97 -820.64 -2.44 -15.13 16 6 C 0.53 14.31 7.73 87.23 0.67 14.98 16 7 O -0.53 -15.48 15.93 -3.29 -0.05 -15.53 16 8 C 0.49 15.89 7.70 87.23 0.67 16.56 16 9 O -0.53 -18.99 10.32 -3.41 -0.04 -19.02 16 10 N -0.58 -19.80 5.45 -305.32 -1.66 -21.46 16 11 C -0.06 -2.49 6.90 37.83 0.26 -2.23 16 12 C -0.04 -2.22 10.85 85.44 0.93 -1.30 16 13 N -0.31 -17.69 10.39 -56.43 -0.59 -18.28 16 14 N -0.16 -8.75 3.73 -189.98 -0.71 -9.46 16 15 C -0.35 -18.12 10.25 84.02 0.86 -17.26 16 16 H 0.14 6.21 7.83 -2.91 -0.02 6.19 16 17 C 0.00 -0.20 5.50 84.96 0.47 0.27 16 18 N -0.82 -45.79 11.81 21.66 0.26 -45.53 16 19 Si 1.02 37.40 29.55 68.60 2.03 39.43 16 20 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 21 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 23 C -0.07 -3.33 11.49 83.41 0.96 -2.37 16 24 C 0.07 1.51 5.77 86.36 0.50 2.01 16 25 C -0.17 -2.90 5.62 30.67 0.17 -2.73 16 26 C 0.29 4.98 1.63 30.62 0.05 5.03 16 27 F -0.20 -3.96 15.64 44.97 0.70 -3.26 16 28 F -0.21 -3.98 16.49 44.97 0.74 -3.24 16 29 H 0.07 0.76 7.84 -2.38 -0.02 0.75 16 30 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.80 7.77 -2.39 -0.02 0.78 16 32 H 0.11 1.85 7.00 -2.39 -0.02 1.83 16 33 H 0.09 1.40 7.92 -2.39 -0.02 1.38 16 34 H 0.42 12.15 8.31 -92.71 -0.77 11.38 16 35 H 0.18 8.70 5.92 -2.91 -0.02 8.68 16 36 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.19 6.61 8.06 -2.91 -0.02 6.59 16 38 H 0.08 1.71 7.92 -2.38 -0.02 1.69 16 39 H 0.14 3.62 4.32 -47.32 -0.20 3.42 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -67.99 347.82 5.02 -62.97 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.14 Total: 36.21 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.64 Total: 12.30 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.14 Total: -109.86 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.09 Total: -34.56 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.44 Total: -6.49 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Total: -67.99 5.02 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810439014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.787 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds