Wall clock time and date at job start Wed Apr 1 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.75181 * 2 1 4 4 C 1.53371 * 109.60581 * 239.57185 * 2 1 3 5 5 N 1.46958 * 108.63658 * 190.83577 * 4 2 1 6 6 C 1.34778 * 120.59665 * 235.20932 * 5 4 2 7 7 O 1.21594 * 119.99543 * 4.75111 * 6 5 4 8 8 C 1.47563 * 120.00307 * 184.75812 * 6 5 4 9 9 C 1.39757 * 120.13427 * 31.07148 * 8 6 5 10 10 C 1.37915 * 119.87579 * 179.97438 * 9 8 6 11 11 F 1.35107 * 119.92654 * 179.97438 * 10 9 8 12 12 C 1.38940 * 120.15259 * 359.97438 * 10 9 8 13 13 F 1.35094 * 119.87345 * 179.97438 * 12 10 9 14 14 C 1.38459 * 120.26375 * 359.97438 * 12 10 9 15 15 C 1.38211 * 120.11894 * 359.78775 * 14 12 10 16 16 F 1.35094 * 120.07233 * 180.25516 * 15 14 12 17 17 C 1.46965 * 118.81590 * 55.22323 * 5 4 2 18 18 C 1.53818 * 108.57586 * 304.65202 * 17 5 4 19 19 H 1.08997 * 109.76031 * 289.93889 * 18 17 5 20 20 C 1.53003 * 109.69238 * 169.28612 * 18 17 5 21 21 N 1.46963 * 108.40147 * 49.63748 * 18 17 5 22 22 C 1.36930 * 120.59921 * 124.75379 * 21 18 17 23 23 H 1.08008 * 120.00090 * 299.35947 * 22 21 18 24 24 C 1.38809 * 120.00310 * 119.35479 * 22 21 18 25 25 N 1.31624 * 119.99553 * 330.66641 * 24 22 21 26 26 Si 1.86800 * 120.00332 * 150.66198 * 24 22 21 27 27 H 1.48499 * 109.47041 * 270.00309 * 26 24 22 28 28 H 1.48502 * 109.46816 * 30.00365 * 26 24 22 29 29 H 1.48502 * 109.47154 * 150.00051 * 26 24 22 30 30 H 1.09006 * 109.46745 * 306.81482 * 1 2 3 31 31 H 1.09001 * 109.47476 * 66.81625 * 1 2 3 32 32 H 1.09003 * 109.47447 * 186.82106 * 1 2 3 33 33 H 1.09009 * 109.61105 * 310.57712 * 4 2 1 34 34 H 1.08996 * 109.61362 * 70.91444 * 4 2 1 35 35 H 1.07992 * 120.05746 * 359.95314 * 9 8 6 36 36 H 1.07994 * 119.93806 * 180.02562 * 14 12 10 37 37 H 1.08999 * 109.61030 * 64.51878 * 17 5 4 38 38 H 1.08997 * 109.61687 * 184.86648 * 17 5 4 39 39 H 1.08996 * 109.47186 * 304.39499 * 20 18 17 40 40 H 1.09001 * 109.46985 * 64.39395 * 20 18 17 41 41 H 1.08999 * 109.47165 * 184.39352 * 20 18 17 42 42 H 0.97002 * 119.99718 * 175.05511 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4906 -0.9491 -1.0990 6 6 4.3491 -0.5135 -2.0423 7 8 3.9392 0.1401 -2.9821 8 6 5.7864 -0.8299 -1.9346 9 6 6.1995 -2.0193 -1.3282 10 6 7.5442 -2.3099 -1.2309 11 9 7.9447 -3.4593 -0.6444 12 6 8.4880 -1.4234 -1.7346 13 9 9.8037 -1.7134 -1.6358 14 6 8.0854 -0.2437 -2.3375 15 6 6.7406 0.0562 -2.4453 16 9 6.3487 1.2051 -3.0384 17 6 3.9840 -1.6502 0.0947 18 6 3.4697 -0.9135 1.3433 19 1 3.9730 0.0488 1.4367 20 6 3.7383 -1.7604 2.5889 21 7 2.0232 -0.7012 1.1938 22 6 1.1511 -1.1437 2.1522 23 1 1.0941 -2.1966 2.3858 24 6 0.3402 -0.2390 2.8236 25 7 0.7464 0.9996 3.0057 26 14 -1.3276 -0.7794 3.4686 27 1 -2.3595 -0.5506 2.4256 28 1 -1.2815 -2.2237 3.8111 29 1 -1.6674 0.0064 4.6820 30 1 -0.3633 0.6159 0.8228 31 1 -0.3634 0.4046 -0.9447 32 1 -0.3634 -1.0204 0.1221 33 1 1.5382 -1.6923 -1.3412 34 1 1.8512 -0.1267 -2.1315 35 1 5.4671 -2.7094 -0.9363 36 1 8.8235 0.4414 -2.7276 37 1 3.6156 -2.6761 0.0948 38 1 5.0739 -1.6529 0.0933 39 1 3.2888 -2.7453 2.4624 40 1 4.8138 -1.8673 2.7305 41 1 3.3037 -1.2720 3.4610 42 1 0.1519 1.6504 3.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880456831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:45 Heat of formation + Delta-G solvation = -91.800325 kcal Electronic energy + Delta-G solvation = -31093.885700 eV Core-core repulsion = 26433.417192 eV Total energy + Delta-G solvation = -4660.468508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.88063 -49.20202 -48.93280 -40.45650 -38.40975 -37.32648 -34.47608 -32.98693 -32.02600 -31.13960 -30.43850 -27.84216 -26.41347 -26.12107 -24.71402 -23.58679 -23.09243 -20.60617 -20.31593 -19.44736 -18.51014 -18.35075 -17.64795 -16.95412 -16.68293 -16.32844 -15.90602 -15.72544 -15.36832 -15.32399 -15.05559 -14.90252 -14.81157 -14.68692 -14.51346 -14.09322 -13.74660 -13.42781 -13.06026 -12.73567 -12.59725 -12.39406 -12.08947 -11.88381 -11.62469 -11.58623 -11.38993 -10.97837 -10.94266 -10.63185 -10.55884 -10.40409 -10.18873 -10.03154 -9.93641 -9.74053 -9.39561 -9.00929 -8.49499 -8.16833 -6.52506 -5.76380 -3.74761 0.08375 0.39408 2.37171 2.96460 3.14613 3.26206 3.28708 3.36485 3.38498 3.59024 3.94280 3.98113 4.23189 4.36638 4.51267 4.96102 5.04351 5.09884 5.14009 5.19617 5.36291 5.48665 5.53453 5.55391 5.78355 5.89381 5.99318 6.14473 6.18285 6.23176 6.30666 6.40673 6.43517 6.57447 6.72317 6.80785 7.01098 7.19540 7.23467 7.37712 7.63511 7.76245 8.23895 8.57050 9.07514 9.57287 10.41044 10.98833 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003478 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.317165 B = 8048.454897 C = 8963.989001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 H 0.032 0.968 4 C 0.097 3.903 5 N -0.584 5.584 6 C 0.552 3.448 7 O -0.533 6.533 8 C -0.142 4.142 9 C -0.073 4.073 10 C 0.051 3.949 11 F -0.119 7.119 12 C 0.119 3.881 13 F -0.117 7.117 14 C -0.174 4.174 15 C 0.178 3.822 16 F -0.104 7.104 17 C 0.067 3.933 18 C 0.156 3.844 19 H 0.031 0.969 20 C -0.126 4.126 21 N -0.573 5.573 22 C -0.284 4.284 23 H 0.051 0.949 24 C 0.055 3.945 25 N -0.854 5.854 26 Si 0.868 3.132 27 H -0.279 1.279 28 H -0.273 1.273 29 H -0.291 1.291 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.722 -5.306 -8.277 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 H 0.050 0.950 4 C -0.027 4.027 5 N -0.314 5.314 6 C 0.339 3.661 7 O -0.411 6.411 8 C -0.146 4.146 9 C -0.092 4.092 10 C 0.031 3.969 11 F -0.098 7.098 12 C 0.099 3.901 13 F -0.095 7.095 14 C -0.194 4.194 15 C 0.157 3.843 16 F -0.082 7.082 17 C -0.057 4.057 18 C 0.049 3.951 19 H 0.048 0.952 20 C -0.184 4.184 21 N -0.298 5.298 22 C -0.412 4.412 23 H 0.069 0.931 24 C -0.151 4.151 25 N -0.490 5.490 26 Si 0.695 3.305 27 H -0.206 1.206 28 H -0.197 1.197 29 H -0.217 1.217 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.193 0.807 36 H 0.183 0.817 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.491 -4.816 -8.594 15.908 hybrid contribution -0.598 -0.117 0.477 0.774 sum 11.893 -4.932 -8.117 15.220 Atomic orbital electron populations 1.21753 0.94855 1.02438 0.99790 1.20722 0.93745 0.93814 0.85007 0.95021 1.22510 0.77706 1.01362 1.01074 1.47905 1.07745 1.55674 1.20041 1.17743 0.84493 0.80579 0.83275 1.90818 1.78033 1.39173 1.33066 1.20034 0.95128 0.95877 1.03593 1.21598 0.94311 0.97238 0.96007 1.17397 0.92110 0.85081 1.02340 1.91582 1.91031 1.45664 1.81511 1.17401 0.78079 0.94328 1.00332 1.91579 1.30917 1.93141 1.93849 1.20887 0.95622 0.98048 1.04849 1.17183 0.90798 0.83013 0.93260 1.91640 1.91317 1.45258 1.79961 1.23341 0.98819 0.96861 0.86673 1.20980 0.87996 0.95328 0.90798 0.95176 1.21632 0.97977 0.99908 0.98881 1.43948 0.99236 1.67547 1.19031 1.18449 1.17139 0.90613 1.15049 0.93134 1.25590 0.99428 0.96082 0.94037 1.70316 1.33635 1.04371 1.40679 0.86906 0.86192 0.79057 0.78331 1.20558 1.19744 1.21736 0.91078 0.94972 0.92247 0.91418 0.89895 0.80706 0.81701 0.90828 0.89791 0.93012 0.94654 0.90762 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 7.99 37.16 0.30 -2.39 16 2 C 0.17 3.68 3.58 -67.48 -0.24 3.44 16 3 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 1.76 5.90 -3.60 -0.02 1.73 16 5 N -0.58 -9.88 2.95 -173.43 -0.51 -10.39 16 6 C 0.55 9.32 7.36 -12.46 -0.09 9.23 16 7 O -0.53 -10.57 15.33 5.28 0.08 -10.49 16 8 C -0.14 -1.90 5.46 -104.91 -0.57 -2.47 16 9 C -0.07 -0.80 7.36 -39.13 -0.29 -1.08 16 10 C 0.05 0.54 7.29 -39.44 -0.29 0.25 16 11 F -0.12 -1.31 17.17 2.25 0.04 -1.27 16 12 C 0.12 1.19 7.31 -39.24 -0.29 0.91 16 13 F -0.12 -1.19 17.17 2.25 0.04 -1.15 16 14 C -0.17 -1.67 9.99 -39.51 -0.39 -2.06 16 15 C 0.18 2.22 7.24 -38.98 -0.28 1.94 16 16 F -0.10 -1.50 15.99 2.25 0.04 -1.47 16 17 C 0.07 1.03 4.26 -3.36 -0.01 1.01 16 18 C 0.16 3.00 3.67 -67.25 -0.25 2.76 16 19 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.13 -2.24 8.24 37.16 0.31 -1.93 16 21 N -0.57 -12.75 2.73 -156.76 -0.43 -13.18 16 22 C -0.28 -6.87 6.11 -15.06 -0.09 -6.96 16 23 H 0.05 1.26 7.63 -52.48 -0.40 0.86 16 24 C 0.05 1.37 3.06 -17.43 -0.05 1.32 16 25 N -0.85 -22.99 13.39 55.49 0.74 -22.24 16 26 Si 0.87 19.60 29.41 -169.99 -5.00 14.60 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 30 H 0.07 1.65 5.74 -51.93 -0.30 1.35 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.22 7.60 -51.93 -0.39 0.82 16 33 H 0.07 1.17 8.12 -51.92 -0.42 0.75 16 34 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 35 H 0.18 1.75 5.52 -52.49 -0.29 1.46 16 36 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.08 1.08 3.96 -51.93 -0.21 0.88 16 39 H 0.05 0.89 7.79 -51.93 -0.40 0.48 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.54 7.55 -51.93 -0.39 1.15 16 42 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -28.29 348.19 -6.86 -35.15 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.84 Total: -0.49 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.27 Total: 5.68 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.20 Total: -45.82 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.11 Total: -3.89 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.00 Total: 14.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.29 -6.86 -35.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.653 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds