Wall clock time and date at job start Wed Apr 1 2020 02:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.75181 * 2 1 4 4 C 1.53371 * 109.60581 * 239.57185 * 2 1 3 5 5 N 1.46958 * 108.63658 * 190.83577 * 4 2 1 6 6 C 1.34778 * 120.59665 * 235.20932 * 5 4 2 7 7 O 1.21594 * 119.99543 * 4.75111 * 6 5 4 8 8 C 1.47563 * 120.00307 * 184.75812 * 6 5 4 9 9 C 1.39757 * 120.13427 * 31.07148 * 8 6 5 10 10 C 1.37915 * 119.87579 * 179.97438 * 9 8 6 11 11 F 1.35107 * 119.92654 * 179.97438 * 10 9 8 12 12 C 1.38940 * 120.15259 * 359.97438 * 10 9 8 13 13 F 1.35094 * 119.87345 * 179.97438 * 12 10 9 14 14 C 1.38459 * 120.26375 * 359.97438 * 12 10 9 15 15 C 1.38211 * 120.11894 * 359.78775 * 14 12 10 16 16 F 1.35094 * 120.07233 * 180.25516 * 15 14 12 17 17 C 1.46965 * 118.81590 * 55.22323 * 5 4 2 18 18 C 1.53818 * 108.57586 * 304.65202 * 17 5 4 19 19 H 1.08997 * 109.76031 * 289.93889 * 18 17 5 20 20 C 1.53003 * 109.69238 * 169.28612 * 18 17 5 21 21 N 1.46963 * 108.40147 * 49.63748 * 18 17 5 22 22 C 1.36930 * 120.59921 * 124.75379 * 21 18 17 23 23 H 1.08008 * 120.00090 * 299.35947 * 22 21 18 24 24 C 1.38809 * 120.00310 * 119.35479 * 22 21 18 25 25 N 1.31624 * 119.99553 * 330.66641 * 24 22 21 26 26 Si 1.86800 * 120.00332 * 150.66198 * 24 22 21 27 27 H 1.48499 * 109.47041 * 270.00309 * 26 24 22 28 28 H 1.48502 * 109.46816 * 30.00365 * 26 24 22 29 29 H 1.48502 * 109.47154 * 150.00051 * 26 24 22 30 30 H 1.09006 * 109.46745 * 306.81482 * 1 2 3 31 31 H 1.09001 * 109.47476 * 66.81625 * 1 2 3 32 32 H 1.09003 * 109.47447 * 186.82106 * 1 2 3 33 33 H 1.09009 * 109.61105 * 310.57712 * 4 2 1 34 34 H 1.08996 * 109.61362 * 70.91444 * 4 2 1 35 35 H 1.07992 * 120.05746 * 359.95314 * 9 8 6 36 36 H 1.07994 * 119.93806 * 180.02562 * 14 12 10 37 37 H 1.08999 * 109.61030 * 64.51878 * 17 5 4 38 38 H 1.08997 * 109.61687 * 184.86648 * 17 5 4 39 39 H 1.08996 * 109.47186 * 304.39499 * 20 18 17 40 40 H 1.09001 * 109.46985 * 64.39395 * 20 18 17 41 41 H 1.08999 * 109.47165 * 184.39352 * 20 18 17 42 42 H 0.97002 * 119.99718 * 175.05511 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4906 -0.9491 -1.0990 6 6 4.3491 -0.5135 -2.0423 7 8 3.9392 0.1401 -2.9821 8 6 5.7864 -0.8299 -1.9346 9 6 6.1995 -2.0193 -1.3282 10 6 7.5442 -2.3099 -1.2309 11 9 7.9447 -3.4593 -0.6444 12 6 8.4880 -1.4234 -1.7346 13 9 9.8037 -1.7134 -1.6358 14 6 8.0854 -0.2437 -2.3375 15 6 6.7406 0.0562 -2.4453 16 9 6.3487 1.2051 -3.0384 17 6 3.9840 -1.6502 0.0947 18 6 3.4697 -0.9135 1.3433 19 1 3.9730 0.0488 1.4367 20 6 3.7383 -1.7604 2.5889 21 7 2.0232 -0.7012 1.1938 22 6 1.1511 -1.1437 2.1522 23 1 1.0941 -2.1966 2.3858 24 6 0.3402 -0.2390 2.8236 25 7 0.7464 0.9996 3.0057 26 14 -1.3276 -0.7794 3.4686 27 1 -2.3595 -0.5506 2.4256 28 1 -1.2815 -2.2237 3.8111 29 1 -1.6674 0.0064 4.6820 30 1 -0.3633 0.6159 0.8228 31 1 -0.3634 0.4046 -0.9447 32 1 -0.3634 -1.0204 0.1221 33 1 1.5382 -1.6923 -1.3412 34 1 1.8512 -0.1267 -2.1315 35 1 5.4671 -2.7094 -0.9363 36 1 8.8235 0.4414 -2.7276 37 1 3.6156 -2.6761 0.0948 38 1 5.0739 -1.6529 0.0933 39 1 3.2888 -2.7453 2.4624 40 1 4.8138 -1.8673 2.7305 41 1 3.3037 -1.2720 3.4610 42 1 0.1519 1.6504 3.4106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:44 Heat of formation + Delta-G solvation = -106.952901 kcal Electronic energy + Delta-G solvation = -31094.542765 eV Core-core repulsion = 26433.417192 eV Total energy + Delta-G solvation = -4661.125573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.70983 -50.22292 -49.76644 -41.69888 -39.53935 -38.79742 -36.01900 -34.49977 -33.60494 -32.38157 -31.38324 -29.52030 -27.82300 -27.58803 -26.11740 -24.73205 -24.21902 -22.12884 -21.74263 -20.90628 -19.44557 -19.34321 -18.73075 -18.17735 -17.75435 -17.62167 -17.19234 -16.77748 -16.66500 -16.48170 -16.39689 -16.20092 -16.04130 -15.91521 -15.64427 -15.38144 -15.14720 -14.74413 -14.55453 -14.09068 -13.77448 -13.56226 -13.41416 -13.22422 -13.19880 -12.92131 -12.77517 -12.65371 -12.45868 -12.30136 -12.22647 -12.13952 -11.77375 -11.65459 -11.54869 -11.09354 -10.39911 -10.24989 -9.95222 -9.73098 -8.42944 -7.59621 -5.68763 -0.84766 -0.45609 1.31639 1.44966 1.51739 1.55891 1.74342 2.09561 2.33212 2.50803 2.69442 3.01747 3.06814 3.16287 3.25412 3.50261 3.65255 4.04137 4.08919 4.20751 4.25820 4.31068 4.35812 4.44025 4.48480 4.53687 4.62006 4.63981 4.74057 4.78973 4.82751 4.94777 4.97077 5.18221 5.30849 5.35119 5.44006 5.52705 5.65297 5.70317 5.79612 6.30194 6.63304 6.91659 7.25752 7.74160 8.55103 9.06591 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003478 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.317165 B = 8048.454897 C = 8963.989001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.174 3.826 3 H -0.008 1.008 4 C 0.109 3.891 5 N -0.589 5.589 6 C 0.552 3.448 7 O -0.569 6.569 8 C -0.158 4.158 9 C -0.064 4.064 10 C 0.059 3.941 11 F -0.118 7.118 12 C 0.129 3.871 13 F -0.113 7.113 14 C -0.152 4.152 15 C 0.165 3.835 16 F -0.121 7.121 17 C 0.079 3.921 18 C 0.146 3.854 19 H 0.000 1.000 20 C -0.115 4.115 21 N -0.587 5.587 22 C -0.273 4.273 23 H 0.050 0.950 24 C 0.018 3.982 25 N -0.895 5.895 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.263 1.263 29 H -0.302 1.302 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.542 -7.555 -8.979 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.010 0.990 4 C -0.015 4.015 5 N -0.318 5.318 6 C 0.340 3.660 7 O -0.450 6.450 8 C -0.162 4.162 9 C -0.083 4.083 10 C 0.039 3.961 11 F -0.097 7.097 12 C 0.108 3.892 13 F -0.091 7.091 14 C -0.171 4.171 15 C 0.144 3.856 16 F -0.099 7.099 17 C -0.044 4.044 18 C 0.040 3.960 19 H 0.018 0.982 20 C -0.173 4.173 21 N -0.312 5.312 22 C -0.402 4.402 23 H 0.067 0.933 24 C -0.185 4.185 25 N -0.534 5.534 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.188 1.188 29 H -0.229 1.229 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.206 0.794 36 H 0.212 0.788 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.327 -7.104 -9.293 18.495 hybrid contribution -1.030 0.586 0.683 1.368 sum 13.297 -6.518 -8.610 17.130 Atomic orbital electron populations 1.21654 0.94528 1.01982 0.99947 1.20635 0.94135 0.92170 0.86355 0.99048 1.22214 0.78922 1.01482 0.98865 1.47970 1.07294 1.55904 1.20676 1.18211 0.85817 0.79461 0.82467 1.90792 1.78996 1.40719 1.34490 1.19777 0.93053 0.97500 1.05863 1.21541 0.94865 0.96353 0.95501 1.17346 0.91907 0.84995 1.01880 1.91596 1.90965 1.45664 1.81455 1.17408 0.78074 0.94094 0.99590 1.91600 1.30741 1.93078 1.93714 1.21031 0.94767 0.98030 1.03295 1.17400 0.91796 0.82615 0.93800 1.91600 1.91623 1.46236 1.80440 1.23319 1.00536 0.96741 0.83805 1.21148 0.86120 0.94945 0.93772 0.98199 1.21517 1.00219 0.99266 0.96328 1.44194 1.00481 1.67421 1.19108 1.18569 1.16916 0.90370 1.14375 0.93273 1.26098 1.01797 0.96010 0.94557 1.70409 1.34465 1.05518 1.43023 0.86110 0.83267 0.78806 0.77324 1.20302 1.18763 1.22893 0.94023 0.92505 0.92009 0.89830 0.90272 0.79381 0.78812 0.88729 0.86781 0.92147 0.91001 0.94537 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 7.99 71.98 0.58 -4.55 16 2 C 0.17 7.51 3.58 45.03 0.16 7.67 16 3 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 4 C 0.11 3.90 5.90 86.42 0.51 4.41 16 5 N -0.59 -19.31 2.95 -820.87 -2.42 -21.73 16 6 C 0.55 18.20 7.36 86.70 0.64 18.83 16 7 O -0.57 -22.71 15.33 -4.01 -0.06 -22.77 16 8 C -0.16 -3.93 5.46 -20.05 -0.11 -4.04 16 9 C -0.06 -1.20 7.36 22.56 0.17 -1.03 16 10 C 0.06 1.03 7.29 22.36 0.16 1.19 16 11 F -0.12 -2.15 17.17 44.97 0.77 -1.38 16 12 C 0.13 2.12 7.31 22.49 0.16 2.28 16 13 F -0.11 -1.88 17.17 44.97 0.77 -1.11 16 14 C -0.15 -2.42 9.99 22.32 0.22 -2.20 16 15 C 0.16 3.81 7.24 22.66 0.16 3.97 16 16 F -0.12 -3.43 15.99 44.97 0.72 -2.71 16 17 C 0.08 2.24 4.26 86.57 0.37 2.60 16 18 C 0.15 5.57 3.67 45.18 0.17 5.74 16 19 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 20 C -0.12 -3.93 8.24 71.98 0.59 -3.34 16 21 N -0.59 -26.31 2.73 -649.87 -1.77 -28.08 16 22 C -0.27 -13.25 6.11 84.03 0.51 -12.74 16 23 H 0.05 2.41 7.63 -2.91 -0.02 2.39 16 24 C 0.02 0.90 3.06 84.86 0.26 1.16 16 25 N -0.90 -50.02 13.39 21.65 0.29 -49.73 16 26 Si 0.92 40.74 29.41 68.60 2.02 42.76 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 30 H 0.04 1.97 5.74 -2.38 -0.01 1.96 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.50 7.60 -2.39 -0.02 2.48 16 33 H 0.08 2.74 8.12 -2.38 -0.02 2.72 16 34 H 0.08 2.90 7.00 -2.39 -0.02 2.88 16 35 H 0.19 3.01 5.52 -2.91 -0.02 2.99 16 36 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 38 H 0.11 2.57 3.96 -2.39 -0.01 2.56 16 39 H 0.06 1.94 7.79 -2.39 -0.02 1.92 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.51 7.55 -2.39 -0.02 1.49 16 42 H 0.25 13.65 8.32 -92.71 -0.77 12.88 16 Total: -1.00 -63.78 348.19 5.95 -57.83 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.08 Total: 6.96 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 4.56 Total: 19.97 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.90 Total: -99.54 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 2.26 Total: -5.20 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.02 Total: 42.76 kcal Total: -63.78 5.95 -57.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.126 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds