Wall clock time and date at job start Wed Apr 1 2020 02:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63638 * 2 1 4 4 C 1.54335 * 111.00206 * 236.92548 * 2 1 3 5 5 N 1.47024 * 107.26223 * 219.60045 * 4 2 1 6 6 C 1.34777 * 125.64366 * 178.85219 * 5 4 2 7 7 O 1.21554 * 119.99417 * 185.45765 * 6 5 4 8 8 C 1.47848 * 120.00420 * 5.45264 * 6 5 4 9 9 C 1.39597 * 120.13005 * 353.04165 * 8 6 5 10 10 C 1.37949 * 119.90203 * 179.72479 * 9 8 6 11 11 C 1.38341 * 120.17072 * 0.50119 * 10 9 8 12 12 C 1.50706 * 119.86197 * 179.76737 * 11 10 9 13 13 F 1.39898 * 109.47402 * 239.72579 * 12 11 10 14 14 F 1.39905 * 109.46677 * 119.72678 * 12 11 10 15 15 C 1.38543 * 120.27399 * 359.49373 * 11 10 9 16 16 F 1.35096 * 119.95936 * 180.23329 * 15 11 10 17 17 C 1.38221 * 120.08895 * 0.25145 * 15 11 10 18 18 C 1.47419 * 108.70318 * 358.58582 * 5 4 2 19 19 C 1.54911 * 104.83362 * 24.35427 * 18 5 4 20 20 H 1.09001 * 110.99945 * 81.06541 * 19 18 5 21 21 N 1.46502 * 111.00380 * 204.87523 * 19 18 5 22 22 C 1.36931 * 120.00278 * 273.54848 * 21 19 18 23 23 H 1.08004 * 120.00188 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00264 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99517 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00443 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46930 * 89.99944 * 26 24 22 28 28 H 1.48501 * 109.47388 * 210.00226 * 26 24 22 29 29 H 1.48501 * 109.46939 * 330.00330 * 26 24 22 30 30 H 1.08997 * 109.47493 * 296.85541 * 1 2 3 31 31 H 1.09002 * 109.47092 * 56.85691 * 1 2 3 32 32 H 1.09002 * 109.47262 * 176.85187 * 1 2 3 33 33 H 1.09002 * 109.99132 * 100.12306 * 4 2 1 34 34 H 1.09000 * 109.77758 * 338.95475 * 4 2 1 35 35 H 1.07997 * 120.04741 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.91137 * 180.27473 * 10 9 8 37 37 H 1.09000 * 109.47167 * 359.72727 * 12 11 10 38 38 H 1.07995 * 120.08630 * 179.97438 * 17 15 11 39 39 H 1.09001 * 110.36658 * 143.19867 * 18 5 4 40 40 H 1.09007 * 110.36786 * 265.51344 * 18 5 4 41 41 H 0.97004 * 119.99413 * 93.54719 * 21 19 18 42 42 H 0.97002 * 119.99430 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2074 5 7 3.2495 -1.5469 -0.7354 6 6 4.0005 -2.3783 -1.4845 7 8 4.8835 -3.0331 -0.9658 8 6 3.7503 -2.4940 -2.9371 9 6 2.6484 -1.8576 -3.5112 10 6 2.4227 -1.9640 -4.8679 11 6 3.2795 -2.7082 -5.6591 12 6 3.0233 -2.8240 -7.1397 13 9 2.8474 -4.1698 -7.4787 14 9 4.1149 -2.3045 -7.8438 15 6 4.3753 -3.3427 -5.0969 16 9 5.2105 -4.0638 -5.8762 17 6 4.6149 -3.2391 -3.7395 18 6 3.4652 -1.2446 0.6913 19 6 2.0789 -0.7933 1.2151 20 1 1.4469 -1.6529 1.4382 21 7 2.2174 0.0720 2.3891 22 6 2.3123 -0.4796 3.6388 23 1 2.2856 -1.5526 3.7590 24 6 2.4430 0.3404 4.7513 25 7 2.4752 1.6480 4.6048 26 14 2.5719 -0.4119 6.4562 27 1 3.9994 -0.6609 6.7808 28 1 1.9928 0.5224 7.4547 29 1 1.8258 -1.6955 6.4885 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0564 33 1 2.3848 -0.0960 -1.9951 34 1 1.3216 -1.4701 -1.5824 35 1 1.9760 -1.2796 -2.8947 36 1 1.5727 -1.4681 -5.3130 37 1 2.1245 -2.2639 -7.3978 38 1 5.4689 -3.7341 -3.3013 39 1 3.7993 -2.1363 1.2217 40 1 4.1930 -0.4409 0.8030 41 1 2.2418 1.0357 2.2811 42 1 2.5669 2.2209 5.3822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939133039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:36 Heat of formation + Delta-G solvation = -115.925545 kcal Electronic energy + Delta-G solvation = -29431.844613 eV Core-core repulsion = 24770.329958 eV Total energy + Delta-G solvation = -4661.514656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.69259 -49.02403 -47.38413 -40.75098 -38.86842 -37.67281 -34.43675 -32.90462 -32.42326 -31.39218 -30.64234 -28.18660 -26.94381 -26.37866 -24.26039 -23.37565 -22.99011 -21.45766 -20.35263 -19.95887 -18.14992 -18.00953 -17.83252 -17.66128 -17.26433 -16.50689 -16.22994 -15.96741 -15.86523 -15.38117 -14.79405 -14.68233 -14.36947 -14.26641 -14.17992 -13.77623 -13.74403 -13.55681 -13.19590 -13.13479 -13.02407 -12.95933 -12.65313 -12.56941 -12.22736 -11.85628 -11.68206 -11.42948 -11.15997 -11.08147 -10.80360 -10.67802 -10.32624 -10.01446 -9.98423 -9.80758 -9.70778 -9.27942 -9.08530 -8.55775 -7.15573 -5.90607 -3.21623 0.09274 0.65873 2.41472 2.84281 3.13700 3.32304 3.37582 3.43776 3.44276 3.56212 3.72492 3.97630 4.19094 4.35056 4.44428 4.54149 4.55512 4.69099 4.78056 4.90070 4.99913 5.14685 5.23616 5.35751 5.36768 5.44277 5.55378 5.58318 5.67278 5.71149 5.75967 5.87336 6.03247 6.13178 6.19186 6.26059 6.33115 6.45819 6.47580 6.77639 7.50880 7.59968 8.07063 8.26772 9.39226 9.90829 10.25655 11.31177 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.002253 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.000989 B =12425.838148 C =13125.454638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 H 0.088 0.912 4 C 0.093 3.907 5 N -0.602 5.602 6 C 0.564 3.436 7 O -0.532 6.532 8 C -0.071 4.071 9 C -0.140 4.140 10 C -0.063 4.063 11 C -0.194 4.194 12 C 0.316 3.684 13 F -0.195 7.195 14 F -0.195 7.195 15 C 0.132 3.868 16 F -0.124 7.124 17 C -0.102 4.102 18 C 0.079 3.921 19 C 0.177 3.823 20 H 0.066 0.934 21 N -0.709 5.709 22 C -0.249 4.249 23 H 0.073 0.927 24 C -0.007 4.007 25 N -0.929 5.929 26 Si 0.908 3.092 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.155 0.845 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.387 0.613 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -4.742 -23.696 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 H 0.106 0.894 4 C -0.030 4.030 5 N -0.335 5.335 6 C 0.352 3.648 7 O -0.410 6.410 8 C -0.075 4.075 9 C -0.158 4.158 10 C -0.081 4.081 11 C -0.197 4.197 12 C 0.262 3.738 13 F -0.176 7.176 14 F -0.176 7.176 15 C 0.112 3.888 16 F -0.103 7.103 17 C -0.122 4.122 18 C -0.045 4.045 19 C 0.065 3.935 20 H 0.084 0.916 21 N -0.349 5.349 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.739 3.261 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.173 0.827 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.222 0.778 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.673 -5.266 -23.301 24.169 hybrid contribution 0.540 -0.250 0.623 0.861 sum -3.133 -5.515 -22.678 23.548 Atomic orbital electron populations 1.21692 0.93614 1.01677 1.02397 1.22544 0.96602 1.00066 0.94307 0.89367 1.22653 0.87793 0.94691 0.97845 1.48385 1.29185 1.43130 1.12755 1.17752 0.81904 0.79843 0.85341 1.90808 1.32629 1.44330 1.73197 1.19989 0.95659 0.97825 0.93984 1.22962 0.97953 0.99191 0.95682 1.20861 0.97921 0.96003 0.93329 1.20710 0.98519 1.04480 0.95943 1.20347 0.88900 0.78264 0.86300 1.93045 1.95681 1.35751 1.93163 1.93047 1.58013 1.86396 1.80188 1.17254 0.89147 0.93624 0.88769 1.91573 1.69613 1.74967 1.74099 1.21270 1.01092 0.98949 0.90843 1.23576 1.02199 1.01300 0.77462 1.21378 0.91795 0.93698 0.86642 0.91565 1.42272 1.86847 1.05082 1.00661 1.19232 1.43301 0.91949 0.83527 0.90934 1.24764 1.02161 0.95347 0.98088 1.69656 1.56443 1.02057 1.29495 0.86179 0.77795 0.78011 0.84122 1.21532 1.21688 1.20617 0.91057 0.93041 0.92760 0.90595 0.90332 0.80551 0.83491 0.85596 0.82693 0.90598 0.90986 0.77809 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.17 37.16 0.34 -1.18 16 2 C -0.12 -1.48 3.15 -88.78 -0.28 -1.76 16 3 H 0.09 1.18 8.00 -51.93 -0.42 0.76 16 4 C 0.09 0.97 4.48 -3.06 -0.01 0.96 16 5 N -0.60 -8.59 3.33 -175.85 -0.58 -9.17 16 6 C 0.56 8.52 7.81 -12.33 -0.10 8.43 16 7 O -0.53 -10.04 16.60 5.32 0.09 -9.96 16 8 C -0.07 -0.83 5.87 -104.98 -0.62 -1.45 16 9 C -0.14 -1.17 8.61 -39.18 -0.34 -1.50 16 10 C -0.06 -0.41 9.65 -39.65 -0.38 -0.80 16 11 C -0.19 -1.69 5.38 -104.47 -0.56 -2.25 16 12 C 0.32 2.38 5.15 36.01 0.19 2.57 16 13 F -0.20 -1.91 17.06 2.25 0.04 -1.88 16 14 F -0.20 -1.92 17.06 2.25 0.04 -1.88 16 15 C 0.13 1.46 7.12 -39.47 -0.28 1.17 16 16 F -0.12 -1.52 16.43 2.25 0.04 -1.49 16 17 C -0.10 -1.20 9.57 -39.11 -0.37 -1.57 16 18 C 0.08 1.38 6.63 -2.53 -0.02 1.37 16 19 C 0.18 3.09 3.13 -65.78 -0.21 2.88 16 20 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 21 N -0.71 -15.98 5.28 -51.35 -0.27 -16.25 16 22 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 34 H 0.08 0.65 6.37 -51.93 -0.33 0.32 16 35 H 0.18 1.17 2.74 -57.96 -0.16 1.01 16 36 H 0.15 0.38 7.94 -52.49 -0.42 -0.04 16 37 H 0.13 0.38 7.87 -51.93 -0.41 -0.02 16 38 H 0.16 1.87 7.67 -52.49 -0.40 1.47 16 39 H 0.08 1.47 7.98 -51.93 -0.41 1.05 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.39 9.26 7.71 -40.82 -0.31 8.94 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -31.95 360.62 -7.27 -39.22 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.86 Total: 5.28 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.89 Total: -0.03 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.13 Total: -51.25 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.95 -7.27 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939133039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.705 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds