Wall clock time and date at job start Wed Apr 1 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63638 * 2 1 4 4 C 1.54335 * 111.00206 * 236.92548 * 2 1 3 5 5 N 1.47024 * 107.26223 * 219.60045 * 4 2 1 6 6 C 1.34777 * 125.64366 * 178.85219 * 5 4 2 7 7 O 1.21554 * 119.99417 * 185.45765 * 6 5 4 8 8 C 1.47848 * 120.00420 * 5.45264 * 6 5 4 9 9 C 1.39597 * 120.13005 * 353.04165 * 8 6 5 10 10 C 1.37949 * 119.90203 * 179.72479 * 9 8 6 11 11 C 1.38341 * 120.17072 * 0.50119 * 10 9 8 12 12 C 1.50706 * 119.86197 * 179.76737 * 11 10 9 13 13 F 1.39898 * 109.47402 * 239.72579 * 12 11 10 14 14 F 1.39905 * 109.46677 * 119.72678 * 12 11 10 15 15 C 1.38543 * 120.27399 * 359.49373 * 11 10 9 16 16 F 1.35096 * 119.95936 * 180.23329 * 15 11 10 17 17 C 1.38221 * 120.08895 * 0.25145 * 15 11 10 18 18 C 1.47419 * 108.70318 * 358.58582 * 5 4 2 19 19 C 1.54911 * 104.83362 * 24.35427 * 18 5 4 20 20 H 1.09001 * 110.99945 * 81.06541 * 19 18 5 21 21 N 1.46502 * 111.00380 * 204.87523 * 19 18 5 22 22 C 1.36931 * 120.00278 * 273.54848 * 21 19 18 23 23 H 1.08004 * 120.00188 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00264 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99517 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00443 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46930 * 89.99944 * 26 24 22 28 28 H 1.48501 * 109.47388 * 210.00226 * 26 24 22 29 29 H 1.48501 * 109.46939 * 330.00330 * 26 24 22 30 30 H 1.08997 * 109.47493 * 296.85541 * 1 2 3 31 31 H 1.09002 * 109.47092 * 56.85691 * 1 2 3 32 32 H 1.09002 * 109.47262 * 176.85187 * 1 2 3 33 33 H 1.09002 * 109.99132 * 100.12306 * 4 2 1 34 34 H 1.09000 * 109.77758 * 338.95475 * 4 2 1 35 35 H 1.07997 * 120.04741 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.91137 * 180.27473 * 10 9 8 37 37 H 1.09000 * 109.47167 * 359.72727 * 12 11 10 38 38 H 1.07995 * 120.08630 * 179.97438 * 17 15 11 39 39 H 1.09001 * 110.36658 * 143.19867 * 18 5 4 40 40 H 1.09007 * 110.36786 * 265.51344 * 18 5 4 41 41 H 0.97004 * 119.99413 * 93.54719 * 21 19 18 42 42 H 0.97002 * 119.99430 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2074 5 7 3.2495 -1.5469 -0.7354 6 6 4.0005 -2.3783 -1.4845 7 8 4.8835 -3.0331 -0.9658 8 6 3.7503 -2.4940 -2.9371 9 6 2.6484 -1.8576 -3.5112 10 6 2.4227 -1.9640 -4.8679 11 6 3.2795 -2.7082 -5.6591 12 6 3.0233 -2.8240 -7.1397 13 9 2.8474 -4.1698 -7.4787 14 9 4.1149 -2.3045 -7.8438 15 6 4.3753 -3.3427 -5.0969 16 9 5.2105 -4.0638 -5.8762 17 6 4.6149 -3.2391 -3.7395 18 6 3.4652 -1.2446 0.6913 19 6 2.0789 -0.7933 1.2151 20 1 1.4469 -1.6529 1.4382 21 7 2.2174 0.0720 2.3891 22 6 2.3123 -0.4796 3.6388 23 1 2.2856 -1.5526 3.7590 24 6 2.4430 0.3404 4.7513 25 7 2.4752 1.6480 4.6048 26 14 2.5719 -0.4119 6.4562 27 1 3.9994 -0.6609 6.7808 28 1 1.9928 0.5224 7.4547 29 1 1.8258 -1.6955 6.4885 30 1 -0.3634 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8605 32 1 -0.3634 -1.0261 -0.0564 33 1 2.3848 -0.0960 -1.9951 34 1 1.3216 -1.4701 -1.5824 35 1 1.9760 -1.2796 -2.8947 36 1 1.5727 -1.4681 -5.3130 37 1 2.1245 -2.2639 -7.3978 38 1 5.4689 -3.7341 -3.3013 39 1 3.7993 -2.1363 1.2217 40 1 4.1930 -0.4409 0.8030 41 1 2.2418 1.0357 2.2811 42 1 2.5669 2.2209 5.3822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939133039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:35 Heat of formation + Delta-G solvation = -136.189772 kcal Electronic energy + Delta-G solvation = -29432.723336 eV Core-core repulsion = 24770.329958 eV Total energy + Delta-G solvation = -4662.393379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.44096 -49.74945 -48.02075 -41.79393 -39.80160 -38.88914 -36.08247 -34.12616 -33.37973 -32.57279 -31.89044 -29.48687 -27.93108 -27.25088 -25.90663 -24.24143 -23.95504 -22.58075 -21.45932 -21.14150 -19.31409 -18.99844 -18.64721 -18.48247 -18.28448 -17.62809 -17.17622 -16.90421 -16.84672 -16.53122 -16.30956 -15.70028 -15.43377 -15.37891 -15.04611 -14.91974 -14.68123 -14.52772 -14.39327 -14.27757 -14.09449 -14.03533 -13.58338 -13.42178 -13.16039 -12.99766 -12.92080 -12.88916 -12.62285 -12.20402 -12.07659 -12.07045 -11.93790 -11.64243 -11.28342 -11.15670 -10.95235 -10.48526 -10.02355 -9.77635 -9.06587 -7.97901 -5.26747 -0.69137 -0.05829 1.46655 1.47654 1.48503 1.55661 1.71363 2.42247 2.53867 2.56742 2.90327 3.15723 3.28169 3.34841 3.36889 3.50930 3.80516 3.83983 3.93541 3.97554 3.98864 4.12341 4.18397 4.31500 4.38755 4.47308 4.51466 4.64015 4.66471 4.80487 4.87947 4.90034 4.94674 4.97803 5.08244 5.17215 5.24075 5.39659 5.50605 5.52437 5.58558 6.24367 6.37949 6.90143 7.32329 8.04083 8.27782 9.24499 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.002253 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.000989 B =12425.838148 C =13125.454638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 H 0.084 0.916 4 C 0.090 3.910 5 N -0.600 5.600 6 C 0.559 3.441 7 O -0.586 6.586 8 C -0.088 4.088 9 C -0.124 4.124 10 C -0.037 4.037 11 C -0.190 4.190 12 C 0.307 3.693 13 F -0.212 7.212 14 F -0.212 7.212 15 C 0.108 3.892 16 F -0.140 7.140 17 C -0.119 4.119 18 C 0.089 3.911 19 C 0.171 3.829 20 H 0.062 0.938 21 N -0.719 5.719 22 C -0.244 4.244 23 H 0.072 0.928 24 C -0.066 4.066 25 N -0.962 5.962 26 Si 0.965 3.035 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.270 1.270 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.202 0.798 36 H 0.208 0.792 37 H 0.188 0.812 38 H 0.133 0.867 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.379 0.621 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 -3.996 -26.769 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.031 4.031 5 N -0.331 5.331 6 C 0.349 3.651 7 O -0.468 6.468 8 C -0.091 4.091 9 C -0.141 4.141 10 C -0.054 4.054 11 C -0.192 4.192 12 C 0.254 3.746 13 F -0.193 7.193 14 F -0.193 7.193 15 C 0.088 3.912 16 F -0.119 7.119 17 C -0.139 4.139 18 C -0.037 4.037 19 C 0.060 3.940 20 H 0.080 0.920 21 N -0.358 5.358 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.259 4.259 25 N -0.612 5.612 26 Si 0.795 3.205 27 H -0.220 1.220 28 H -0.220 1.220 29 H -0.195 1.195 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.218 0.782 36 H 0.225 0.775 37 H 0.205 0.795 38 H 0.151 0.849 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.212 0.788 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.868 -4.546 -26.425 27.679 hybrid contribution 1.532 -0.529 1.487 2.200 sum -5.336 -5.075 -24.938 26.002 Atomic orbital electron populations 1.21670 0.91729 1.02829 1.02626 1.22475 0.98040 0.99358 0.92499 0.89770 1.23051 0.87024 0.95526 0.97468 1.48353 1.30273 1.43309 1.11173 1.18357 0.80978 0.78878 0.86848 1.90774 1.34984 1.46529 1.74516 1.19695 0.97827 1.00132 0.91437 1.23218 0.96262 0.97784 0.96823 1.21477 0.98158 0.93806 0.91991 1.21118 0.97431 1.03443 0.97241 1.21073 0.90355 0.78017 0.85135 1.93014 1.95737 1.37393 1.93187 1.93016 1.59364 1.86517 1.80449 1.17510 0.90413 0.94852 0.88400 1.91528 1.70411 1.75614 1.74314 1.21125 1.01182 0.99940 0.91634 1.23115 1.01581 0.99167 0.79866 1.21552 0.91693 0.93784 0.87002 0.92036 1.42363 1.86931 1.05195 1.01262 1.19540 1.41047 0.91949 0.85062 0.91036 1.25448 1.03376 0.95817 1.01264 1.69780 1.58596 1.03031 1.29829 0.85272 0.77332 0.77538 0.80408 1.21993 1.21959 1.19537 0.94111 0.89107 0.91586 0.86728 0.86542 0.78150 0.77523 0.79532 0.84931 0.93677 0.92995 0.78797 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.17 71.98 0.66 -1.77 16 2 C -0.10 -2.39 3.15 -9.60 -0.03 -2.42 16 3 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 4 C 0.09 1.49 4.48 86.73 0.39 1.87 16 5 N -0.60 -16.49 3.33 -828.53 -2.76 -19.24 16 6 C 0.56 17.00 7.81 86.79 0.68 17.67 16 7 O -0.59 -23.64 16.60 -3.88 -0.06 -23.70 16 8 C -0.09 -1.92 5.87 -20.09 -0.12 -2.04 16 9 C -0.12 -1.41 8.61 22.53 0.19 -1.21 16 10 C -0.04 -0.24 9.65 22.23 0.21 -0.03 16 11 C -0.19 -2.56 5.38 -19.77 -0.11 -2.67 16 12 C 0.31 3.33 5.15 71.24 0.37 3.70 16 13 F -0.21 -3.59 17.06 44.97 0.77 -2.82 16 14 F -0.21 -3.60 17.06 44.97 0.77 -2.84 16 15 C 0.11 2.30 7.12 22.34 0.16 2.46 16 16 F -0.14 -3.53 16.43 44.97 0.74 -2.79 16 17 C -0.12 -2.85 9.57 22.58 0.22 -2.64 16 18 C 0.09 3.20 6.63 86.86 0.58 3.77 16 19 C 0.17 5.92 3.13 46.38 0.15 6.07 16 20 H 0.06 2.20 8.04 -2.39 -0.02 2.19 16 21 N -0.72 -33.08 5.28 -316.38 -1.67 -34.75 16 22 C -0.24 -12.92 9.98 84.04 0.84 -12.08 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 25 N -0.96 -56.32 13.06 21.65 0.28 -56.04 16 26 Si 0.96 45.19 29.55 68.60 2.03 47.22 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.12 1.15 6.75 -2.39 -0.02 1.13 16 34 H 0.12 1.15 6.37 -2.39 -0.02 1.14 16 35 H 0.20 1.21 2.74 -8.05 -0.02 1.19 16 36 H 0.21 -1.01 7.94 -2.91 -0.02 -1.03 16 37 H 0.19 -0.21 7.87 -2.39 -0.02 -0.23 16 38 H 0.13 3.62 7.67 -2.91 -0.02 3.60 16 39 H 0.04 1.86 7.98 -2.39 -0.02 1.84 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.38 18.55 7.71 -92.71 -0.72 17.84 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -77.89 360.62 5.10 -72.79 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.36 Total: 14.68 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.65 Total: 7.50 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -4.14 Total: -110.04 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.06 Total: -23.70 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 2.27 Total: -8.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -77.89 5.10 -72.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939133039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.403 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds