Wall clock time and date at job start Wed Apr 1 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.88459 * 2 1 4 4 C 1.54910 * 111.00730 * 236.12314 * 2 1 3 5 5 N 1.47424 * 104.83485 * 204.87898 * 4 2 1 6 6 C 1.34775 * 125.64694 * 204.09115 * 5 4 2 7 7 O 1.21551 * 120.00202 * 5.75820 * 6 5 4 8 8 C 1.47847 * 119.99527 * 185.76086 * 6 5 4 9 9 C 1.39597 * 120.14916 * 353.03462 * 8 6 5 10 10 C 1.37939 * 119.85389 * 179.97438 * 9 8 6 11 11 C 1.38375 * 120.14246 * 359.75043 * 10 9 8 12 12 C 1.38341 * 120.29726 * 0.50973 * 11 10 9 13 13 C 1.50696 * 119.92883 * 179.76725 * 12 11 10 14 14 F 1.39902 * 109.46828 * 269.72498 * 13 12 11 15 15 F 1.39907 * 109.47392 * 29.72012 * 13 12 11 16 16 F 1.39896 * 109.47292 * 149.72326 * 13 12 11 17 17 C 1.37978 * 120.14265 * 359.48901 * 12 11 10 18 18 C 1.47025 * 108.70351 * 24.35238 * 5 4 2 19 19 C 1.54341 * 107.26547 * 358.58752 * 18 5 4 20 20 H 1.08999 * 110.66802 * 96.52131 * 19 18 5 21 21 N 1.46502 * 110.84996 * 219.67687 * 19 18 5 22 22 C 1.36937 * 119.99452 * 268.69202 * 21 19 18 23 23 H 1.08001 * 120.00427 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99724 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99825 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99900 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46919 * 90.00307 * 26 24 22 28 28 H 1.48496 * 109.47248 * 209.99965 * 26 24 22 29 29 H 1.48498 * 109.47547 * 330.00199 * 26 24 22 30 30 H 1.08998 * 109.47144 * 182.42707 * 1 2 3 31 31 H 1.09006 * 109.47120 * 302.42382 * 1 2 3 32 32 H 1.08999 * 109.47112 * 62.42718 * 1 2 3 33 33 H 1.08997 * 110.36861 * 86.03652 * 4 2 1 34 34 H 1.09006 * 110.45547 * 323.76075 * 4 2 1 35 35 H 1.08000 * 120.07159 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.92291 * 180.02562 * 10 9 8 37 37 H 1.08000 * 119.85178 * 180.27688 * 11 10 9 38 38 H 1.07998 * 120.07376 * 180.27814 * 17 12 11 39 39 H 1.08990 * 109.88414 * 118.12978 * 18 5 4 40 40 H 1.08993 * 109.88222 * 239.30161 * 18 5 4 41 41 H 0.97000 * 119.99888 * 88.68941 * 21 19 18 42 42 H 0.96998 * 119.99616 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4275 -1.2419 -0.7742 6 6 4.4479 -1.5598 -1.5953 7 8 4.3356 -1.3986 -2.7949 8 6 5.7038 -2.1044 -1.0370 9 6 5.8925 -2.1555 0.3453 10 6 7.0665 -2.6654 0.8596 11 6 8.0537 -3.1304 0.0089 12 6 7.8754 -3.0778 -1.3620 13 6 8.9582 -3.5817 -2.2810 14 9 9.8293 -2.5328 -2.5944 15 9 9.6701 -4.6051 -1.6459 16 9 8.3806 -4.0751 -3.4558 17 6 6.7058 -2.5702 -1.8895 18 6 3.4667 -1.2785 0.6951 19 6 2.0870 -0.8078 1.2020 20 1 1.4464 -1.6616 1.4227 21 7 2.2294 0.0496 2.3813 22 6 2.2015 -0.5004 3.6350 23 1 2.0741 -1.5662 3.7544 24 6 2.3370 0.3119 4.7525 25 7 2.4919 1.6108 4.6069 26 14 2.2982 -0.4383 6.4627 27 1 3.6768 -0.8085 6.8722 28 1 1.7448 0.5491 7.4239 29 1 1.4424 -1.6518 6.4518 30 1 -0.3633 -1.0267 0.0435 31 1 -0.3634 0.5510 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1713 -2.0839 34 1 1.4528 -1.6702 -1.4045 35 1 5.1207 -1.7973 1.0104 36 1 7.2135 -2.7058 1.9288 37 1 8.9692 -3.5328 0.4168 38 1 6.5659 -2.5338 -2.9598 39 1 3.6616 -2.2953 1.0355 40 1 4.2430 -0.6072 1.0620 41 1 2.3436 1.0069 2.2740 42 1 2.5869 2.1784 5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939592930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:48 Heat of formation + Delta-G solvation = -123.732157 kcal Electronic energy + Delta-G solvation = -29761.506703 eV Core-core repulsion = 25099.653527 eV Total energy + Delta-G solvation = -4661.853176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 8.33 seconds Orbital eigenvalues (eV) -50.36786 -47.88702 -47.82143 -40.64077 -38.88564 -37.57411 -34.28964 -33.25162 -31.91802 -31.40160 -30.80009 -27.92423 -26.85972 -25.98082 -24.44438 -23.47878 -22.45843 -21.44881 -20.19640 -20.02726 -18.69434 -18.58672 -18.36381 -17.28158 -16.80752 -16.23343 -16.11054 -15.49157 -15.07063 -14.82960 -14.72634 -14.47583 -14.35747 -14.27700 -14.13307 -13.98478 -13.90264 -13.69354 -13.53021 -13.28294 -13.10363 -12.87535 -12.61605 -12.46353 -12.29983 -11.83940 -11.70004 -11.43977 -11.21225 -11.02882 -10.71286 -10.55200 -10.35575 -10.11937 -9.98832 -9.81452 -9.49722 -9.32866 -9.08766 -8.50691 -7.21774 -5.96079 -3.27993 0.49697 0.82159 2.40811 2.65996 2.99584 3.31291 3.37759 3.39469 3.49298 3.51384 3.80884 4.20886 4.32733 4.43948 4.60263 4.71188 4.81655 4.93070 5.02279 5.08751 5.12912 5.30946 5.43499 5.48701 5.57248 5.59387 5.70968 5.74423 5.80253 5.89986 5.97669 6.03219 6.06826 6.09360 6.21147 6.33061 6.36071 6.47597 6.52343 6.71925 7.51826 7.58243 8.15172 8.20976 9.33184 9.85565 10.20430 11.25383 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012594 B = 0.003005 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.796666 B = 9314.113844 C =11113.556360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.113 3.887 5 N -0.604 5.604 6 C 0.571 3.429 7 O -0.546 6.546 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.125 4.125 11 C -0.051 4.051 12 C -0.199 4.199 13 C 0.512 3.488 14 F -0.176 7.176 15 F -0.178 7.178 16 F -0.176 7.176 17 C -0.016 4.016 18 C 0.057 3.943 19 C 0.176 3.824 20 H 0.072 0.928 21 N -0.710 5.710 22 C -0.254 4.254 23 H 0.073 0.927 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.181 0.819 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.388 0.612 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -9.057 -10.821 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.336 5.336 6 C 0.360 3.640 7 O -0.425 6.425 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.143 4.143 11 C -0.070 4.070 12 C -0.201 4.201 13 C 0.458 3.542 14 F -0.157 7.157 15 F -0.159 7.159 16 F -0.157 7.157 17 C -0.035 4.035 18 C -0.069 4.069 19 C 0.063 3.937 20 H 0.090 0.910 21 N -0.349 5.349 22 C -0.385 4.385 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.573 5.573 26 Si 0.738 3.262 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.197 0.803 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.222 0.778 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.771 -9.073 -11.330 16.465 hybrid contribution 0.485 -0.176 0.869 1.011 sum 8.256 -9.249 -10.461 16.222 Atomic orbital electron populations 1.21594 0.93678 1.01891 1.01869 1.22670 0.96510 0.99858 0.94441 0.89714 1.22326 0.82073 0.98394 0.98126 1.48345 1.12157 1.65308 1.07838 1.17787 0.82496 0.78126 0.85566 1.90758 1.82059 1.55135 1.14592 1.19858 0.95412 1.04048 0.93905 1.23419 0.98893 0.92783 0.95494 1.21272 0.93155 0.99059 1.00776 1.21181 0.99561 0.94944 0.91281 1.19847 0.95924 1.09801 0.94481 1.18220 0.81406 0.75382 0.79235 1.93233 1.71498 1.57579 1.93429 1.93187 1.80144 1.60742 1.81816 1.93203 1.84254 1.88121 1.50130 1.20972 0.89983 0.91393 1.01152 1.23864 1.03799 1.01184 0.78043 1.21318 0.91297 0.94051 0.87041 0.91025 1.42378 1.86212 1.06258 1.00080 1.19239 1.43499 0.92632 0.83121 0.90874 1.24773 1.01991 0.95400 0.98019 1.69656 1.55475 1.02871 1.29328 0.86207 0.77697 0.78029 0.84306 1.21547 1.21689 1.20605 0.92751 0.91334 0.93120 0.90582 0.91304 0.80265 0.83863 0.84414 0.83617 0.91094 0.89668 0.77775 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.30 37.16 0.35 -1.37 16 2 C -0.11 -1.65 3.27 -88.47 -0.29 -1.94 16 3 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 4 C 0.11 1.56 6.40 -2.53 -0.02 1.54 16 5 N -0.60 -8.99 3.33 -175.74 -0.58 -9.57 16 6 C 0.57 9.08 7.81 -12.33 -0.10 8.98 16 7 O -0.55 -10.04 16.60 5.32 0.09 -9.95 16 8 C -0.13 -1.79 5.87 -104.96 -0.62 -2.40 16 9 C -0.09 -1.09 8.61 -39.18 -0.34 -1.43 16 10 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 11 C -0.05 -0.52 9.39 -39.49 -0.37 -0.89 16 12 C -0.20 -2.27 5.45 -104.68 -0.57 -2.85 16 13 C 0.51 5.63 3.36 36.00 0.12 5.75 16 14 F -0.18 -2.03 17.30 2.25 0.04 -1.99 16 15 F -0.18 -1.87 16.45 2.25 0.04 -1.83 16 16 F -0.18 -2.03 16.46 2.25 0.04 -2.00 16 17 C -0.02 -0.21 8.94 -39.18 -0.35 -0.56 16 18 C 0.06 0.84 4.63 -3.05 -0.01 0.83 16 19 C 0.18 2.92 3.08 -66.08 -0.20 2.72 16 20 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 21 N -0.71 -15.23 5.15 -51.64 -0.27 -15.50 16 22 C -0.25 -6.17 9.96 -15.06 -0.15 -6.32 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 25 N -0.93 -25.63 13.06 55.49 0.72 -24.91 16 26 Si 0.91 20.47 29.55 -169.99 -5.02 15.45 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.06 7.98 -51.93 -0.41 0.64 16 34 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.18 2.28 2.75 -57.82 -0.16 2.12 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.07 7.58 -52.49 -0.40 0.68 16 38 H 0.15 1.89 7.21 -52.49 -0.38 1.51 16 39 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 40 H 0.09 1.36 6.61 -51.93 -0.34 1.02 16 41 H 0.39 9.07 7.76 -40.82 -0.32 8.76 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -28.36 360.06 -7.41 -35.77 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.84 Total: 8.95 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -3.04 Total: 0.14 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.13 Total: -49.98 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.36 -7.41 -35.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939592930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.964 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.33 seconds