Wall clock time and date at job start Wed Apr 1 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49736 * 2 1 4 4 C 1.53187 * 109.49780 * 239.90218 * 2 1 3 5 5 N 1.46927 * 108.77773 * 185.41544 * 4 2 1 6 6 C 1.36937 * 120.62980 * 233.63185 * 5 4 2 7 7 H 1.08003 * 119.99571 * 151.83449 * 6 5 4 8 8 C 1.38804 * 120.00070 * 331.83132 * 6 5 4 9 9 N 1.31620 * 120.00109 * 343.07430 * 8 6 5 10 10 Si 1.86804 * 119.99747 * 163.07590 * 8 6 5 11 11 H 1.48501 * 109.47336 * 60.00430 * 10 8 6 12 12 H 1.48507 * 109.46881 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47187 * 299.99860 * 10 8 6 14 14 C 1.46932 * 118.73618 * 53.60753 * 5 4 2 15 15 C 1.53193 * 108.77481 * 306.39152 * 14 5 4 16 16 C 1.53035 * 109.31094 * 54.63712 * 15 14 5 17 17 H 1.08999 * 109.45440 * 58.64804 * 16 15 14 18 18 N 1.46504 * 109.45898 * 178.61233 * 16 15 14 19 19 C 1.34775 * 119.99845 * 275.06942 * 18 16 15 20 20 O 1.21584 * 120.00392 * 359.97438 * 19 18 16 21 21 C 1.47584 * 119.99782 * 179.72718 * 19 18 16 22 22 C 1.39733 * 120.13128 * 359.97438 * 21 19 18 23 23 C 1.37755 * 119.94608 * 179.79388 * 22 21 19 24 24 C 1.38720 * 120.20874 * 0.46435 * 23 22 21 25 25 F 1.35095 * 119.86567 * 179.76755 * 24 23 22 26 26 C 1.38661 * 120.26743 * 359.78781 * 24 23 22 27 27 F 1.35104 * 119.97259 * 179.97438 * 26 24 23 28 28 C 1.38380 * 120.05420 * 359.97438 * 26 24 23 29 29 F 1.35099 * 120.10882 * 179.97438 * 28 26 24 30 30 H 1.09000 * 109.46994 * 299.93965 * 1 2 3 31 31 H 1.09005 * 109.47014 * 59.93318 * 1 2 3 32 32 H 1.09001 * 109.47435 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58554 * 305.20323 * 4 2 1 34 34 H 1.08998 * 109.58879 * 65.48264 * 4 2 1 35 35 H 0.96997 * 119.99798 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.58749 * 66.18313 * 14 5 4 37 37 H 1.09000 * 109.58394 * 186.46314 * 14 5 4 38 38 H 1.09002 * 109.49755 * 294.68805 * 15 14 5 39 39 H 1.08997 * 109.49403 * 174.58755 * 15 14 5 40 40 H 0.97002 * 119.99721 * 95.07211 * 18 16 15 41 41 H 1.08003 * 120.02794 * 0.02562 * 22 21 19 42 42 H 1.07996 * 119.89673 * 180.20874 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 -1.2493 5 7 3.5046 -0.8295 -1.1693 6 6 4.2936 -0.3792 -2.1939 7 1 5.2961 -0.0324 -1.9912 8 6 3.8049 -0.3684 -3.4931 9 7 2.7417 -1.0801 -3.8022 10 14 4.6561 0.6562 -4.8027 11 1 6.0616 0.2003 -4.9519 12 1 3.9438 0.4974 -6.0960 13 1 4.6394 2.0858 -4.4012 14 6 4.1052 -1.4268 0.0313 15 6 3.5708 -0.6947 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6968 -1.7569 1.2357 18 7 1.5265 -0.0522 2.4453 19 6 1.3984 -0.7372 3.5990 20 8 1.7093 -1.9117 3.6464 21 6 0.8860 -0.0602 4.8061 22 6 0.5333 1.2910 4.7562 23 6 0.0514 1.9180 5.8841 24 6 -0.0761 1.2148 7.0730 25 9 -0.5450 1.8378 8.1762 26 6 0.2762 -0.1249 7.1338 27 9 0.1501 -0.8040 8.2950 28 6 0.7569 -0.7670 6.0061 29 9 1.1010 -2.0721 6.0643 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6052 -1.7220 -1.2975 34 1 1.7616 -0.1599 -2.1389 35 1 2.4000 -1.0722 -4.7099 36 1 3.8375 -2.4818 0.0875 37 1 5.1897 -1.3270 -0.0145 38 1 3.9159 0.3392 1.2540 39 1 3.9333 -1.1891 2.1675 40 1 1.2781 0.8847 2.4074 41 1 0.6349 1.8423 3.8330 42 1 -0.2241 2.9615 5.8437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942585711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:04 Heat of formation + Delta-G solvation = -140.144547 kcal Electronic energy + Delta-G solvation = -29902.245224 eV Core-core repulsion = 25239.680353 eV Total energy + Delta-G solvation = -4662.564870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.93669 -50.33999 -49.62222 -41.46603 -39.78494 -38.82841 -36.21226 -34.14921 -33.49029 -32.24506 -31.79330 -30.82458 -27.52133 -27.04887 -25.42098 -24.39452 -23.75347 -22.49702 -21.80373 -21.05279 -19.74142 -19.15820 -19.06104 -18.61223 -17.98640 -17.70185 -17.28130 -16.88925 -16.70024 -16.60866 -16.18490 -15.93469 -15.80442 -15.61891 -15.55305 -15.47687 -15.15857 -14.67773 -14.59102 -14.28147 -14.20672 -13.52259 -13.35625 -13.19562 -13.02264 -13.00171 -12.89384 -12.82685 -12.52797 -12.42888 -12.03961 -11.83442 -11.71603 -11.56585 -11.29445 -11.05054 -10.53751 -10.27393 -10.15717 -9.96847 -8.68927 -7.86103 -5.32100 -0.84684 -0.44648 1.42316 1.50888 1.51791 1.59231 1.82568 2.20437 2.27301 2.53485 2.94893 2.99572 3.23958 3.29733 3.34745 3.54562 3.66688 3.79333 4.03655 4.20113 4.23127 4.35896 4.36845 4.59871 4.62959 4.64264 4.72794 4.75715 4.77539 4.87350 4.97129 5.01938 5.09901 5.16475 5.32645 5.35996 5.39762 5.49201 5.53447 5.67909 5.77102 6.40297 6.46760 7.12291 7.16371 7.85680 8.38469 9.20524 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.002402 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.415318 B =11655.908955 C =12060.508391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.187 3.813 5 N -0.609 5.609 6 C -0.264 4.264 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.968 3.032 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.273 1.273 14 C 0.143 3.857 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.056 0.944 18 N -0.691 5.691 19 C 0.555 3.445 20 O -0.570 6.570 21 C -0.159 4.159 22 C -0.014 4.014 23 C -0.113 4.113 24 C 0.126 3.874 25 F -0.117 7.117 26 C 0.006 3.994 27 F -0.129 7.129 28 C 0.130 3.870 29 F -0.121 7.121 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.038 0.962 33 H -0.012 1.012 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.003 0.997 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.417 0.583 41 H 0.197 0.803 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 12.268 20.376 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 H 0.101 0.899 4 C 0.061 3.939 5 N -0.332 5.332 6 C -0.395 4.395 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.796 3.204 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.199 1.199 14 C 0.017 3.983 15 C -0.166 4.166 16 C 0.064 3.936 17 H 0.074 0.926 18 N -0.343 5.343 19 C 0.342 3.658 20 O -0.450 6.450 21 C -0.164 4.164 22 C -0.032 4.032 23 C -0.131 4.131 24 C 0.105 3.895 25 F -0.095 7.095 26 C -0.015 4.015 27 F -0.107 7.107 28 C 0.108 3.892 29 F -0.099 7.099 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.006 0.994 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.256 0.744 41 H 0.214 0.786 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.597 11.357 20.320 24.815 hybrid contribution 0.397 -0.537 -0.403 0.780 sum -8.200 10.820 19.917 24.104 Atomic orbital electron populations 1.21715 0.93403 1.01473 1.02672 1.21902 0.96617 1.00216 0.93923 0.89875 1.20621 0.82370 0.95596 0.95341 1.44368 1.02353 1.69784 1.16729 1.19480 0.98454 1.34913 0.86604 0.91482 1.25801 0.99432 1.00144 0.98965 1.70180 1.27246 1.41671 1.18976 0.85343 0.77801 0.79251 0.78028 1.20544 1.22201 1.19861 1.20964 0.96888 0.93768 0.86672 1.22197 0.95299 1.01569 0.97557 1.20718 0.93214 0.96245 0.83388 0.92566 1.45791 1.64829 1.15077 1.08642 1.18131 0.78063 0.86023 0.83582 1.90872 1.51230 1.17716 1.85146 1.19992 1.07954 0.96646 0.91779 1.21620 0.90842 0.89900 1.00827 1.21567 0.99780 1.03560 0.88186 1.17798 0.98303 0.87707 0.85665 1.91595 1.85289 1.81428 1.51166 1.17627 1.10246 0.91252 0.82378 1.91542 1.94193 1.79723 1.45275 1.17657 0.99160 0.79248 0.93095 1.91600 1.89017 1.32567 1.96701 0.89876 0.92361 0.94238 0.99371 0.91803 0.94036 0.97944 0.92439 0.90724 0.92288 0.74359 0.78609 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.03 71.98 0.65 -2.81 16 2 C -0.11 -3.38 2.46 -10.72 -0.03 -3.40 16 3 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 4 C 0.19 8.51 4.58 86.36 0.40 8.90 16 5 N -0.61 -29.79 2.99 -699.10 -2.09 -31.88 16 6 C -0.26 -14.13 9.58 84.03 0.81 -13.33 16 7 H 0.07 3.49 7.89 -2.91 -0.02 3.46 16 8 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16 9 N -0.93 -54.04 11.19 21.65 0.24 -53.79 16 10 Si 0.97 43.37 29.59 68.60 2.03 45.40 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.14 6.05 6.52 86.36 0.56 6.61 16 15 C -0.13 -4.22 5.65 30.67 0.17 -4.05 16 16 C 0.17 5.22 1.88 45.02 0.08 5.30 16 17 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 18 N -0.69 -14.89 4.32 -445.53 -1.92 -16.81 16 19 C 0.55 14.25 7.73 86.71 0.67 14.92 16 20 O -0.57 -20.90 15.00 -3.98 -0.06 -20.96 16 21 C -0.16 -2.90 5.88 -20.05 -0.12 -3.01 16 22 C -0.01 -0.10 9.53 22.52 0.21 0.12 16 23 C -0.11 -0.57 10.00 22.27 0.22 -0.35 16 24 C 0.13 1.59 7.31 22.49 0.16 1.75 16 25 F -0.12 -1.62 17.17 44.97 0.77 -0.85 16 26 C 0.01 0.12 7.30 22.40 0.16 0.28 16 27 F -0.13 -2.97 17.09 44.97 0.77 -2.20 16 28 C 0.13 2.95 7.29 22.70 0.17 3.12 16 29 F -0.12 -3.68 15.46 44.97 0.70 -2.99 16 30 H 0.08 1.46 7.36 -2.39 -0.02 1.44 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 35 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.42 5.16 6.33 -92.71 -0.59 4.57 16 41 H 0.20 -0.17 6.40 -2.91 -0.02 -0.19 16 42 H 0.21 -0.65 8.06 -2.91 -0.02 -0.67 16 Total: -1.00 -74.52 356.69 5.47 -69.05 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 0.49 Total: 3.14 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.55 Total: 11.89 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -3.77 Total: -102.49 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.96 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 2.24 Total: -6.04 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.52 5.47 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942585711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.098 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds