Wall clock time and date at job start Wed Apr 1 2020 02:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86801 * 119.99895 * 162.77019 * 8 6 5 11 11 H 1.48500 * 109.47233 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47043 * 120.00541 * 10 8 6 13 13 H 1.48499 * 109.47564 * 240.00214 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09003 * 109.45585 * 58.64165 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21587 * 120.00201 * 0.02562 * 19 18 16 21 21 C 1.47548 * 120.00021 * 180.02562 * 19 18 16 22 22 C 1.39921 * 120.17982 * 89.72390 * 21 19 18 23 23 F 1.35102 * 120.07502 * 359.97438 * 22 21 19 24 24 C 1.38173 * 119.85669 * 179.79184 * 22 21 19 25 25 C 1.38343 * 120.20594 * 0.46491 * 24 22 21 26 26 C 1.38435 * 120.36196 * 359.78199 * 25 24 22 27 27 F 1.35105 * 119.93098 * 179.97438 * 26 25 24 28 28 C 1.38443 * 120.14669 * 359.97438 * 26 25 24 29 29 F 1.35098 * 120.11508 * 179.97438 * 28 26 25 30 30 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 31 31 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 32 32 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 34 34 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 35 35 H 0.96994 * 120.00524 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.58258 * 66.43251 * 14 5 4 37 37 H 1.09006 * 109.58702 * 186.71184 * 14 5 4 38 38 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 39 39 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 40 40 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 41 41 H 1.07997 * 119.89560 * 180.22468 * 24 22 21 42 42 H 1.08007 * 119.81549 * 179.76552 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6786 -4.7945 11 1 5.8192 1.3697 -4.1937 12 1 5.1095 -0.2000 -5.9001 13 1 3.6982 1.6866 -5.3263 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2357 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7077 -1.9119 3.6460 21 6 0.8787 -0.0622 4.8038 22 6 -0.4959 -0.0459 5.0644 23 9 -1.3538 -0.6485 4.2123 24 6 -0.9738 0.5846 6.1972 25 6 -0.0985 1.2076 7.0688 26 6 1.2627 1.2012 6.8168 27 9 2.1097 1.8128 7.6735 28 6 1.7581 0.5696 5.6889 29 9 3.0866 0.5643 5.4433 30 1 -0.3633 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7646 -0.1502 -2.1344 34 1 1.6021 -1.7153 -1.2969 35 1 2.3898 -1.0447 -4.7096 36 1 3.8375 -2.4818 0.0876 37 1 5.1898 -1.3268 -0.0144 38 1 3.9334 -1.1890 2.1675 39 1 3.9164 0.3392 1.2543 40 1 1.2790 0.8850 2.4076 41 1 -2.0344 0.5945 6.4009 42 1 -0.4793 1.7018 7.9504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942585771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:19 Heat of formation + Delta-G solvation = -123.238883 kcal Electronic energy + Delta-G solvation = -30344.973062 eV Core-core repulsion = 25683.141276 eV Total energy + Delta-G solvation = -4661.831786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.97623 -49.50424 -49.04152 -40.23797 -38.82824 -37.56956 -34.61065 -32.66200 -31.90109 -31.63986 -30.57276 -29.35496 -26.03734 -25.63633 -24.41531 -23.44626 -22.32718 -20.93201 -20.71639 -19.59437 -18.76777 -18.39270 -18.21534 -17.10973 -16.99648 -16.60190 -16.28287 -16.10639 -15.86054 -15.39435 -15.01850 -14.97112 -14.82820 -14.55609 -14.21390 -13.84327 -13.64838 -13.58966 -13.18286 -12.93492 -12.72831 -12.57336 -12.33742 -12.28463 -12.09055 -11.50437 -11.35352 -11.11270 -10.76941 -10.69919 -10.39941 -10.31387 -10.11170 -10.02521 -9.76120 -9.71487 -9.51883 -9.20686 -8.84366 -8.48276 -6.71192 -5.81157 -3.22870 0.05084 0.17673 2.29745 2.47073 2.86550 3.14806 3.35989 3.44300 3.44689 3.46510 3.82181 3.91171 4.18182 4.33738 4.48092 4.85583 5.00425 5.12194 5.18063 5.20739 5.29144 5.35064 5.42996 5.52760 5.64633 5.83327 6.00347 6.04968 6.07906 6.17515 6.30263 6.39593 6.46601 6.55241 6.65087 6.76536 6.84728 6.96578 7.30450 7.43283 7.62298 7.78786 8.07306 8.42359 9.18841 9.82042 10.38615 11.27726 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.002804 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.905329 B = 9984.485074 C =10608.635069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.252 4.252 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.141 4.141 16 C 0.155 3.845 17 H 0.086 0.914 18 N -0.703 5.703 19 C 0.561 3.439 20 O -0.515 6.515 21 C -0.168 4.168 22 C 0.156 3.844 23 F -0.113 7.113 24 C -0.135 4.135 25 C -0.082 4.082 26 C 0.058 3.942 27 F -0.120 7.120 28 C 0.132 3.868 29 F -0.107 7.107 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.161 0.839 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 6.880 21.958 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.087 0.913 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.021 3.979 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.352 5.352 19 C 0.344 3.656 20 O -0.390 6.390 21 C -0.173 4.173 22 C 0.135 3.865 23 F -0.091 7.091 24 C -0.154 4.154 25 C -0.101 4.101 26 C 0.037 3.963 27 F -0.098 7.098 28 C 0.111 3.889 29 F -0.085 7.085 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.233 0.767 41 H 0.179 0.821 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.599 5.985 21.759 24.524 hybrid contribution 0.512 0.983 -0.678 1.299 sum -9.088 6.968 21.082 23.991 Atomic orbital electron populations 1.21732 0.95729 1.01615 1.00657 1.22113 0.94840 1.00716 0.96608 0.91309 1.20718 0.83100 0.97185 0.93546 1.44104 1.01754 1.69377 1.16302 1.19232 0.97621 1.35437 0.85849 0.91556 1.25030 0.98531 0.99120 0.96955 1.70038 1.25605 1.40190 1.18789 0.86240 0.78928 0.79993 0.81724 1.20255 1.21720 1.21568 1.20871 0.96771 0.94298 0.85961 1.22407 0.94407 1.01599 0.99720 1.21215 0.94117 0.97321 0.82090 0.89628 1.46308 1.64499 1.14354 1.10055 1.17582 0.78881 0.86621 0.82551 1.90861 1.48958 1.15107 1.84110 1.20029 0.92792 1.04865 0.99661 1.17303 0.85052 0.94742 0.89364 1.91624 1.68400 1.80403 1.68688 1.21038 1.02145 0.99271 0.92969 1.21037 0.89744 0.98659 1.00675 1.17464 0.88727 1.00386 0.89697 1.91583 1.69965 1.80422 1.67845 1.17250 0.78570 0.99033 0.94068 1.91634 1.28929 1.94176 1.93743 0.93938 0.92445 0.92874 0.88886 0.96072 0.93647 0.96094 0.92406 0.92554 0.92110 0.76748 0.82147 0.82046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.03 37.16 0.34 -1.79 16 2 C -0.12 -2.19 2.44 -90.72 -0.22 -2.41 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.18 4.17 4.57 -3.93 -0.02 4.16 16 5 N -0.59 -14.71 3.00 -172.59 -0.52 -15.22 16 6 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 7 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 10 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.19 6.52 -3.72 -0.02 3.16 16 15 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 16 C 0.16 2.70 1.88 -67.89 -0.13 2.57 16 17 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 18 N -0.70 -10.15 4.36 -54.80 -0.24 -10.39 16 19 C 0.56 8.59 6.50 -12.47 -0.08 8.51 16 20 O -0.51 -9.89 16.77 5.29 0.09 -9.80 16 21 C -0.17 -1.98 5.64 -104.87 -0.59 -2.57 16 22 C 0.16 1.48 7.29 -38.98 -0.28 1.19 16 23 F -0.11 -1.25 16.83 2.25 0.04 -1.21 16 24 C -0.14 -0.78 10.01 -39.57 -0.40 -1.18 16 25 C -0.08 -0.44 10.01 -39.47 -0.39 -0.84 16 26 C 0.06 0.49 7.29 -39.43 -0.29 0.21 16 27 F -0.12 -1.12 17.18 2.25 0.04 -1.08 16 28 C 0.13 1.46 7.30 -38.90 -0.28 1.18 16 29 F -0.11 -1.41 16.74 2.25 0.04 -1.37 16 30 H 0.04 0.55 7.36 -51.93 -0.38 0.17 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.40 4.74 8.30 -40.82 -0.34 4.40 16 41 H 0.16 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.16 0.35 8.06 -52.48 -0.42 -0.07 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -31.81 362.10 -7.45 -39.27 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.19 Total: 0.69 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.76 Total: 2.43 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.14 Total: -50.78 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.11 Total: -3.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.81 -7.45 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942585771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.971 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds