Wall clock time and date at job start Wed Apr 1 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52045 * 2 1 4 4 C 1.53186 * 109.49926 * 120.08520 * 2 1 3 5 5 N 1.46924 * 108.77528 * 174.59012 * 4 2 1 6 6 C 1.36939 * 120.63303 * 126.41212 * 5 4 2 7 7 H 1.07999 * 119.99796 * 207.66290 * 6 5 4 8 8 C 1.38804 * 120.00005 * 27.66663 * 6 5 4 9 9 N 1.31621 * 120.00332 * 17.36135 * 8 6 5 10 10 Si 1.86798 * 120.00025 * 197.36635 * 8 6 5 11 11 H 1.48504 * 109.47235 * 59.99954 * 10 8 6 12 12 H 1.48496 * 109.47316 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47173 * 299.99689 * 10 8 6 14 14 C 1.46931 * 118.73922 * 306.38867 * 5 4 2 15 15 C 1.53196 * 108.77185 * 53.60944 * 14 5 4 16 16 C 1.53037 * 109.49541 * 239.92649 * 2 1 3 17 17 H 1.08999 * 109.44686 * 298.69195 * 16 2 1 18 18 N 1.46501 * 109.46530 * 58.65846 * 16 2 1 19 19 C 1.34771 * 120.00221 * 204.78936 * 18 16 2 20 20 O 1.21584 * 119.99958 * 0.28255 * 19 18 16 21 21 C 1.47571 * 119.99883 * 180.27491 * 19 18 16 22 22 C 1.39756 * 120.13309 * 359.97438 * 21 19 18 23 23 C 1.37919 * 119.87246 * 179.97438 * 22 21 19 24 24 F 1.35110 * 119.92017 * 179.97438 * 23 22 21 25 25 C 1.38935 * 120.15088 * 0.02562 * 23 22 21 26 26 F 1.35107 * 119.86770 * 179.97438 * 25 23 22 27 27 C 1.38450 * 120.26778 * 0.02562 * 25 23 22 28 28 C 1.38212 * 120.12004 * 359.74282 * 27 25 23 29 29 F 1.35100 * 120.07388 * 180.27675 * 28 27 25 30 30 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47036 * 300.07313 * 1 2 3 32 32 H 1.08997 * 109.47567 * 60.07561 * 1 2 3 33 33 H 1.08994 * 109.58650 * 54.80060 * 4 2 1 34 34 H 1.08998 * 109.58554 * 294.37279 * 4 2 1 35 35 H 0.96996 * 120.00434 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.58634 * 293.82904 * 14 5 4 37 37 H 1.08994 * 109.58780 * 173.39618 * 14 5 4 38 38 H 1.09002 * 109.49553 * 185.41591 * 15 14 5 39 39 H 1.08997 * 109.49788 * 65.31931 * 15 14 5 40 40 H 0.97001 * 119.99555 * 25.06624 * 18 16 2 41 41 H 1.07990 * 120.05964 * 359.96271 * 22 21 19 42 42 H 1.07997 * 119.93857 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7239 1.2495 5 7 3.5046 -0.8291 1.1694 6 6 4.2936 -0.3793 2.1943 7 1 5.2990 -0.0400 1.9930 8 6 3.8013 -0.3595 3.4920 9 7 2.7377 -1.0696 3.8033 10 14 4.6481 0.6750 4.7966 11 1 4.6315 2.1017 4.3848 12 1 3.9323 0.5250 6.0890 13 1 6.0534 0.2212 4.9530 14 6 4.1054 -1.4266 -0.0310 15 6 3.5709 -0.6948 -1.2661 16 6 2.0408 -0.7229 -1.2484 17 1 1.6967 -1.7571 -1.2352 18 7 1.5264 -0.0528 -2.4453 19 6 1.4024 -0.7368 -3.5999 20 8 1.7125 -1.9115 -3.6468 21 6 0.8900 -0.0601 -4.8071 22 6 0.5321 1.2898 -4.7560 23 6 0.0543 1.9171 -5.8876 24 9 -0.2925 3.2220 -5.8393 25 6 -0.0722 1.2098 -7.0768 26 9 -0.5413 1.8298 -8.1817 27 6 0.2796 -0.1280 -7.1339 28 6 0.7641 -0.7664 -6.0078 29 9 1.1124 -2.0704 -6.0660 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8906 33 1 1.6054 -1.7216 1.2978 34 1 1.7639 -0.1580 2.1388 35 1 2.3934 -1.0555 4.7100 36 1 3.8376 -2.4817 -0.0871 37 1 5.1896 -1.3244 0.0136 38 1 3.9334 -1.1894 -2.1673 39 1 3.9159 0.3391 -1.2541 40 1 1.2790 0.8844 -2.4078 41 1 0.6293 1.8407 -3.8323 42 1 0.1788 -0.6727 -8.0609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942585889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:40 Heat of formation + Delta-G solvation = -122.371926 kcal Electronic energy + Delta-G solvation = -29899.023468 eV Core-core repulsion = 25237.229277 eV Total energy + Delta-G solvation = -4661.794192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.06563 -49.33469 -49.12056 -40.39555 -38.74032 -37.52348 -34.68179 -32.79512 -31.91339 -31.54845 -30.64289 -29.32223 -26.02917 -25.49449 -24.55574 -23.57639 -22.25468 -20.95622 -20.68959 -19.65414 -18.86313 -18.38869 -18.08280 -17.11291 -17.02655 -16.64065 -16.07434 -15.93220 -15.64569 -15.52061 -15.06705 -15.00170 -14.90255 -14.73079 -14.32760 -13.88433 -13.73932 -13.58615 -13.17423 -12.94346 -12.84049 -12.60026 -12.32734 -12.21924 -12.06723 -11.52830 -11.36945 -11.11381 -10.79361 -10.68601 -10.44101 -10.27686 -10.09122 -10.05902 -9.85344 -9.76902 -9.54881 -9.20823 -8.82788 -8.49395 -6.73207 -5.83125 -3.25133 -0.15192 0.20653 2.16457 2.90806 3.02986 3.13860 3.36120 3.37874 3.42138 3.42988 3.75559 3.77219 4.10810 4.43645 4.46283 4.83136 4.92128 4.99641 5.13782 5.22815 5.27767 5.32237 5.40479 5.50280 5.61204 5.80412 5.98713 6.01396 6.05587 6.14868 6.27313 6.37365 6.43440 6.51847 6.61989 6.74071 6.82884 6.94121 7.27865 7.43529 7.60338 7.76153 8.10947 8.40582 9.16883 9.79964 10.36542 11.25682 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002536 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.917476 B =11038.732285 C =11681.902569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.903 3.097 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.147 3.853 15 C -0.141 4.141 16 C 0.156 3.844 17 H 0.086 0.914 18 N -0.711 5.711 19 C 0.554 3.446 20 O -0.517 6.517 21 C -0.148 4.148 22 C -0.065 4.065 23 C 0.053 3.947 24 F -0.120 7.120 25 C 0.122 3.878 26 F -0.115 7.115 27 C -0.174 4.174 28 C 0.183 3.817 29 F -0.098 7.098 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.021 0.979 34 H 0.093 0.907 35 H 0.255 0.745 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.395 0.605 41 H 0.161 0.839 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 5.822 -20.822 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.087 0.913 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.104 0.896 18 N -0.361 5.361 19 C 0.339 3.661 20 O -0.393 6.393 21 C -0.153 4.153 22 C -0.085 4.085 23 C 0.033 3.967 24 F -0.098 7.098 25 C 0.101 3.899 26 F -0.093 7.093 27 C -0.194 4.194 28 C 0.162 3.838 29 F -0.076 7.076 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.230 0.770 41 H 0.179 0.821 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.634 4.951 -20.673 22.587 hybrid contribution 0.128 1.204 0.407 1.278 sum -7.506 6.155 -20.266 22.471 Atomic orbital electron populations 1.21740 0.95810 1.01609 1.00632 1.22191 0.94754 1.00697 0.96733 0.91311 1.20807 0.83075 0.97127 0.93541 1.44103 1.01726 1.69363 1.16317 1.19145 0.97788 1.35603 0.85822 0.91643 1.25036 0.98545 0.99007 0.96976 1.70013 1.25613 1.40073 1.18974 0.86370 0.78976 0.80507 0.80916 1.21043 1.21632 1.20867 1.20878 0.96747 0.94310 0.86032 1.22411 0.94500 1.01496 0.99713 1.21176 0.94033 0.97343 0.82081 0.89595 1.46240 1.65332 1.14304 1.10242 1.17692 0.79101 0.86617 0.82695 1.90883 1.49118 1.15036 1.84313 1.20163 1.06098 0.94034 0.94988 1.21133 0.95836 0.93314 0.98179 1.17391 1.05576 0.80086 0.93670 1.91592 1.89852 1.31512 1.96839 1.17422 0.99207 0.90713 0.82534 1.91595 1.85387 1.82200 1.50157 1.20952 1.04599 0.93346 1.00505 1.17237 0.95038 0.79468 0.92076 1.91675 1.88223 1.31097 1.96567 0.92876 0.92452 0.93979 0.96048 0.88890 0.93510 0.96088 0.92459 0.92528 0.92188 0.77046 0.82121 0.81581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.03 37.16 0.34 -1.67 16 2 C -0.12 -2.09 2.46 -90.50 -0.22 -2.31 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.18 4.05 4.59 -3.72 -0.02 4.04 16 5 N -0.59 -14.32 2.99 -172.33 -0.52 -14.83 16 6 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 7 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.47 11.19 55.49 0.62 -24.85 16 10 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 15 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 16 C 0.16 2.53 1.88 -67.89 -0.13 2.40 16 17 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 18 N -0.71 -8.99 4.31 -54.80 -0.24 -9.23 16 19 C 0.55 7.52 7.73 -12.46 -0.10 7.42 16 20 O -0.52 -9.08 15.00 5.29 0.08 -9.00 16 21 C -0.15 -1.52 5.88 -104.91 -0.62 -2.14 16 22 C -0.07 -0.51 9.51 -39.13 -0.37 -0.88 16 23 C 0.05 0.43 7.29 -39.44 -0.29 0.15 16 24 F -0.12 -1.07 17.17 2.25 0.04 -1.04 16 25 C 0.12 0.97 7.31 -39.25 -0.29 0.68 16 26 F -0.12 -0.97 17.17 2.25 0.04 -0.94 16 27 C -0.17 -1.29 9.99 -39.51 -0.39 -1.69 16 28 C 0.18 1.83 7.28 -38.98 -0.28 1.54 16 29 F -0.10 -1.21 15.54 2.25 0.04 -1.18 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.49 7.36 -51.93 -0.38 0.11 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.39 3.82 6.34 -40.82 -0.26 3.57 16 41 H 0.16 0.91 6.40 -52.49 -0.34 0.57 16 42 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -30.55 356.78 -7.39 -37.95 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.03 Total: 0.54 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.77 Total: 1.07 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.13 Total: -48.91 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.11 Total: -3.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -7.39 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942585889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.426 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds