Wall clock time and date at job start Wed Apr 1 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49371 * 2 1 4 4 C 1.53192 * 109.49576 * 239.93634 * 2 1 3 5 5 N 1.46933 * 108.77284 * 185.41417 * 4 2 1 6 6 C 1.36936 * 120.62631 * 233.58641 * 5 4 2 7 7 H 1.08007 * 119.99919 * 152.61083 * 6 5 4 8 8 C 1.38810 * 120.00324 * 332.61029 * 6 5 4 9 9 N 1.31613 * 120.00010 * 159.31474 * 8 6 5 10 10 Si 1.86802 * 119.99758 * 339.31347 * 8 6 5 11 11 H 1.48500 * 109.46986 * 92.96900 * 10 8 6 12 12 H 1.48496 * 109.46910 * 212.96565 * 10 8 6 13 13 H 1.48493 * 109.47487 * 332.96869 * 10 8 6 14 14 C 1.46922 * 118.73858 * 53.60662 * 5 4 2 15 15 C 1.53193 * 108.77677 * 306.38896 * 14 5 4 16 16 C 1.53035 * 109.33798 * 54.62393 * 15 14 5 17 17 H 1.08998 * 109.48960 * 178.64155 * 16 15 14 18 18 N 1.46507 * 109.43520 * 58.68393 * 16 15 14 19 19 C 1.34770 * 119.99626 * 84.94938 * 18 16 15 20 20 O 1.21597 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.47425 * 119.99787 * 180.02562 * 19 18 16 22 22 C 1.39977 * 120.16426 * 89.72355 * 21 19 18 23 23 F 1.35101 * 120.08102 * 359.97438 * 22 21 19 24 24 C 1.38099 * 119.83625 * 179.79422 * 22 21 19 25 25 C 1.38600 * 120.16152 * 0.47984 * 24 22 21 26 26 F 1.35097 * 119.83479 * 179.72389 * 25 24 22 27 27 C 1.38600 * 120.32921 * 359.75109 * 25 24 22 28 28 C 1.38095 * 120.16626 * 0.02562 * 27 25 24 29 29 F 1.35102 * 120.08453 * 179.97438 * 28 27 25 30 30 H 1.09005 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47413 * 300.00003 * 1 2 3 32 32 H 1.09001 * 109.47337 * 60.00361 * 1 2 3 33 33 H 1.08998 * 109.58443 * 305.19631 * 4 2 1 34 34 H 1.08994 * 109.59111 * 65.48685 * 4 2 1 35 35 H 0.97003 * 119.99881 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.58933 * 66.18027 * 14 5 4 37 37 H 1.09006 * 109.58477 * 186.46484 * 14 5 4 38 38 H 1.09006 * 109.49800 * 174.58824 * 15 14 5 39 39 H 1.08994 * 109.50089 * 294.65123 * 15 14 5 40 40 H 0.97000 * 119.99893 * 264.94883 * 18 16 15 41 41 H 1.07997 * 119.91786 * 180.21023 * 24 22 21 42 42 H 1.08007 * 119.91385 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 3.5046 -0.8288 -1.1698 6 6 4.2935 -0.3786 -2.1946 7 1 5.3005 -0.0436 -1.9938 8 6 3.7991 -0.3530 -3.4914 9 7 4.3570 0.4267 -4.3931 10 14 2.3419 -1.4251 -3.9568 11 1 1.0855 -0.6503 -3.7946 12 1 2.4774 -1.8579 -5.3708 13 1 2.3043 -2.6193 -3.0750 14 6 4.1052 -1.4267 0.0304 15 6 3.5709 -0.6953 1.2658 16 6 2.0408 -0.7227 1.2486 17 1 1.6582 -0.2239 2.1390 18 7 1.5783 -2.1128 1.2314 19 6 1.4502 -2.7945 2.3869 20 8 1.7190 -2.2562 3.4436 21 6 0.9854 -4.1935 2.3696 22 6 1.9083 -5.2400 2.2586 23 9 3.2291 -4.9712 2.1665 24 6 1.4657 -6.5481 2.2474 25 6 0.1107 -6.8256 2.3356 26 9 -0.3154 -8.1075 2.3184 27 6 -0.8095 -5.7944 2.4409 28 6 -0.3815 -4.4816 2.4580 29 9 -1.2799 -3.4777 2.5602 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6052 -1.7212 -1.2985 34 1 1.7616 -0.1586 -2.1391 35 1 4.0113 0.4450 -5.2992 36 1 3.8376 -2.4818 0.0861 37 1 5.1898 -1.3267 -0.0153 38 1 3.9335 -1.1902 2.1668 39 1 3.9164 0.3384 1.2545 40 1 1.3643 -2.5423 0.3885 41 1 2.1769 -7.3567 2.1653 42 1 -1.8639 -6.0183 2.5088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942589439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:51 Heat of formation + Delta-G solvation = -116.453844 kcal Electronic energy + Delta-G solvation = -31074.196077 eV Core-core repulsion = 26412.658513 eV Total energy + Delta-G solvation = -4661.537564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.64326 -49.57408 -49.49705 -40.36378 -38.89878 -37.73759 -34.46834 -32.65751 -32.03498 -31.34502 -31.18954 -30.03402 -26.31334 -25.47582 -24.40350 -23.73446 -22.63541 -21.28421 -20.94674 -19.13898 -19.01276 -18.40451 -18.27557 -16.98199 -16.75220 -16.48168 -16.45118 -16.03539 -15.81372 -15.75901 -15.49998 -15.15337 -14.92794 -14.78348 -14.37483 -14.19107 -13.72662 -13.48983 -13.34636 -13.09453 -12.80575 -12.77786 -12.47059 -12.27510 -12.18609 -11.98415 -11.58148 -11.40926 -11.26000 -10.74288 -10.58021 -10.31864 -10.18919 -10.04596 -9.75592 -9.52937 -9.50712 -9.41930 -8.93335 -8.66228 -7.03444 -6.00029 -3.36067 0.06656 0.26277 2.32361 2.49113 2.89471 3.07516 3.24341 3.40804 3.43316 3.58379 3.63542 4.14965 4.18609 4.34174 4.46298 4.86038 4.94019 5.04862 5.06832 5.13409 5.15593 5.24459 5.26155 5.32876 5.41313 5.61131 5.80977 5.85429 5.91322 5.97936 6.03029 6.11434 6.21232 6.33913 6.34347 6.53643 6.58091 6.62953 6.65505 6.87364 7.43492 7.90485 8.05643 8.28302 8.88345 9.66378 10.03440 11.16044 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003838 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.049466 B = 7292.868334 C = 7651.396451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.132 3.868 5 N -0.604 5.604 6 C -0.260 4.260 7 H 0.087 0.913 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.150 3.850 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.083 0.917 18 N -0.698 5.698 19 C 0.566 3.434 20 O -0.522 6.522 21 C -0.208 4.208 22 C 0.200 3.800 23 F -0.106 7.106 24 C -0.203 4.203 25 C 0.178 3.822 26 F -0.118 7.118 27 C -0.204 4.204 28 C 0.196 3.804 29 F -0.110 7.110 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.164 0.836 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 -12.962 13.998 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 H 0.110 0.890 4 C 0.006 3.994 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.549 5.549 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.197 1.197 14 C 0.025 3.975 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.101 0.899 18 N -0.349 5.349 19 C 0.349 3.651 20 O -0.398 6.398 21 C -0.213 4.213 22 C 0.179 3.821 23 F -0.084 7.084 24 C -0.222 4.222 25 C 0.158 3.842 26 F -0.096 7.096 27 C -0.224 4.224 28 C 0.175 3.825 29 F -0.088 7.088 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.239 0.761 41 H 0.181 0.819 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.818 -12.481 14.552 22.013 hybrid contribution -0.954 -0.874 -0.859 1.553 sum -11.772 -13.355 13.693 22.459 Atomic orbital electron populations 1.21797 0.95450 1.01421 1.01647 1.21977 0.94978 1.01240 0.95748 0.89001 1.21360 0.85156 0.96627 0.96278 1.44364 1.00442 1.70141 1.17807 1.18933 0.98578 1.36190 0.85103 0.89587 1.25272 0.97885 0.98621 0.95658 1.69832 1.43174 1.37759 1.04181 0.86995 0.82711 0.82376 0.76885 1.21580 1.23087 1.19725 1.20887 0.97324 0.93929 0.85404 1.22386 0.94405 1.02402 0.99505 1.21038 0.94820 0.79863 0.98827 0.89897 1.46184 1.65892 1.14567 1.08290 1.17528 0.78354 0.84361 0.84866 1.90827 1.49685 1.68825 1.30464 1.20104 0.92794 0.95825 1.12619 1.16793 0.78036 0.91189 0.96085 1.91654 1.29974 1.94433 1.92326 1.21030 0.95734 0.96649 1.08836 1.16901 0.91093 0.78865 0.97385 1.91592 1.90302 1.34615 1.93074 1.20988 1.02252 0.90017 1.09125 1.16756 0.84418 0.84578 0.96721 1.91622 1.65881 1.58871 1.92442 0.93194 0.92800 0.92354 0.96380 0.90457 0.92730 0.96117 0.91753 0.91979 0.90626 0.76100 0.81867 0.81969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.05 37.16 0.34 -1.68 16 2 C -0.12 -1.95 2.67 -90.50 -0.24 -2.19 16 3 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 4 C 0.13 2.66 3.19 -3.71 -0.01 2.65 16 5 N -0.60 -13.64 2.77 -172.32 -0.48 -14.12 16 6 C -0.26 -7.04 10.03 -15.06 -0.15 -7.19 16 7 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 8 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 9 N -0.91 -27.24 13.97 55.49 0.78 -26.47 16 10 Si 0.88 21.54 24.35 -169.99 -4.14 17.40 16 11 H -0.29 -6.76 6.62 56.52 0.37 -6.39 16 12 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.27 -6.45 6.64 56.52 0.38 -6.07 16 14 C 0.15 2.90 6.26 -3.71 -0.02 2.88 16 15 C -0.15 -2.47 5.77 -26.61 -0.15 -2.62 16 16 C 0.16 2.49 2.22 -67.89 -0.15 2.34 16 17 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 18 N -0.70 -10.38 3.59 -54.84 -0.20 -10.57 16 19 C 0.57 8.52 6.50 -12.52 -0.08 8.44 16 20 O -0.52 -9.39 16.77 5.28 0.09 -9.30 16 21 C -0.21 -2.54 5.64 -104.85 -0.59 -3.13 16 22 C 0.20 2.20 7.29 -38.98 -0.28 1.91 16 23 F -0.11 -1.35 16.83 2.25 0.04 -1.31 16 24 C -0.20 -1.68 9.99 -39.50 -0.39 -2.08 16 25 C 0.18 1.40 7.30 -39.31 -0.29 1.11 16 26 F -0.12 -0.92 17.26 2.25 0.04 -0.88 16 27 C -0.20 -1.60 9.99 -39.50 -0.39 -2.00 16 28 C 0.20 2.03 7.29 -38.98 -0.28 1.75 16 29 F -0.11 -1.25 16.83 2.25 0.04 -1.21 16 30 H 0.05 0.66 7.53 -51.93 -0.39 0.27 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.36 5.58 -51.93 -0.29 0.07 16 34 H 0.08 1.75 4.50 -51.93 -0.23 1.51 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 37 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.40 5.81 6.71 -40.82 -0.27 5.54 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -31.08 351.89 -6.30 -37.38 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.97 Total: 2.98 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.80 Total: 0.78 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.10 Total: -51.16 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.11 Total: -3.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.08 -6.30 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942589439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.071 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds