Wall clock time and date at job start Wed Apr 1 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49371 * 2 1 4 4 C 1.53192 * 109.49576 * 239.93634 * 2 1 3 5 5 N 1.46933 * 108.77284 * 185.41417 * 4 2 1 6 6 C 1.36936 * 120.62631 * 233.58641 * 5 4 2 7 7 H 1.08007 * 119.99919 * 152.61083 * 6 5 4 8 8 C 1.38810 * 120.00324 * 332.61029 * 6 5 4 9 9 N 1.31613 * 120.00010 * 159.31474 * 8 6 5 10 10 Si 1.86802 * 119.99758 * 339.31347 * 8 6 5 11 11 H 1.48500 * 109.46986 * 92.96900 * 10 8 6 12 12 H 1.48496 * 109.46910 * 212.96565 * 10 8 6 13 13 H 1.48493 * 109.47487 * 332.96869 * 10 8 6 14 14 C 1.46922 * 118.73858 * 53.60662 * 5 4 2 15 15 C 1.53193 * 108.77677 * 306.38896 * 14 5 4 16 16 C 1.53035 * 109.33798 * 54.62393 * 15 14 5 17 17 H 1.08998 * 109.48960 * 178.64155 * 16 15 14 18 18 N 1.46507 * 109.43520 * 58.68393 * 16 15 14 19 19 C 1.34770 * 119.99626 * 84.94938 * 18 16 15 20 20 O 1.21597 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.47425 * 119.99787 * 180.02562 * 19 18 16 22 22 C 1.39977 * 120.16426 * 89.72355 * 21 19 18 23 23 F 1.35101 * 120.08102 * 359.97438 * 22 21 19 24 24 C 1.38099 * 119.83625 * 179.79422 * 22 21 19 25 25 C 1.38600 * 120.16152 * 0.47984 * 24 22 21 26 26 F 1.35097 * 119.83479 * 179.72389 * 25 24 22 27 27 C 1.38600 * 120.32921 * 359.75109 * 25 24 22 28 28 C 1.38095 * 120.16626 * 0.02562 * 27 25 24 29 29 F 1.35102 * 120.08453 * 179.97438 * 28 27 25 30 30 H 1.09005 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47413 * 300.00003 * 1 2 3 32 32 H 1.09001 * 109.47337 * 60.00361 * 1 2 3 33 33 H 1.08998 * 109.58443 * 305.19631 * 4 2 1 34 34 H 1.08994 * 109.59111 * 65.48685 * 4 2 1 35 35 H 0.97003 * 119.99881 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.58933 * 66.18027 * 14 5 4 37 37 H 1.09006 * 109.58477 * 186.46484 * 14 5 4 38 38 H 1.09006 * 109.49800 * 174.58824 * 15 14 5 39 39 H 1.08994 * 109.50089 * 294.65123 * 15 14 5 40 40 H 0.97000 * 119.99893 * 264.94883 * 18 16 15 41 41 H 1.07997 * 119.91786 * 180.21023 * 24 22 21 42 42 H 1.08007 * 119.91385 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2498 5 7 3.5046 -0.8288 -1.1698 6 6 4.2935 -0.3786 -2.1946 7 1 5.3005 -0.0436 -1.9938 8 6 3.7991 -0.3530 -3.4914 9 7 4.3570 0.4267 -4.3931 10 14 2.3419 -1.4251 -3.9568 11 1 1.0855 -0.6503 -3.7946 12 1 2.4774 -1.8579 -5.3708 13 1 2.3043 -2.6193 -3.0750 14 6 4.1052 -1.4267 0.0304 15 6 3.5709 -0.6953 1.2658 16 6 2.0408 -0.7227 1.2486 17 1 1.6582 -0.2239 2.1390 18 7 1.5783 -2.1128 1.2314 19 6 1.4502 -2.7945 2.3869 20 8 1.7190 -2.2562 3.4436 21 6 0.9854 -4.1935 2.3696 22 6 1.9083 -5.2400 2.2586 23 9 3.2291 -4.9712 2.1665 24 6 1.4657 -6.5481 2.2474 25 6 0.1107 -6.8256 2.3356 26 9 -0.3154 -8.1075 2.3184 27 6 -0.8095 -5.7944 2.4409 28 6 -0.3815 -4.4816 2.4580 29 9 -1.2799 -3.4777 2.5602 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6052 -1.7212 -1.2985 34 1 1.7616 -0.1586 -2.1391 35 1 4.0113 0.4450 -5.2992 36 1 3.8376 -2.4818 0.0861 37 1 5.1898 -1.3267 -0.0153 38 1 3.9335 -1.1902 2.1668 39 1 3.9164 0.3384 1.2545 40 1 1.3643 -2.5423 0.3885 41 1 2.1769 -7.3567 2.1653 42 1 -1.8639 -6.0183 2.5088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942589439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:50 Heat of formation + Delta-G solvation = -135.251032 kcal Electronic energy + Delta-G solvation = -31075.011184 eV Core-core repulsion = 26412.658513 eV Total energy + Delta-G solvation = -4662.352672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.37705 -50.35779 -50.26124 -41.56858 -39.92116 -38.95091 -36.09744 -34.07451 -33.68314 -32.59653 -31.88842 -31.38563 -27.67521 -27.19960 -25.43364 -24.46405 -24.17108 -22.63398 -22.25876 -20.47066 -19.91474 -19.33218 -19.16815 -18.80045 -17.65718 -17.34976 -17.25631 -17.14530 -16.84197 -16.63513 -16.50267 -16.46739 -16.07836 -15.89822 -15.58105 -15.50397 -15.18445 -15.05771 -14.73767 -14.44330 -14.03506 -13.84673 -13.61688 -13.53343 -13.17567 -13.09781 -13.02279 -12.93104 -12.66500 -12.34698 -12.13007 -11.99166 -11.69264 -11.57071 -11.37705 -11.26433 -10.66413 -10.22844 -10.20413 -10.18946 -8.94715 -8.16247 -5.49032 -0.68757 -0.43379 1.19807 1.29119 1.41239 1.49853 1.74338 1.97017 2.20566 2.41331 2.85841 2.91860 3.03459 3.25615 3.32359 3.46438 3.58825 3.66074 3.89627 3.97882 4.21367 4.32402 4.33400 4.36852 4.40171 4.42068 4.49763 4.55983 4.62409 4.71207 4.80639 4.83586 4.95757 4.98507 5.04484 5.18619 5.24980 5.28750 5.34640 5.46228 5.86205 6.12486 6.25941 6.89514 6.89994 7.60650 8.00470 9.03705 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003838 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.049466 B = 7292.868334 C = 7651.396451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.083 0.917 4 C 0.128 3.872 5 N -0.615 5.615 6 C -0.251 4.251 7 H 0.049 0.951 8 C -0.033 4.033 9 N -0.957 5.957 10 Si 0.943 3.057 11 H -0.270 1.270 12 H -0.313 1.313 13 H -0.256 1.256 14 C 0.151 3.849 15 C -0.137 4.137 16 C 0.165 3.835 17 H 0.089 0.911 18 N -0.695 5.695 19 C 0.569 3.431 20 O -0.556 6.556 21 C -0.227 4.227 22 C 0.184 3.816 23 F -0.122 7.122 24 C -0.187 4.187 25 C 0.187 3.813 26 F -0.112 7.112 27 C -0.184 4.184 28 C 0.189 3.811 29 F -0.118 7.118 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.262 0.738 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.407 0.593 41 H 0.186 0.814 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 -15.378 15.213 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.101 0.899 4 C 0.003 3.997 5 N -0.339 5.339 6 C -0.380 4.380 7 H 0.067 0.933 8 C -0.227 4.227 9 N -0.603 5.603 10 Si 0.772 3.228 11 H -0.196 1.196 12 H -0.242 1.242 13 H -0.180 1.180 14 C 0.026 3.974 15 C -0.177 4.177 16 C 0.060 3.940 17 H 0.107 0.893 18 N -0.346 5.346 19 C 0.354 3.646 20 O -0.435 6.435 21 C -0.232 4.232 22 C 0.163 3.837 23 F -0.100 7.100 24 C -0.207 4.207 25 C 0.167 3.833 26 F -0.090 7.090 27 C -0.203 4.203 28 C 0.168 3.832 29 F -0.096 7.096 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.243 0.757 41 H 0.204 0.796 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.657 -14.923 15.805 25.671 hybrid contribution -0.021 -0.162 -1.155 1.167 sum -13.678 -15.085 14.650 25.085 Atomic orbital electron populations 1.21759 0.92946 1.02429 1.02631 1.21826 0.96966 1.00181 0.93993 0.89915 1.21430 0.83554 0.97477 0.97207 1.44426 1.01396 1.70604 1.17514 1.18841 0.97761 1.34896 0.86514 0.93290 1.25898 1.01441 0.99845 0.95560 1.69972 1.45874 1.39883 1.04580 0.85958 0.80046 0.80930 0.75879 1.19600 1.24246 1.18042 1.20942 0.96722 0.94537 0.85164 1.22256 0.95468 1.01796 0.98186 1.20894 0.93736 0.80670 0.98650 0.89270 1.46131 1.65716 1.14123 1.08622 1.17896 0.77296 0.85341 0.84101 1.90803 1.51159 1.69989 1.31540 1.19965 0.93987 0.94264 1.14974 1.16929 0.77281 0.91943 0.97537 1.91614 1.31052 1.94630 1.92702 1.21208 0.96509 0.96008 1.06930 1.16862 0.90846 0.79027 0.96543 1.91621 1.90194 1.34278 1.92893 1.21209 1.03695 0.88657 1.06719 1.16809 0.83541 0.85309 0.97501 1.91604 1.65939 1.59404 1.92635 0.92166 0.91127 0.92130 0.94804 0.92674 0.92952 0.95139 0.92960 0.91468 0.91010 0.75670 0.79629 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.05 71.98 0.65 -2.84 16 2 C -0.11 -3.40 2.67 -10.72 -0.03 -3.43 16 3 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.13 4.99 3.19 86.36 0.28 5.26 16 5 N -0.62 -27.74 2.77 -699.09 -1.94 -29.67 16 6 C -0.25 -13.94 10.03 84.03 0.84 -13.10 16 7 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 8 C -0.03 -1.87 5.23 84.86 0.44 -1.42 16 9 N -0.96 -59.41 13.97 21.65 0.30 -59.10 16 10 Si 0.94 44.49 24.35 68.60 1.67 46.16 16 11 H -0.27 -11.82 6.62 99.48 0.66 -11.16 16 12 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 13 H -0.26 -11.27 6.64 99.48 0.66 -10.61 16 14 C 0.15 5.83 6.26 86.36 0.54 6.37 16 15 C -0.14 -4.53 5.77 30.67 0.18 -4.36 16 16 C 0.16 4.94 2.22 45.02 0.10 5.04 16 17 H 0.09 2.65 7.58 -2.39 -0.02 2.63 16 18 N -0.70 -19.41 3.59 -445.68 -1.60 -21.01 16 19 C 0.57 16.35 6.50 86.66 0.56 16.91 16 20 O -0.56 -19.57 16.77 -4.02 -0.07 -19.64 16 21 C -0.23 -5.12 5.64 -20.01 -0.11 -5.23 16 22 C 0.18 3.69 7.29 22.66 0.17 3.85 16 23 F -0.12 -2.97 16.83 44.97 0.76 -2.21 16 24 C -0.19 -2.52 9.99 22.32 0.22 -2.30 16 25 C 0.19 2.23 7.30 22.44 0.16 2.39 16 26 F -0.11 -1.29 17.26 44.97 0.78 -0.51 16 27 C -0.18 -2.18 9.99 22.32 0.22 -1.95 16 28 C 0.19 3.41 7.29 22.66 0.17 3.58 16 29 F -0.12 -2.38 16.83 44.97 0.76 -1.63 16 30 H 0.06 1.39 7.53 -2.38 -0.02 1.37 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.23 5.58 -2.39 -0.01 1.22 16 34 H 0.06 2.41 4.50 -2.39 -0.01 2.40 16 35 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.03 1.13 7.74 -2.39 -0.02 1.11 16 37 H 0.05 2.10 7.93 -2.38 -0.02 2.09 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.41 10.78 6.71 -92.71 -0.62 10.15 16 41 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -68.94 351.89 5.42 -63.52 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.37 Total: 15.32 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 4.39 Total: 8.77 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -3.24 Total: -109.79 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.07 Total: -19.64 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 2.29 Total: -4.35 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.16 kcal Total: -68.94 5.42 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942589439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.729 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds