Wall clock time and date at job start Wed Apr 1 2020 02:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.51935 * 2 1 4 4 C 1.53187 * 109.49962 * 239.92378 * 2 1 3 5 5 N 1.46920 * 108.77685 * 185.41365 * 4 2 1 6 6 C 1.36937 * 120.63105 * 233.63014 * 5 4 2 7 7 H 1.08005 * 120.00305 * 27.99413 * 6 5 4 8 8 C 1.38817 * 120.00138 * 207.99764 * 6 5 4 9 9 N 1.31616 * 120.00061 * 17.52290 * 8 6 5 10 10 Si 1.86802 * 120.00105 * 197.52134 * 8 6 5 11 11 H 1.48501 * 109.46752 * 94.06482 * 10 8 6 12 12 H 1.48498 * 109.47051 * 214.06686 * 10 8 6 13 13 H 1.48500 * 109.46833 * 334.06808 * 10 8 6 14 14 C 1.46921 * 118.74046 * 53.60356 * 5 4 2 15 15 C 1.53192 * 108.77666 * 306.39404 * 14 5 4 16 16 C 1.53036 * 109.49603 * 120.08117 * 2 1 3 17 17 H 1.09003 * 109.45994 * 61.31899 * 16 2 1 18 18 N 1.46497 * 109.46178 * 301.33967 * 16 2 1 19 19 C 1.34776 * 119.99799 * 155.00018 * 18 16 2 20 20 O 1.21571 * 120.00320 * 0.02562 * 19 18 16 21 21 C 1.47735 * 119.99951 * 179.97438 * 19 18 16 22 22 C 1.39631 * 120.10284 * 180.02562 * 21 19 18 23 23 C 1.38072 * 119.90002 * 179.97438 * 22 21 19 24 24 F 1.35095 * 119.94837 * 179.97438 * 23 22 21 25 25 C 1.38787 * 120.09665 * 359.97438 * 23 22 21 26 26 F 1.35105 * 119.89485 * 180.02562 * 25 23 22 27 27 C 1.38778 * 120.20636 * 0.03864 * 25 23 22 28 28 F 1.35101 * 119.94875 * 179.97438 * 27 25 23 29 29 C 1.38069 * 120.10414 * 359.95874 * 27 25 23 30 30 H 1.08996 * 109.47634 * 299.91702 * 1 2 3 31 31 H 1.09006 * 109.47391 * 59.91927 * 1 2 3 32 32 H 1.09004 * 109.47015 * 179.91301 * 1 2 3 33 33 H 1.09003 * 109.58778 * 305.20261 * 4 2 1 34 34 H 1.08998 * 109.59263 * 65.62210 * 4 2 1 35 35 H 0.96995 * 120.00415 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58677 * 66.17990 * 14 5 4 37 37 H 1.08997 * 109.58762 * 186.45911 * 14 5 4 38 38 H 1.08994 * 109.49631 * 294.67941 * 15 14 5 39 39 H 1.08999 * 109.49774 * 174.58365 * 15 14 5 40 40 H 0.97000 * 119.99955 * 334.99544 * 18 16 2 41 41 H 1.07998 * 120.04492 * 359.70669 * 22 21 19 42 42 H 1.07996 * 120.05577 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2936 -0.3783 -2.1940 7 1 3.9488 0.4254 -2.8279 8 6 5.5366 -0.9544 -2.4180 9 7 5.8205 -2.1296 -1.8980 10 14 6.8062 -0.0616 -3.4574 11 1 7.7030 0.7267 -2.5744 12 1 7.6077 -1.0527 -4.2193 13 1 6.1171 0.8511 -4.4047 14 6 4.1053 -1.4265 0.0307 15 6 3.5708 -0.6949 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6970 -1.7574 1.2351 18 7 1.5264 -0.0530 2.4453 19 6 1.3984 -0.7384 3.5987 20 8 1.7101 -1.9125 3.6459 21 6 0.8803 -0.0626 4.8059 22 6 0.7472 -0.7704 6.0021 23 6 0.2630 -0.1345 7.1279 24 9 0.1334 -0.8186 8.2857 25 6 -0.0907 1.2064 7.0720 26 9 -0.5636 1.8247 8.1762 27 6 0.0395 1.9139 5.8852 28 9 -0.3068 3.2188 5.8364 29 6 0.5229 1.2863 4.7543 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0016 33 1 1.6053 -1.7215 -1.2981 34 1 1.7638 -0.1578 -2.1389 35 1 6.6889 -2.5324 -2.0547 36 1 3.8376 -2.4817 0.0867 37 1 5.1897 -1.3267 -0.0150 38 1 3.9159 0.3389 1.2541 39 1 3.9334 -1.1896 2.1670 40 1 1.2781 0.8839 2.4077 41 1 1.0186 -1.8149 6.0454 42 1 0.6243 1.8377 3.8313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942856364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:00 Heat of formation + Delta-G solvation = -140.247844 kcal Electronic energy + Delta-G solvation = -29639.705161 eV Core-core repulsion = 24977.135811 eV Total energy + Delta-G solvation = -4662.569350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.97347 -50.34512 -49.65369 -41.57892 -39.83446 -38.75775 -36.26395 -34.35644 -32.91437 -32.45981 -31.82503 -31.09893 -27.38471 -27.09829 -25.43806 -24.54945 -23.66435 -22.62671 -21.79775 -21.06812 -19.75386 -19.15080 -18.88823 -18.63363 -17.97985 -17.70882 -17.46546 -16.83768 -16.63902 -16.63133 -16.20227 -16.06546 -16.01733 -15.66698 -15.58400 -15.56551 -15.15581 -14.72766 -14.54228 -14.27127 -13.93794 -13.84673 -13.58055 -13.11292 -13.01236 -12.96314 -12.91248 -12.69076 -12.58290 -12.28973 -12.05387 -12.00134 -11.64465 -11.56001 -11.36015 -11.06833 -10.55863 -10.28528 -10.21869 -9.99592 -8.69339 -7.86316 -5.32030 -0.92286 -0.47105 1.30194 1.48732 1.50210 1.59204 1.83028 2.13898 2.27372 2.52675 2.86978 2.92244 3.15079 3.25662 3.31074 3.65533 3.66990 3.77514 4.05712 4.11308 4.17207 4.20276 4.41920 4.43358 4.51359 4.64258 4.72002 4.75680 4.78059 4.89235 4.93517 5.06284 5.13685 5.17278 5.27138 5.33783 5.43273 5.49609 5.55874 5.66293 5.73373 6.39830 6.44873 7.09780 7.15162 7.86396 8.38276 9.20487 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.002389 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.452271 B =11717.655750 C =11995.791470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.148 3.852 5 N -0.609 5.609 6 C -0.259 4.259 7 H 0.073 0.927 8 C -0.053 4.053 9 N -0.937 5.937 10 Si 0.966 3.034 11 H -0.287 1.287 12 H -0.299 1.299 13 H -0.265 1.265 14 C 0.181 3.819 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.064 0.936 18 N -0.696 5.696 19 C 0.560 3.440 20 O -0.565 6.565 21 C -0.081 4.081 22 C -0.073 4.073 23 C 0.092 3.908 24 F -0.121 7.121 25 C 0.052 3.948 26 F -0.120 7.120 27 C 0.098 3.902 28 F -0.116 7.116 29 C -0.080 4.080 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.010 0.990 34 H 0.064 0.936 35 H 0.249 0.751 36 H -0.011 1.011 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.415 0.585 41 H 0.167 0.833 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 10.101 16.162 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.102 0.898 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.091 0.909 8 C -0.248 4.248 9 N -0.583 5.583 10 Si 0.795 3.205 11 H -0.214 1.214 12 H -0.226 1.226 13 H -0.189 1.189 14 C 0.055 3.945 15 C -0.173 4.173 16 C 0.065 3.935 17 H 0.082 0.918 18 N -0.347 5.347 19 C 0.347 3.653 20 O -0.444 6.444 21 C -0.084 4.084 22 C -0.093 4.093 23 C 0.072 3.928 24 F -0.099 7.099 25 C 0.030 3.970 26 F -0.099 7.099 27 C 0.078 3.922 28 F -0.094 7.094 29 C -0.099 4.099 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.254 0.746 41 H 0.184 0.816 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.689 9.251 16.209 23.751 hybrid contribution 0.860 0.339 -0.042 0.925 sum -13.830 9.590 16.167 23.336 Atomic orbital electron populations 1.21747 0.92600 1.02008 1.03062 1.21780 0.96922 1.00070 0.93347 0.89787 1.21093 0.83392 0.96820 0.96434 1.44354 1.01175 1.71365 1.16337 1.19558 0.98774 1.11752 1.08862 0.90930 1.25827 1.01981 0.95957 1.01038 1.70200 1.22147 1.15854 1.50145 0.85267 0.79221 0.77659 0.78393 1.21368 1.22620 1.18894 1.20476 0.97629 0.92176 0.84233 1.22337 0.95865 1.01091 0.98054 1.20747 0.92572 0.96581 0.83648 0.91818 1.45889 1.64591 1.15113 1.09104 1.18116 0.77882 0.85999 0.83318 1.90845 1.51184 1.17435 1.84960 1.19429 1.01935 0.93553 0.93513 1.21260 0.96165 1.02589 0.89243 1.17076 1.04004 0.88070 0.83666 1.91585 1.93641 1.78780 1.45888 1.17953 1.04223 0.90672 0.84145 1.91570 1.85668 1.82236 1.50395 1.17044 1.02874 0.79613 0.92666 1.91610 1.89634 1.31408 1.96728 1.21490 0.96177 0.93388 0.98871 0.90546 0.91288 0.93471 0.97222 0.91765 0.94217 0.99265 0.92765 0.91690 0.93056 0.74610 0.81583 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.03 71.98 0.65 -2.03 16 2 C -0.10 -2.73 2.46 -10.72 -0.03 -2.76 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.15 5.60 5.80 86.36 0.50 6.10 16 5 N -0.61 -29.27 2.99 -699.12 -2.09 -31.36 16 6 C -0.26 -13.72 9.58 84.03 0.81 -12.91 16 7 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 8 C -0.05 -2.90 4.90 84.86 0.42 -2.48 16 9 N -0.94 -55.45 11.22 21.65 0.24 -55.21 16 10 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 14 C 0.18 8.70 5.31 86.36 0.46 9.16 16 15 C -0.13 -4.86 5.65 30.67 0.17 -4.69 16 16 C 0.17 4.97 1.88 45.02 0.08 5.06 16 17 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 18 N -0.70 -14.25 4.31 -445.38 -1.92 -16.17 16 19 C 0.56 12.83 7.73 86.75 0.67 13.50 16 20 O -0.56 -18.24 16.00 -3.94 -0.06 -18.30 16 21 C -0.08 -1.29 5.87 -20.09 -0.12 -1.41 16 22 C -0.07 -1.20 9.57 22.57 0.22 -0.99 16 23 C 0.09 1.52 7.29 22.36 0.16 1.69 16 24 F -0.12 -2.25 17.17 44.97 0.77 -1.47 16 25 C 0.05 0.83 7.32 22.53 0.16 1.00 16 26 F -0.12 -2.25 17.08 44.97 0.77 -1.49 16 27 C 0.10 1.32 7.29 22.36 0.16 1.49 16 28 F -0.12 -1.69 17.17 44.97 0.77 -0.92 16 29 C -0.08 -0.87 9.51 22.57 0.21 -0.66 16 30 H 0.08 1.07 7.36 -2.39 -0.02 1.06 16 31 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 37 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.42 5.23 6.33 -92.71 -0.59 4.64 16 41 H 0.17 2.85 7.64 -2.91 -0.02 2.83 16 42 H 0.19 0.86 6.40 -2.91 -0.02 0.84 16 Total: -1.00 -68.04 358.57 5.54 -62.50 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.49 Total: 6.34 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.54 Total: 10.08 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.77 Total: -102.74 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.06 Total: -18.30 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 2.31 Total: -3.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -68.04 5.54 -62.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942856364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.744 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds