Wall clock time and date at job start Wed Apr 1 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.59223 * 2 1 4 4 C 1.53194 * 109.70292 * 239.64373 * 2 1 3 5 5 C 1.53036 * 109.31504 * 185.51314 * 4 2 1 6 6 H 1.09005 * 109.44820 * 301.35087 * 5 4 2 7 7 N 1.46505 * 109.46164 * 181.38871 * 5 4 2 8 8 C 1.34771 * 119.99886 * 154.93157 * 7 5 4 9 9 O 1.21592 * 120.00621 * 359.97438 * 8 7 5 10 10 C 1.47548 * 119.99910 * 180.27609 * 8 7 5 11 11 C 1.39925 * 120.18112 * 89.44575 * 10 8 7 12 12 F 1.35100 * 120.07056 * 359.97438 * 11 10 8 13 13 C 1.38169 * 119.85495 * 179.70134 * 11 10 8 14 14 C 1.38343 * 120.20849 * 0.60004 * 13 11 10 15 15 C 1.38439 * 120.35924 * 359.67324 * 14 13 11 16 16 F 1.35101 * 119.92639 * 180.02562 * 15 14 13 17 17 C 1.38444 * 120.14731 * 0.02592 * 15 14 13 18 18 F 1.35095 * 120.10979 * 179.97438 * 17 15 14 19 19 C 1.53039 * 109.53995 * 61.36117 * 5 4 2 20 20 C 1.53191 * 109.31414 * 298.63939 * 19 5 4 21 21 N 1.46919 * 108.77736 * 54.63337 * 20 19 5 22 22 C 1.36936 * 120.63270 * 126.36723 * 21 20 19 23 23 H 1.08002 * 120.00400 * 209.02755 * 22 21 20 24 24 C 1.38811 * 119.99837 * 29.02446 * 22 21 20 25 25 N 1.31624 * 119.99773 * 15.03130 * 24 22 21 26 26 Si 1.86797 * 120.00320 * 195.02733 * 24 22 21 27 27 H 1.48505 * 109.47002 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47405 * 119.99887 * 26 24 22 29 29 H 1.48505 * 109.47318 * 240.00433 * 26 24 22 30 30 H 1.09003 * 109.46537 * 299.71609 * 1 2 3 31 31 H 1.09001 * 109.46730 * 59.71653 * 1 2 3 32 32 H 1.08994 * 109.47161 * 179.71709 * 1 2 3 33 33 H 1.08999 * 109.49815 * 65.55663 * 4 2 1 34 34 H 1.09004 * 109.49644 * 305.46018 * 4 2 1 35 35 H 0.96998 * 119.99360 * 334.92651 * 7 5 4 36 36 H 1.07996 * 119.89686 * 180.29617 * 13 11 10 37 37 H 1.08002 * 119.81968 * 179.69702 * 14 13 11 38 38 H 1.09000 * 109.49680 * 58.59191 * 19 5 4 39 39 H 1.09007 * 109.49431 * 178.68444 * 19 5 4 40 40 H 1.09001 * 109.58679 * 174.42351 * 20 19 5 41 41 H 1.09004 * 109.58728 * 294.70300 * 20 19 5 42 42 H 0.97000 * 119.99514 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8445 -1.1674 6 1 4.0070 0.1518 -1.0963 7 7 4.0710 -1.5117 -2.3719 8 6 5.3349 -1.2948 -2.7865 9 8 6.0597 -0.5449 -2.1614 10 6 5.8370 -1.9620 -4.0030 11 6 5.6863 -1.3518 -5.2531 12 9 5.0794 -0.1487 -5.3504 13 6 6.1645 -1.9798 -6.3871 14 6 6.7803 -3.2149 -6.2916 15 6 6.9290 -3.8292 -5.0599 16 9 7.5323 -5.0351 -4.9766 17 6 6.4609 -3.2104 -3.9133 18 9 6.6059 -3.8108 -2.7118 19 6 3.9601 -1.6609 0.0670 20 6 3.4654 -0.9426 1.3264 21 7 2.0226 -0.6981 1.1954 22 6 1.1533 -1.1134 2.1685 23 1 0.1364 -1.3701 1.9106 24 6 1.5791 -1.2045 3.4866 25 7 2.7006 -0.6237 3.8575 26 14 0.5607 -2.1512 4.7339 27 1 -0.6456 -2.7062 4.0690 28 1 1.3715 -3.2619 5.2943 29 1 0.1466 -1.2386 5.8299 30 1 -0.3632 0.5094 0.8926 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.7689 -0.1673 -2.1365 34 1 1.6080 -1.7257 -1.2905 35 1 3.4927 -2.1097 -2.8707 36 1 6.0528 -1.5073 -7.3518 37 1 7.1474 -3.7024 -7.1827 38 1 3.5036 -2.6490 0.0087 39 1 5.0446 -1.7626 0.1085 40 1 3.6524 -1.5667 2.2003 41 1 3.9904 0.0063 1.4360 42 1 2.9979 -0.6871 4.7786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947670237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:04 Heat of formation + Delta-G solvation = -140.956390 kcal Electronic energy + Delta-G solvation = -30159.181604 eV Core-core repulsion = 25496.581530 eV Total energy + Delta-G solvation = -4662.600075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 6.03 seconds Orbital eigenvalues (eV) -50.77223 -50.26874 -49.82066 -41.38435 -39.77520 -39.02972 -36.26142 -34.30581 -33.34303 -32.45928 -31.30923 -31.02593 -28.05074 -26.88714 -25.69390 -24.12840 -23.81149 -22.77121 -21.70803 -21.10348 -19.70225 -19.22780 -19.12629 -18.30436 -17.97066 -17.70145 -17.32753 -17.11477 -16.88183 -16.67995 -16.20807 -15.92695 -15.76752 -15.69967 -15.56052 -15.55152 -15.22132 -14.93679 -14.61236 -14.39869 -14.15155 -13.49521 -13.36334 -13.08134 -13.00996 -12.94609 -12.76233 -12.72045 -12.64511 -12.40207 -12.08736 -11.90836 -11.75924 -11.57143 -11.54957 -11.10989 -10.59003 -10.43841 -10.22947 -9.88739 -8.67681 -7.84914 -5.31687 -0.62480 -0.47658 1.12037 1.46027 1.48115 1.58067 1.75424 1.92476 2.34389 2.51710 2.75435 3.12530 3.20981 3.31988 3.48815 3.56862 3.58837 3.78716 3.97661 4.12573 4.20495 4.33029 4.42619 4.56751 4.58472 4.65238 4.69418 4.70524 4.75179 4.80649 4.91654 5.00490 5.02295 5.11759 5.31806 5.35368 5.40556 5.49441 5.54400 5.67783 5.72021 6.24459 6.41695 6.90073 7.15292 7.86872 8.39792 9.22837 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002821 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.127230 B = 9922.674119 C =10756.266622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.013 0.987 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.061 0.939 7 N -0.693 5.693 8 C 0.559 3.441 9 O -0.565 6.565 10 C -0.188 4.188 11 C 0.148 3.852 12 F -0.125 7.125 13 C -0.106 4.106 14 C -0.051 4.051 15 C 0.057 3.943 16 F -0.125 7.125 17 C 0.106 3.894 18 F -0.131 7.131 19 C -0.132 4.132 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.083 0.917 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.260 1.260 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.205 0.795 37 H 0.209 0.791 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.057 0.943 41 H -0.012 1.012 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -6.323 -28.545 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.031 0.969 4 C -0.157 4.157 5 C 0.055 3.945 6 H 0.079 0.921 7 N -0.343 5.343 8 C 0.344 3.656 9 O -0.443 6.443 10 C -0.193 4.193 11 C 0.127 3.873 12 F -0.103 7.103 13 C -0.124 4.124 14 C -0.070 4.070 15 C 0.037 3.963 16 F -0.104 7.104 17 C 0.085 3.915 18 F -0.110 7.110 19 C -0.172 4.172 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.793 3.207 27 H -0.184 1.184 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.222 0.778 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.006 0.994 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.069 -5.803 -27.889 28.934 hybrid contribution -0.126 -0.531 1.993 2.066 sum 4.943 -6.334 -25.896 27.114 Atomic orbital electron populations 1.21707 0.93582 1.01786 1.01285 1.20648 0.94907 0.92910 0.86226 0.96943 1.22203 0.91683 1.02544 0.99230 1.20818 0.95549 0.95276 0.82808 0.92120 1.46058 1.12552 1.47640 1.28093 1.18175 0.82491 0.80980 0.83936 1.90842 1.57486 1.38427 1.57594 1.19705 1.08598 0.96353 0.94681 1.17576 0.95696 0.81990 0.92007 1.91593 1.80281 1.41775 1.96637 1.21504 0.97291 0.94802 0.98786 1.21575 0.95314 0.93803 0.96267 1.17697 1.01226 0.83999 0.93386 1.91574 1.80769 1.41108 1.96943 1.17544 1.01620 0.91264 0.81087 1.91571 1.93534 1.82545 1.43331 1.22329 0.98874 0.99723 0.96276 1.20429 0.83786 0.95489 0.94553 1.44442 1.02482 1.65660 1.20128 1.19609 0.95396 1.36128 0.86608 0.89976 1.25894 0.99101 1.01228 0.99074 1.70206 1.25461 1.46600 1.16613 0.85236 0.78591 0.77801 0.79037 1.18405 1.22297 1.22291 0.94022 0.90288 0.92563 0.88896 0.90395 0.74696 0.77787 0.77415 0.91914 0.94088 0.92471 0.99366 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.74 16 2 C 0.16 6.35 3.49 44.98 0.16 6.50 16 3 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.12 -3.66 4.85 30.67 0.15 -3.51 16 5 C 0.16 5.66 2.42 45.02 0.11 5.77 16 6 H 0.06 2.48 7.57 -2.38 -0.02 2.47 16 7 N -0.69 -20.00 5.07 -445.56 -2.26 -22.26 16 8 C 0.56 17.96 6.50 86.70 0.56 18.52 16 9 O -0.56 -23.67 16.77 -4.01 -0.07 -23.74 16 10 C -0.19 -4.40 5.64 -20.02 -0.11 -4.51 16 11 C 0.15 2.41 7.29 22.66 0.17 2.58 16 12 F -0.12 -2.45 16.83 44.97 0.76 -1.69 16 13 C -0.11 -0.67 10.01 22.28 0.22 -0.44 16 14 C -0.05 -0.29 10.01 22.34 0.22 -0.07 16 15 C 0.06 0.86 7.29 22.37 0.16 1.02 16 16 F -0.13 -2.16 17.18 44.97 0.77 -1.39 16 17 C 0.11 2.37 7.30 22.71 0.17 2.53 16 18 F -0.13 -3.80 16.74 44.97 0.75 -3.05 16 19 C -0.13 -5.56 5.65 30.67 0.17 -5.39 16 20 C 0.18 9.51 5.29 86.36 0.46 9.97 16 21 N -0.60 -30.18 2.99 -675.23 -2.02 -32.20 16 22 C -0.25 -13.28 8.60 84.03 0.72 -12.55 16 23 H 0.08 4.16 6.21 -2.91 -0.02 4.14 16 24 C -0.06 -3.30 4.96 84.86 0.42 -2.88 16 25 N -0.94 -57.52 11.14 21.65 0.24 -57.28 16 26 Si 0.96 45.32 29.58 68.60 2.03 47.35 16 27 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 30 H 0.04 1.59 7.62 -2.39 -0.02 1.57 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.89 7.44 -2.39 -0.02 1.88 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.42 8.97 8.59 -92.71 -0.80 8.17 16 36 H 0.21 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.21 -0.62 8.06 -2.91 -0.02 -0.65 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 39 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 40 H 0.06 3.33 6.06 -2.39 -0.01 3.32 16 41 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.19 359.76 4.64 -72.55 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.28 Total: 7.89 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 4.15 Total: 13.81 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.04 Total: -111.74 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.74 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 2.28 Total: -6.12 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.19 4.64 -72.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947670237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.407 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.04 seconds