Wall clock time and date at job start Wed Apr 1 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.58509 * 2 1 4 4 C 1.53197 * 109.58130 * 120.42078 * 2 1 3 5 5 C 1.53045 * 109.30885 * 174.42737 * 4 2 1 6 6 H 1.09000 * 109.45746 * 178.61447 * 5 4 2 7 7 N 1.46493 * 109.46231 * 58.63768 * 5 4 2 8 8 C 1.34783 * 119.99943 * 154.99883 * 7 5 4 9 9 O 1.21607 * 119.99683 * 0.02562 * 8 7 5 10 10 C 1.47420 * 120.00302 * 180.02562 * 8 7 5 11 11 C 1.39981 * 120.16458 * 89.71947 * 10 8 7 12 12 F 1.35105 * 120.07933 * 0.02562 * 11 10 8 13 13 C 1.38099 * 119.83208 * 179.79085 * 11 10 8 14 14 C 1.38594 * 120.16253 * 0.49491 * 13 11 10 15 15 F 1.35106 * 119.83492 * 179.72077 * 14 13 11 16 16 C 1.38601 * 120.33549 * 359.73875 * 14 13 11 17 17 C 1.38097 * 120.16052 * 0.02562 * 16 14 13 18 18 F 1.35105 * 120.08043 * 179.97438 * 17 16 14 19 19 C 1.53043 * 109.53402 * 298.62848 * 5 4 2 20 20 C 1.52765 * 109.38080 * 61.24530 * 19 5 4 21 21 N 1.46922 * 109.00869 * 305.58495 * 20 19 5 22 22 C 1.36940 * 120.63034 * 233.58321 * 21 20 19 23 23 H 1.07998 * 119.99798 * 149.97586 * 22 21 20 24 24 C 1.38810 * 119.99822 * 330.25114 * 22 21 20 25 25 N 1.31613 * 119.99993 * 344.24279 * 24 22 21 26 26 Si 1.86797 * 119.99729 * 164.23873 * 24 22 21 27 27 H 1.48498 * 109.47286 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47054 * 120.00186 * 26 24 22 29 29 H 1.48509 * 109.47234 * 239.99943 * 26 24 22 30 30 H 1.09001 * 109.46923 * 180.28868 * 1 2 3 31 31 H 1.08992 * 109.47317 * 300.28908 * 1 2 3 32 32 H 1.09001 * 109.46661 * 60.29177 * 1 2 3 33 33 H 1.09002 * 109.49505 * 294.37165 * 4 2 1 34 34 H 1.08993 * 109.50095 * 54.47409 * 4 2 1 35 35 H 0.96994 * 120.00247 * 335.00211 * 7 5 4 36 36 H 1.07997 * 119.91779 * 180.20917 * 13 11 10 37 37 H 1.08006 * 119.91975 * 180.02562 * 16 14 13 38 38 H 1.09006 * 109.49539 * 181.31601 * 19 5 4 39 39 H 1.08994 * 109.50096 * 301.38800 * 19 5 4 40 40 H 1.09003 * 109.50587 * 185.70073 * 20 19 5 41 41 H 1.08998 * 109.42865 * 65.41864 * 20 19 5 42 42 H 0.97006 * 120.00035 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7308 1.2447 5 6 3.5675 -0.8493 1.1693 6 1 3.9377 -1.3471 2.0655 7 7 4.1569 0.4885 1.0753 8 6 5.4211 0.6988 1.4930 9 8 6.0724 -0.2221 1.9473 10 6 6.0142 2.0452 1.3989 11 6 5.8827 2.9474 2.4611 12 9 5.2118 2.5867 3.5769 13 6 6.4448 4.2054 2.3674 14 6 7.1287 4.5789 1.2213 15 9 7.6711 5.8133 1.1345 16 6 7.2588 3.6928 0.1636 17 6 6.7064 2.4297 0.2447 18 9 6.8337 1.5674 -0.7876 19 6 3.9569 -1.6657 -0.0652 20 6 3.4645 -0.9504 -1.3220 21 7 2.0226 -0.6982 -1.1952 22 6 1.1538 -1.1110 -2.1698 23 1 0.1395 -1.3773 -1.9115 24 6 1.5783 -1.1926 -3.4889 25 7 2.6895 -0.5934 -3.8608 26 14 0.5725 -2.1530 -4.7360 27 1 -0.6233 -2.7286 -4.0698 28 1 0.1418 -1.2451 -5.8292 29 1 1.3999 -3.2496 -5.3003 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3633 0.5183 0.8873 32 1 -0.3633 0.5093 -0.8926 33 1 1.7659 -0.1692 2.1367 34 1 1.6029 -1.7268 1.2894 35 1 3.6375 1.2230 0.7126 36 1 6.3471 4.9014 3.1874 37 1 7.7936 3.9908 -0.7262 38 1 5.0413 -1.7695 -0.1055 39 1 3.4988 -2.6530 -0.0078 40 1 3.6505 -1.5773 -2.1941 41 1 3.9929 -0.0033 -1.4307 42 1 2.9864 -0.6507 -4.7825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947672882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:10 Heat of formation + Delta-G solvation = -137.213272 kcal Electronic energy + Delta-G solvation = -30831.037578 eV Core-core repulsion = 26168.599817 eV Total energy + Delta-G solvation = -4662.437761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.37357 -50.35061 -50.25034 -41.41687 -39.78934 -38.91142 -35.98563 -34.14648 -33.21098 -32.15062 -31.88117 -31.02477 -28.02423 -26.86128 -25.44507 -24.45067 -23.81150 -22.58271 -22.15466 -20.32928 -19.89307 -19.20239 -19.15742 -18.29523 -17.59252 -17.26149 -17.15395 -17.11337 -16.85912 -16.63019 -16.49458 -16.33268 -16.04796 -15.65341 -15.57106 -15.49064 -15.42373 -14.78947 -14.46202 -14.18248 -13.91912 -13.54469 -13.39037 -13.25464 -13.13172 -12.88829 -12.88011 -12.68902 -12.48426 -12.34637 -12.16163 -11.98086 -11.72644 -11.44723 -11.31882 -11.01266 -10.51740 -10.20859 -10.18630 -10.17623 -8.59450 -7.82348 -5.28104 -0.67694 -0.42638 1.21041 1.45796 1.49298 1.57806 1.76404 2.01175 2.21594 2.53155 2.86491 2.93062 3.29711 3.33595 3.47856 3.59570 3.62486 3.89579 4.03951 4.15780 4.33849 4.37746 4.39787 4.41411 4.43175 4.58321 4.63152 4.71541 4.77449 4.90678 4.93745 5.00754 5.08451 5.14443 5.35374 5.39318 5.44234 5.53007 5.56582 5.73793 5.75749 6.30038 6.44989 6.93013 7.19558 7.91729 8.43429 9.24179 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.003484 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.065523 B = 8035.532500 C = 8796.970255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 H 0.022 0.978 4 C -0.124 4.124 5 C 0.157 3.843 6 H 0.083 0.917 7 N -0.692 5.692 8 C 0.564 3.436 9 O -0.563 6.563 10 C -0.226 4.226 11 C 0.191 3.809 12 F -0.116 7.116 13 C -0.180 4.180 14 C 0.189 3.811 15 F -0.110 7.110 16 C -0.188 4.188 17 C 0.179 3.821 18 F -0.127 7.127 19 C -0.143 4.143 20 C 0.190 3.810 21 N -0.600 5.600 22 C -0.247 4.247 23 H 0.077 0.923 24 C -0.051 4.051 25 N -0.936 5.936 26 Si 0.957 3.043 27 H -0.264 1.264 28 H -0.295 1.295 29 H -0.297 1.297 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.044 0.956 41 H -0.003 1.003 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 11.926 14.149 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.039 0.961 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.101 0.899 7 N -0.342 5.342 8 C 0.349 3.651 9 O -0.442 6.442 10 C -0.231 4.231 11 C 0.171 3.829 12 F -0.095 7.095 13 C -0.199 4.199 14 C 0.169 3.831 15 F -0.088 7.088 16 C -0.208 4.208 17 C 0.159 3.841 18 F -0.105 7.105 19 C -0.183 4.183 20 C 0.064 3.936 21 N -0.325 5.325 22 C -0.377 4.377 23 H 0.094 0.906 24 C -0.246 4.246 25 N -0.583 5.583 26 Si 0.786 3.214 27 H -0.188 1.188 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.213 0.787 37 H 0.201 0.799 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.015 0.985 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.388 11.255 14.323 19.304 hybrid contribution -0.308 -0.496 -1.584 1.689 sum 6.081 10.759 12.739 17.749 Atomic orbital electron populations 1.21731 0.94281 1.01521 1.01159 1.20665 0.94548 0.93048 0.86415 0.96082 1.22250 0.92215 1.02838 0.99039 1.20919 0.94253 0.81896 0.97650 0.89932 1.46125 1.13355 1.12938 1.61812 1.17992 0.82090 0.87431 0.77561 1.90785 1.61682 1.44684 1.47070 1.19971 1.09317 0.96710 0.97109 1.16770 0.92745 0.91847 0.81564 1.91599 1.77141 1.91986 1.48725 1.21204 1.01656 0.96100 1.00940 1.16817 0.93111 0.80290 0.92894 1.91622 1.82813 1.38165 1.96247 1.21196 1.05512 0.91361 1.02708 1.17037 0.96206 0.87996 0.82891 1.91628 1.93504 1.69207 1.56176 1.22317 0.99188 0.99691 0.97080 1.20254 0.83650 0.95592 0.94112 1.44337 1.02580 1.65765 1.19773 1.19525 0.95504 1.36151 0.86538 0.90577 1.25761 0.98997 1.01034 0.98849 1.70185 1.25839 1.45807 1.16423 0.85356 0.78606 0.78052 0.79358 1.18824 1.22258 1.22483 0.93093 0.90450 0.94032 0.89006 0.90125 0.75543 0.78704 0.79886 0.93767 0.91415 0.93716 0.98500 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.95 71.98 0.57 -3.67 16 2 C 0.16 5.80 3.20 44.98 0.14 5.95 16 3 H 0.02 0.79 6.65 -2.39 -0.02 0.77 16 4 C -0.12 -3.73 5.07 30.68 0.16 -3.58 16 5 C 0.16 5.26 2.78 45.02 0.13 5.39 16 6 H 0.08 2.73 7.58 -2.39 -0.02 2.71 16 7 N -0.69 -22.41 4.26 -445.67 -1.90 -24.31 16 8 C 0.56 19.04 6.50 86.66 0.56 19.60 16 9 O -0.56 -22.71 16.77 -4.05 -0.07 -22.77 16 10 C -0.23 -6.07 5.64 -20.01 -0.11 -6.18 16 11 C 0.19 3.96 7.29 22.66 0.17 4.12 16 12 F -0.12 -2.58 16.83 44.97 0.76 -1.82 16 13 C -0.18 -2.50 9.99 22.32 0.22 -2.28 16 14 C 0.19 2.76 7.30 22.44 0.16 2.92 16 15 F -0.11 -1.50 17.26 44.97 0.78 -0.72 16 16 C -0.19 -3.32 9.99 22.32 0.22 -3.10 16 17 C 0.18 4.56 7.29 22.66 0.17 4.72 16 18 F -0.13 -4.08 16.83 44.97 0.76 -3.32 16 19 C -0.14 -5.73 5.75 30.53 0.18 -5.55 16 20 C 0.19 9.15 5.00 86.22 0.43 9.58 16 21 N -0.60 -28.22 2.99 -676.05 -2.02 -30.24 16 22 C -0.25 -12.84 8.57 84.03 0.72 -12.12 16 23 H 0.08 3.80 6.24 -2.91 -0.02 3.79 16 24 C -0.05 -2.81 4.93 84.86 0.42 -2.39 16 25 N -0.94 -55.08 11.24 21.65 0.24 -54.83 16 26 Si 0.96 44.49 29.58 68.60 2.03 46.51 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 30 H 0.05 1.70 7.44 -2.39 -0.02 1.69 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.52 7.63 -2.39 -0.02 1.51 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.41 12.49 6.85 -92.71 -0.64 11.85 16 36 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.04 2.51 6.15 -2.39 -0.01 2.49 16 41 H 0.00 -0.16 7.74 -2.39 -0.02 -0.18 16 42 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -67.77 355.73 5.15 -62.61 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.45 Total: 15.48 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 4.13 Total: 13.41 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -3.68 Total: -109.38 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 2.29 Total: -5.87 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.77 5.15 -62.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947672882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.600 kcal (2) G-P(sol) polarization free energy of solvation -67.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds