Wall clock time and date at job start Wed Apr 1 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70107 * 2 1 4 4 C 1.52761 * 109.50717 * 239.88551 * 2 1 3 5 5 C 1.53044 * 109.38009 * 185.70504 * 4 2 1 6 6 H 1.08992 * 109.46332 * 301.21695 * 5 4 2 7 7 N 1.46499 * 109.45710 * 181.25827 * 5 4 2 8 8 C 1.34781 * 119.99710 * 154.93133 * 7 5 4 9 9 O 1.21563 * 120.00261 * 0.02562 * 8 7 5 10 10 C 1.47737 * 119.99941 * 180.02562 * 8 7 5 11 11 C 1.39630 * 120.09715 * 359.72341 * 10 8 7 12 12 C 1.38080 * 119.89411 * 179.74673 * 11 10 8 13 13 F 1.35093 * 119.95138 * 180.27823 * 12 11 10 14 14 C 1.38782 * 120.10038 * 0.55202 * 12 11 10 15 15 F 1.35102 * 119.90213 * 179.71984 * 14 12 11 16 16 C 1.38786 * 120.20158 * 359.70368 * 14 12 11 17 17 F 1.35105 * 119.94843 * 179.97438 * 16 14 12 18 18 C 1.38069 * 120.10444 * 0.02562 * 16 14 12 19 19 C 1.53039 * 109.53878 * 61.24145 * 5 4 2 20 20 C 1.53191 * 109.31106 * 298.63355 * 19 5 4 21 21 N 1.46925 * 108.77889 * 54.63654 * 20 19 5 22 22 C 1.36931 * 120.63447 * 126.36404 * 21 20 19 23 23 H 1.07999 * 120.00105 * 210.77882 * 22 21 20 24 24 C 1.38813 * 119.99704 * 30.78148 * 22 21 20 25 25 N 1.31625 * 119.99807 * 197.75940 * 24 22 21 26 26 Si 1.86798 * 120.00409 * 17.75283 * 24 22 21 27 27 H 1.48510 * 109.46985 * 273.13325 * 26 24 22 28 28 H 1.48507 * 109.46757 * 33.12720 * 26 24 22 29 29 H 1.48497 * 109.47439 * 153.12953 * 26 24 22 30 30 H 1.09001 * 109.46910 * 299.63817 * 1 2 3 31 31 H 1.08996 * 109.47443 * 59.64036 * 1 2 3 32 32 H 1.09000 * 109.47078 * 179.64298 * 1 2 3 33 33 H 1.08998 * 109.56746 * 65.67053 * 4 2 1 34 34 H 1.09000 * 109.38632 * 305.63026 * 4 2 1 35 35 H 0.97003 * 120.00772 * 334.93472 * 7 5 4 36 36 H 1.07998 * 120.05814 * 0.02583 * 11 10 8 37 37 H 1.07999 * 120.05381 * 180.02562 * 18 16 14 38 38 H 1.08996 * 109.49972 * 178.68375 * 19 5 4 39 39 H 1.09000 * 109.52468 * 58.59743 * 19 5 4 40 40 H 1.09001 * 109.58789 * 294.84717 * 20 19 5 41 41 H 1.09003 * 109.58349 * 174.42097 * 20 19 5 42 42 H 0.96998 * 119.99952 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8461 -1.1727 6 1 4.0057 0.1475 -1.0996 7 7 4.0577 -1.5120 -2.3805 8 6 5.3217 -1.3001 -2.7978 9 8 6.0520 -0.5569 -2.1717 10 6 5.8196 -1.9712 -4.0162 11 6 4.9843 -2.8298 -4.7336 12 6 5.4524 -3.4508 -5.8747 13 9 4.6435 -4.2773 -6.5729 14 6 6.7544 -3.2314 -6.3022 15 9 7.2099 -3.8455 -7.4161 16 6 7.5898 -2.3830 -5.5893 17 9 8.8565 -2.1736 -6.0098 18 6 7.1287 -1.7534 -4.4502 19 6 3.9523 -1.6686 0.0580 20 6 3.4644 -0.9519 1.3210 21 7 2.0226 -0.6996 1.1945 22 6 1.1537 -1.1136 2.1685 23 1 0.1430 -1.3913 1.9080 24 6 1.5719 -1.1764 3.4906 25 7 0.8887 -1.8855 4.3640 26 14 3.1044 -0.2547 4.0303 27 1 4.2999 -1.1057 3.8020 28 1 3.2312 0.9984 3.2434 29 1 3.0005 0.0759 5.4743 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.7632 -0.1565 -2.1350 34 1 1.5963 -1.7168 -1.2943 35 1 3.4751 -2.1054 -2.8800 36 1 3.9724 -3.0046 -4.3993 37 1 7.7794 -1.0930 -3.8963 38 1 5.0363 -1.7761 0.0965 39 1 3.4909 -2.6543 -0.0021 40 1 3.9929 -0.0050 1.4310 41 1 3.6504 -1.5799 2.1923 42 1 1.1807 -1.9291 5.2879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947732338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:21 Heat of formation + Delta-G solvation = -135.183814 kcal Electronic energy + Delta-G solvation = -29583.576118 eV Core-core repulsion = 24921.226361 eV Total energy + Delta-G solvation = -4662.349757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.98134 -50.35205 -49.66218 -41.56012 -39.92837 -38.92136 -36.26963 -34.29570 -33.41392 -32.57453 -31.83835 -31.16617 -28.08881 -26.67598 -25.43529 -24.58260 -24.21278 -22.62878 -21.65052 -21.11893 -19.85879 -19.15323 -18.89180 -18.38727 -17.98768 -17.76186 -17.55352 -17.08648 -16.63882 -16.60127 -16.31960 -16.21886 -16.06448 -16.03606 -15.60707 -15.36273 -15.33840 -14.88470 -14.81812 -14.32811 -13.98819 -13.91783 -13.82089 -13.48045 -13.08016 -12.92974 -12.83267 -12.69810 -12.61749 -12.21223 -12.00534 -11.85087 -11.73031 -11.50971 -11.43706 -11.10901 -10.68985 -10.30690 -10.22538 -10.03764 -8.84740 -8.11092 -5.45146 -0.93270 -0.47735 1.28510 1.30662 1.42116 1.49256 1.80666 2.12874 2.25731 2.44724 2.86531 2.91669 3.10346 3.14478 3.23632 3.34921 3.64844 3.80977 3.95439 4.10846 4.17153 4.23292 4.27379 4.42611 4.48909 4.49911 4.60299 4.66068 4.72253 4.76146 4.87426 4.97334 5.04177 5.09153 5.11246 5.23563 5.26527 5.43295 5.51864 5.61532 5.96559 6.24387 6.42403 6.98000 7.06619 7.68797 8.09727 9.08426 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.002491 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.950511 B =11236.995524 C =11894.153225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.123 4.123 5 C 0.160 3.840 6 H 0.075 0.925 7 N -0.698 5.698 8 C 0.562 3.438 9 O -0.563 6.563 10 C -0.082 4.082 11 C -0.080 4.080 12 C 0.097 3.903 13 F -0.116 7.116 14 C 0.051 3.949 15 F -0.121 7.121 16 C 0.091 3.909 17 F -0.121 7.121 18 C -0.072 4.072 19 C -0.131 4.131 20 C 0.122 3.878 21 N -0.616 5.616 22 C -0.231 4.231 23 H 0.071 0.929 24 C -0.033 4.033 25 N -0.959 5.959 26 Si 0.935 3.065 27 H -0.277 1.277 28 H -0.268 1.268 29 H -0.316 1.316 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.051 0.949 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -1.478 -24.992 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.162 4.162 5 C 0.055 3.945 6 H 0.093 0.907 7 N -0.350 5.350 8 C 0.349 3.651 9 O -0.442 6.442 10 C -0.085 4.085 11 C -0.099 4.099 12 C 0.076 3.924 13 F -0.095 7.095 14 C 0.029 3.971 15 F -0.099 7.099 16 C 0.071 3.929 17 F -0.099 7.099 18 C -0.092 4.092 19 C -0.171 4.171 20 C -0.004 4.004 21 N -0.341 5.341 22 C -0.361 4.361 23 H 0.089 0.911 24 C -0.228 4.228 25 N -0.606 5.606 26 Si 0.765 3.235 27 H -0.204 1.204 28 H -0.193 1.193 29 H -0.245 1.245 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.255 0.745 36 H 0.207 0.793 37 H 0.186 0.814 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.536 -1.028 -24.500 26.310 hybrid contribution 0.782 -0.256 0.450 0.938 sum 10.318 -1.283 -24.050 26.201 Atomic orbital electron populations 1.21737 0.94214 1.01480 1.01287 1.20613 0.94541 0.93659 0.85420 0.94755 1.22161 0.92383 1.02704 0.98988 1.20775 0.95120 0.95853 0.82747 0.90694 1.45899 1.12776 1.48450 1.27848 1.18080 0.82202 0.80980 0.83874 1.90836 1.56938 1.38673 1.57768 1.19435 0.93964 0.99116 0.96032 1.21508 1.02582 0.94125 0.91673 1.17080 0.86593 0.95103 0.93580 1.91608 1.71192 1.68981 1.77678 1.17981 0.92990 0.98772 0.87322 1.91569 1.88944 1.80703 1.48713 1.17097 0.80450 0.99685 0.95683 1.91588 1.35425 1.93425 1.89490 1.21265 0.96049 0.98319 0.93528 1.22237 1.00101 0.99869 0.94939 1.21324 0.84697 0.97036 0.97310 1.44662 1.01997 1.66300 1.21154 1.18910 0.95948 1.35212 0.86057 0.91135 1.25886 1.00335 1.00235 0.96320 1.69915 1.43398 1.43269 1.04036 0.86136 0.81252 0.80602 0.75461 1.20407 1.19341 1.24491 0.94399 0.89900 0.93420 0.88161 0.90544 0.74474 0.79300 0.81444 0.92125 0.91302 0.95902 0.93103 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 2 C 0.16 5.40 3.48 44.83 0.16 5.56 16 3 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.12 -2.89 4.81 30.53 0.15 -2.74 16 5 C 0.16 4.00 2.42 45.02 0.11 4.11 16 6 H 0.07 2.15 7.57 -2.39 -0.02 2.14 16 7 N -0.70 -12.22 5.03 -445.39 -2.24 -14.46 16 8 C 0.56 11.33 7.73 86.75 0.67 12.00 16 9 O -0.56 -16.22 16.00 -3.91 -0.06 -16.28 16 10 C -0.08 -1.16 5.87 -20.09 -0.12 -1.28 16 11 C -0.08 -0.77 9.51 22.57 0.21 -0.55 16 12 C 0.10 1.23 7.29 22.36 0.16 1.39 16 13 F -0.12 -1.65 17.17 44.97 0.77 -0.88 16 14 C 0.05 0.78 7.32 22.53 0.16 0.95 16 15 F -0.12 -2.20 17.08 44.97 0.77 -1.43 16 16 C 0.09 1.41 7.29 22.36 0.16 1.57 16 17 F -0.12 -2.13 17.17 44.97 0.77 -1.36 16 18 C -0.07 -1.07 9.57 22.57 0.22 -0.86 16 19 C -0.13 -4.16 5.65 30.67 0.17 -3.99 16 20 C 0.12 5.01 4.20 86.36 0.36 5.37 16 21 N -0.62 -26.64 2.73 -676.02 -1.85 -28.49 16 22 C -0.23 -12.24 9.00 84.03 0.76 -11.48 16 23 H 0.07 3.97 6.44 -2.91 -0.02 3.96 16 24 C -0.03 -1.90 5.26 84.86 0.45 -1.46 16 25 N -0.96 -59.12 13.97 21.65 0.30 -58.81 16 26 Si 0.93 46.57 24.34 68.60 1.67 48.24 16 27 H -0.28 -13.19 6.42 99.48 0.64 -12.55 16 28 H -0.27 -13.00 6.90 99.48 0.69 -12.32 16 29 H -0.32 -16.17 7.11 99.48 0.71 -15.47 16 30 H 0.04 1.39 7.63 -2.39 -0.02 1.37 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.59 7.44 -2.39 -0.02 1.57 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 4.18 6.63 -92.71 -0.61 3.57 16 36 H 0.19 0.63 6.40 -2.91 -0.02 0.61 16 37 H 0.17 2.55 7.65 -2.91 -0.02 2.52 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.96 7.16 -2.39 -0.02 0.94 16 41 H 0.05 2.35 4.60 -2.39 -0.01 2.34 16 42 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.38 349.97 4.72 -64.66 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.39 Total: 3.73 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.20 Total: 5.07 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.78 Total: -101.76 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.06 Total: -16.28 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 2.31 Total: -3.67 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.67 Total: 48.24 kcal Total: -69.38 4.72 -64.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947732338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.526 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds