Wall clock time and date at job start Wed Apr 1 2020 00:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47439 * 2 1 4 4 N 1.35638 * 126.43766 * 265.02429 * 3 2 1 5 5 H 0.97004 * 124.93156 * 359.97438 * 4 3 2 6 6 N 1.28469 * 110.13513 * 179.97438 * 4 3 2 7 7 C 1.31822 * 110.13298 * 0.02562 * 6 4 3 8 8 C 1.47663 * 126.46224 * 179.97438 * 7 6 4 9 9 O 1.21574 * 120.00378 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99769 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00147 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47241 * 179.97438 * 11 10 8 13 13 H 1.09007 * 110.88415 * 305.70039 * 12 11 10 14 14 C 1.54909 * 111.00393 * 69.57556 * 12 11 10 15 15 N 1.47426 * 104.83165 * 155.08499 * 14 12 11 16 16 C 1.36938 * 125.65205 * 155.91259 * 15 14 12 17 17 H 1.08001 * 119.99451 * 353.93187 * 16 15 14 18 18 C 1.38808 * 120.00297 * 173.93923 * 16 15 14 19 19 N 1.31626 * 120.00052 * 6.84757 * 18 16 15 20 20 Si 1.86798 * 120.00175 * 186.84472 * 18 16 15 21 21 H 1.48492 * 109.47118 * 94.98256 * 20 18 16 22 22 H 1.48499 * 109.47258 * 214.98801 * 20 18 16 23 23 H 1.48505 * 109.46904 * 334.98579 * 20 18 16 24 24 C 1.47028 * 108.70117 * 335.87047 * 15 14 12 25 25 C 1.54368 * 107.29084 * 1.09560 * 24 15 14 26 26 H 1.09001 * 110.70401 * 263.79481 * 25 24 15 27 27 O 1.42897 * 110.75685 * 140.50067 * 25 24 15 28 28 C 1.35462 * 126.43168 * 84.71317 * 3 2 1 29 29 Cl 1.73601 * 127.24004 * 359.97438 * 28 3 2 30 30 H 1.08998 * 109.47474 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47010 * 59.99616 * 1 2 3 32 32 H 1.08999 * 109.47039 * 300.00243 * 1 2 3 33 33 H 1.09003 * 109.47010 * 120.00384 * 2 1 3 34 34 H 1.08999 * 109.47039 * 239.99757 * 2 1 3 35 35 H 0.96999 * 119.99971 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.46633 * 299.99827 * 11 10 8 37 37 H 1.09002 * 109.47128 * 59.99370 * 11 10 8 38 38 H 1.08999 * 110.37170 * 273.91888 * 14 12 11 39 39 H 1.09004 * 110.36452 * 36.25121 * 14 12 11 40 40 H 0.96999 * 119.99980 * 180.02562 * 19 18 16 41 41 H 1.09010 * 109.87987 * 120.47716 * 24 15 14 42 42 H 1.09000 * 109.88168 * 241.48489 * 24 15 14 43 43 H 0.96702 * 113.99893 * 66.48728 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3902 2.1488 -1.0871 5 1 2.3624 1.8299 -2.0028 6 7 2.7713 3.3219 -0.7279 7 6 2.6933 3.4429 0.5825 8 6 3.0428 4.6383 1.3757 9 8 2.9255 4.6206 2.5857 10 7 3.4919 5.7490 0.7584 11 6 3.8392 6.9349 1.5454 12 6 4.3183 8.0460 0.6091 13 1 5.1331 7.6958 -0.0247 14 6 3.1482 8.5959 -0.2443 15 7 3.5539 9.9674 -0.6019 16 6 3.1061 10.6755 -1.6851 17 1 2.4707 10.1985 -2.4167 18 6 3.4690 12.0059 -1.8429 19 7 4.3491 12.5491 -1.0287 20 14 2.7086 13.0255 -3.2109 21 1 1.5418 13.7749 -2.6797 22 1 3.7161 13.9834 -3.7331 23 1 2.2633 12.1287 -4.3077 24 6 4.5182 10.4495 0.3978 25 6 4.7394 9.3059 1.4108 26 1 4.1021 9.4372 2.2854 27 8 6.1141 9.2262 1.7925 28 6 2.2059 2.2127 1.0852 29 17 1.8979 1.8039 2.7441 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.5858 5.7630 -0.2070 36 1 2.9619 7.2757 2.0953 37 1 4.6339 6.6846 2.2482 38 1 3.0176 7.9927 -1.1427 39 1 2.2280 8.6127 0.3397 40 1 4.6024 13.4790 -1.1387 41 1 5.4612 10.7011 -0.0879 42 1 4.1178 11.3266 0.9063 43 1 6.4273 9.9898 2.2964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958151956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:37 Heat of formation + Delta-G solvation = -25.723358 kcal Electronic energy + Delta-G solvation = -27145.846560 eV Core-core repulsion = 23059.960006 eV Total energy + Delta-G solvation = -4085.886553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -43.87447 -40.70359 -39.66479 -37.54533 -36.64080 -36.09202 -35.26940 -34.04268 -32.95463 -31.40449 -30.32474 -29.30497 -27.40853 -25.90483 -24.80259 -24.10138 -22.25597 -22.20393 -21.58434 -20.89609 -18.96884 -18.94584 -18.35181 -17.92164 -17.18264 -17.11230 -16.69279 -16.18894 -15.92292 -15.73520 -15.68733 -15.29747 -14.92064 -14.64288 -14.47197 -14.38011 -14.00982 -13.68186 -13.45438 -13.23520 -13.10358 -13.06977 -12.90441 -12.74667 -12.44376 -12.28446 -12.26536 -12.01151 -11.92387 -11.78945 -11.74637 -11.48615 -11.12924 -10.81258 -10.71170 -10.57802 -10.09909 -9.84826 -8.93243 -7.87948 -5.23413 0.32814 0.74074 1.02255 1.45889 1.47884 1.56575 1.81248 2.15985 2.21101 2.47627 3.21246 3.29326 3.35490 3.48754 3.57088 3.69408 3.80982 3.89472 4.12234 4.15510 4.36034 4.40889 4.41499 4.46138 4.57271 4.63685 4.75382 4.84473 4.89028 4.95558 5.05176 5.12564 5.24613 5.36237 5.38359 5.43710 5.47863 5.70315 5.88913 6.16179 6.36602 6.65526 6.90189 7.06602 7.08873 7.73206 8.37423 9.22761 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016509 B = 0.002382 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.676802 B =11750.254881 C =12974.177251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.056 3.944 4 N -0.352 5.352 5 H 0.470 0.530 6 N -0.247 5.247 7 C -0.020 4.020 8 C 0.595 3.405 9 O -0.550 6.550 10 N -0.704 5.704 11 C 0.147 3.853 12 C -0.090 4.090 13 H 0.085 0.915 14 C 0.140 3.860 15 N -0.625 5.625 16 C -0.243 4.243 17 H 0.086 0.914 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.160 3.840 25 C 0.098 3.902 26 H 0.078 0.922 27 O -0.569 6.569 28 C -0.128 4.128 29 Cl -0.016 7.016 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.247 0.753 41 H 0.016 0.984 42 H 0.018 0.982 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -28.037 1.601 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.072 4.072 4 N -0.070 5.070 5 H 0.321 0.679 6 N -0.084 5.084 7 C -0.181 4.181 8 C 0.380 3.620 9 O -0.427 6.427 10 N -0.356 5.356 11 C 0.024 3.976 12 C -0.109 4.109 13 H 0.103 0.897 14 C 0.015 3.985 15 N -0.352 5.352 16 C -0.372 4.372 17 H 0.103 0.897 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.035 3.965 25 C 0.038 3.962 26 H 0.096 0.904 27 O -0.376 6.376 28 C -0.166 4.166 29 Cl 0.013 6.987 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.936 -27.812 1.277 28.276 hybrid contribution -0.276 1.309 -0.368 1.387 sum -5.212 -26.504 0.909 27.027 Atomic orbital electron populations 1.21777 0.93195 1.03617 1.02139 1.20393 0.96954 0.85655 1.06312 1.21644 1.02675 0.97710 0.85188 1.43338 1.45634 1.07312 1.10744 0.67942 1.73623 1.17784 1.04000 1.13000 1.21691 1.09785 0.96203 0.90411 1.17027 0.77113 0.81632 0.86271 1.90810 1.54643 1.83232 1.13967 1.45781 1.65625 1.12388 1.11770 1.21192 1.00418 0.82987 0.93030 1.22402 0.98323 0.93470 0.96731 0.89672 1.21763 0.94616 0.85326 0.96777 1.44617 1.49948 1.13070 1.27568 1.19478 1.24965 0.92802 0.99956 0.89661 1.25690 1.00068 0.98153 1.01995 1.70174 1.35429 1.12849 1.41410 0.85054 0.77213 0.78437 0.78607 1.21440 1.22209 1.19059 1.21621 0.92432 0.93320 0.89167 1.22880 0.82973 0.94482 0.95910 0.90443 1.86392 1.25849 1.48127 1.77234 1.20690 1.12464 0.94737 0.88665 1.98349 1.94348 1.92829 1.13207 0.89514 0.92219 0.93533 0.88356 0.86708 0.75069 0.91053 0.90724 0.92905 0.95164 0.94332 0.96621 0.96431 0.75705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 71.98 0.71 -0.26 16 2 C -0.05 -0.34 6.36 29.85 0.19 -0.15 16 3 C 0.06 0.78 6.51 41.33 0.27 1.04 16 4 N -0.35 -4.46 6.86 -47.55 -0.33 -4.79 16 5 H 0.47 1.88 8.96 -219.99 -1.97 -0.09 16 6 N -0.25 -5.17 11.91 -48.17 -0.57 -5.74 16 7 C -0.02 -0.52 7.13 42.45 0.30 -0.21 16 8 C 0.60 18.11 7.82 86.73 0.68 18.79 16 9 O -0.55 -19.63 15.87 -3.95 -0.06 -19.70 16 10 N -0.70 -19.88 5.45 -466.13 -2.54 -22.42 16 11 C 0.15 4.42 5.12 86.38 0.44 4.87 16 12 C -0.09 -3.08 2.79 -9.40 -0.03 -3.11 16 13 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 14 C 0.14 5.58 6.56 86.85 0.57 6.15 16 15 N -0.62 -31.96 3.39 -691.87 -2.35 -34.31 16 16 C -0.24 -13.58 10.26 84.03 0.86 -12.71 16 17 H 0.09 4.52 7.84 -2.91 -0.02 4.50 16 18 C -0.07 -3.75 5.48 84.86 0.47 -3.29 16 19 N -0.95 -57.03 10.36 21.65 0.22 -56.80 16 20 Si 0.98 45.62 29.56 68.60 2.03 47.64 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.16 7.88 5.16 86.74 0.45 8.32 16 25 C 0.10 3.64 3.80 31.80 0.12 3.76 16 26 H 0.08 2.61 8.04 -2.39 -0.02 2.60 16 27 O -0.57 -19.42 13.39 -148.98 -1.99 -21.41 16 28 C -0.13 -2.84 6.79 22.44 0.15 -2.69 16 29 Cl -0.02 -0.37 28.02 -2.72 -0.08 -0.44 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.41 10.72 8.15 -92.71 -0.76 9.96 16 36 H 0.07 2.18 8.04 -2.38 -0.02 2.16 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.03 1.20 7.96 -2.39 -0.02 1.18 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.02 0.87 7.46 -2.38 -0.02 0.86 16 42 H 0.02 0.96 7.36 -2.39 -0.02 0.94 16 43 H 0.39 10.36 9.12 -74.06 -0.68 9.68 16 Total: -1.00 -76.89 376.18 -2.81 -79.70 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -2.32 Total: 17.76 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 5.19 Total: 20.52 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -5.56 Total: -124.07 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -2.06 Total: -41.11 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.44 kcal Total: -76.89 -2.81 -79.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958151956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.976 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds