Wall clock time and date at job start Wed Apr 1 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45230 * 2 1 4 4 C 1.53041 * 109.48615 * 119.94982 * 2 1 3 5 5 C 1.53193 * 109.34006 * 181.35631 * 4 2 1 6 6 N 1.46929 * 108.77326 * 305.38036 * 5 4 2 7 7 C 1.36939 * 120.63411 * 233.62949 * 6 5 4 8 8 H 1.08001 * 119.99489 * 27.66221 * 7 6 5 9 9 C 1.38803 * 120.00513 * 207.67123 * 7 6 5 10 10 N 1.31619 * 120.00080 * 17.35333 * 9 7 6 11 11 Si 1.86797 * 120.00079 * 197.35962 * 9 7 6 12 12 H 1.48506 * 109.47348 * 59.99578 * 11 9 7 13 13 H 1.48498 * 109.47512 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47373 * 299.99844 * 11 9 7 15 15 C 1.46929 * 118.74162 * 53.61196 * 6 5 4 16 16 C 1.53045 * 109.46463 * 240.03815 * 2 1 3 17 17 H 1.09001 * 109.49503 * 58.65590 * 16 2 1 18 18 N 1.46505 * 109.49329 * 298.59866 * 16 2 1 19 19 C 1.34773 * 119.99795 * 155.06122 * 18 16 2 20 20 O 1.21577 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.47581 * 119.99819 * 179.97438 * 19 18 16 22 22 C 1.39735 * 120.13218 * 0.02562 * 21 19 18 23 23 C 1.37752 * 119.94610 * 179.97438 * 22 21 19 24 24 C 1.38713 * 120.21142 * 0.02562 * 23 22 21 25 25 F 1.35104 * 119.86683 * 179.97438 * 24 23 22 26 26 C 1.38656 * 120.26943 * 359.95622 * 24 23 22 27 27 F 1.35106 * 119.97691 * 180.02562 * 26 24 23 28 28 C 1.38384 * 120.05180 * 359.78413 * 26 24 23 29 29 F 1.35103 * 120.10786 * 180.25106 * 28 26 24 30 30 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47493 * 299.96600 * 1 2 3 32 32 H 1.09002 * 109.47079 * 59.96840 * 1 2 3 33 33 H 1.08996 * 109.46886 * 61.40216 * 4 2 1 34 34 H 1.08999 * 109.52286 * 301.33565 * 4 2 1 35 35 H 1.09000 * 109.59011 * 185.59714 * 5 4 2 36 36 H 1.09001 * 109.59102 * 65.16263 * 5 4 2 37 37 H 0.97006 * 120.00073 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.58568 * 186.60634 * 15 6 5 39 39 H 1.08996 * 109.58603 * 66.17544 * 15 6 5 40 40 H 0.96999 * 119.99960 * 335.06472 * 18 16 2 41 41 H 1.08004 * 120.02820 * 359.95982 * 22 21 19 42 42 H 1.08005 * 119.89391 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0405 -0.7203 1.2501 5 6 3.5720 -0.6888 1.2639 6 7 4.0679 -1.2495 -0.0004 7 6 4.9754 -2.2750 -0.0006 8 1 5.0081 -2.9671 0.8279 9 6 5.8532 -2.4250 -1.0652 10 7 6.0598 -1.4235 -1.8940 11 14 6.7414 -4.0481 -1.3220 12 1 5.7453 -5.1311 -1.5230 13 1 7.6144 -3.9507 -2.5193 14 1 7.5701 -4.3533 -0.1281 15 6 3.5714 -0.6892 -1.2647 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2206 -2.1399 18 7 1.5795 -2.1114 -1.2347 19 6 1.4522 -2.7919 -2.3911 20 8 1.7199 -2.2519 -3.4469 21 6 0.9890 -4.1930 -2.3755 22 6 0.6811 -4.8166 -1.1635 23 6 0.2486 -6.1245 -1.1535 24 6 0.1179 -6.8255 -2.3433 25 9 -0.3065 -8.1081 -2.3253 26 6 0.4206 -6.2153 -3.5510 27 9 0.2906 -6.9035 -4.7063 28 6 0.8509 -4.9003 -3.5743 29 9 1.1413 -4.3030 -4.7508 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6979 -1.7550 1.2386 34 1 1.6583 -0.2204 2.1401 35 1 3.9423 -1.2848 2.0980 36 1 3.9155 0.3406 1.3667 37 1 6.6730 -1.5284 -2.6382 38 1 3.9413 -1.2855 -2.0988 39 1 3.9148 0.3401 -1.3680 40 1 1.3663 -2.5424 -0.3923 41 1 0.7825 -4.2738 -0.2353 42 1 0.0105 -6.6055 -0.2163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968075084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:31 Heat of formation + Delta-G solvation = -118.253931 kcal Electronic energy + Delta-G solvation = -31215.180648 eV Core-core repulsion = 26553.565025 eV Total energy + Delta-G solvation = -4661.615622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.90087 -49.26720 -48.52288 -40.12837 -38.63123 -37.34572 -34.23389 -33.04221 -31.26935 -30.93876 -30.82331 -29.03163 -27.36593 -24.60251 -23.98941 -23.40933 -22.29557 -21.16878 -20.90402 -18.91622 -18.67720 -18.12296 -17.90302 -16.93194 -16.74538 -16.65447 -15.94592 -15.60290 -15.20871 -15.07513 -14.94198 -14.72638 -14.58257 -14.37079 -14.11273 -13.88420 -13.75348 -13.36223 -13.24671 -13.04845 -12.66264 -12.30396 -12.12111 -12.03375 -11.97672 -11.64783 -11.45528 -11.16664 -10.95732 -10.74780 -10.57908 -10.28922 -9.98333 -9.79936 -9.61991 -9.52118 -9.18799 -9.14606 -8.50606 -8.47273 -6.69890 -5.80497 -3.23592 0.18729 0.51326 2.53624 3.02552 3.35760 3.38088 3.42271 3.44596 3.60502 3.93161 4.00265 4.17471 4.38791 4.47063 4.58590 5.08860 5.15789 5.17288 5.27501 5.34311 5.38499 5.48319 5.50116 5.53954 5.62570 5.79740 5.85538 5.92982 6.07960 6.21207 6.28035 6.30565 6.36980 6.46128 6.56486 6.68315 6.79677 6.90023 7.28841 7.61632 7.76224 7.89721 8.42609 8.56115 9.17613 9.81899 10.37169 11.27389 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.004769 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.025209 B = 5870.124997 C = 7079.515086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.257 4.257 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.159 3.841 16 C 0.126 3.874 17 H 0.079 0.921 18 N -0.687 5.687 19 C 0.555 3.445 20 O -0.523 6.523 21 C -0.141 4.141 22 C -0.036 4.036 23 C -0.142 4.142 24 C 0.115 3.885 25 F -0.118 7.118 26 C 0.020 3.980 27 F -0.116 7.116 28 C 0.156 3.844 29 F -0.093 7.093 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.394 0.606 41 H 0.155 0.845 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -5.169 4.619 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.032 3.968 16 C 0.020 3.980 17 H 0.097 0.903 18 N -0.337 5.337 19 C 0.340 3.660 20 O -0.400 6.400 21 C -0.146 4.146 22 C -0.055 4.055 23 C -0.161 4.161 24 C 0.095 3.905 25 F -0.096 7.096 26 C -0.001 4.001 27 F -0.094 7.094 28 C 0.134 3.866 29 F -0.070 7.070 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.230 0.770 41 H 0.173 0.827 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.971 -4.782 3.627 16.129 hybrid contribution 0.487 -1.415 -0.240 1.516 sum -14.483 -6.197 3.387 16.113 Atomic orbital electron populations 1.21856 0.95914 1.01325 1.01128 1.21326 0.94634 1.00039 0.95350 0.90212 1.22085 0.99319 0.99242 0.96155 1.20941 0.90628 0.96630 0.90299 1.43984 1.48353 1.39529 0.99103 1.19016 1.10286 1.03171 1.06200 0.91844 1.24999 0.97125 0.97130 0.99839 1.69979 1.37328 1.28993 1.17638 0.86486 0.79431 0.84143 0.77412 1.21096 1.21569 1.20879 1.21222 0.86474 0.97986 0.91089 1.21884 0.99130 0.79739 0.97215 0.90278 1.45690 1.66198 1.14283 1.07570 1.17543 0.78964 0.84482 0.84995 1.90854 1.49736 1.68963 1.30416 1.20272 1.05297 0.97014 0.91985 1.21176 0.93238 0.93674 0.97381 1.21054 1.03029 0.94904 0.97139 1.17532 1.00212 0.80211 0.92577 1.91570 1.86917 1.33999 1.97134 1.17421 1.09921 0.90384 0.82381 1.91568 1.93905 1.78357 1.45608 1.17335 0.97926 0.88703 0.82666 1.91669 1.89616 1.82643 1.43107 0.93115 0.93045 0.92998 0.92901 0.92648 0.92760 0.96376 0.93442 0.88385 0.95474 0.76974 0.82750 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.05 37.16 0.34 -1.31 16 2 C -0.09 -1.33 2.48 -90.58 -0.22 -1.56 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.13 -1.81 5.20 -26.61 -0.14 -1.94 16 5 C 0.14 2.61 6.52 -3.71 -0.02 2.59 16 6 N -0.59 -13.40 2.91 -172.32 -0.50 -13.91 16 7 C -0.26 -6.65 9.58 -15.06 -0.14 -6.79 16 8 H 0.06 1.60 7.89 -52.49 -0.41 1.19 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 11 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.16 3.62 4.91 -3.71 -0.02 3.61 16 16 C 0.13 2.22 2.24 -67.81 -0.15 2.06 16 17 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 18 N -0.69 -11.10 4.20 -54.71 -0.23 -11.33 16 19 C 0.56 10.03 7.73 -12.45 -0.10 9.93 16 20 O -0.52 -11.56 15.00 5.30 0.08 -11.48 16 21 C -0.14 -2.09 5.88 -104.92 -0.62 -2.71 16 22 C -0.04 -0.38 9.53 -39.20 -0.37 -0.75 16 23 C -0.14 -1.31 10.00 -39.58 -0.40 -1.71 16 24 C 0.12 1.32 7.31 -39.25 -0.29 1.03 16 25 F -0.12 -1.35 17.17 2.25 0.04 -1.31 16 26 C 0.02 0.28 7.30 -39.37 -0.29 -0.01 16 27 F -0.12 -1.68 17.09 2.25 0.04 -1.64 16 28 C 0.16 2.43 7.29 -38.92 -0.28 2.14 16 29 F -0.09 -1.69 15.46 2.25 0.03 -1.65 16 30 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.70 6.40 -51.93 -0.33 0.37 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.99 7.93 -51.93 -0.41 0.57 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.10 2.68 6.03 -51.93 -0.31 2.36 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 5.34 4.67 -40.82 -0.19 5.15 16 41 H 0.15 1.25 6.40 -52.48 -0.34 0.92 16 42 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -31.54 353.52 -7.29 -38.83 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.88 Total: 1.08 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.79 Total: 4.74 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.11 Total: -50.61 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.11 Total: -4.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.54 -7.29 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968075084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.419 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds