Wall clock time and date at job start Wed Apr 1 2020 02:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45230 * 2 1 4 4 C 1.53041 * 109.48615 * 119.94982 * 2 1 3 5 5 C 1.53193 * 109.34006 * 181.35631 * 4 2 1 6 6 N 1.46929 * 108.77326 * 305.38036 * 5 4 2 7 7 C 1.36939 * 120.63411 * 233.62949 * 6 5 4 8 8 H 1.08001 * 119.99489 * 27.66221 * 7 6 5 9 9 C 1.38803 * 120.00513 * 207.67123 * 7 6 5 10 10 N 1.31619 * 120.00080 * 17.35333 * 9 7 6 11 11 Si 1.86797 * 120.00079 * 197.35962 * 9 7 6 12 12 H 1.48506 * 109.47348 * 59.99578 * 11 9 7 13 13 H 1.48498 * 109.47512 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47373 * 299.99844 * 11 9 7 15 15 C 1.46929 * 118.74162 * 53.61196 * 6 5 4 16 16 C 1.53045 * 109.46463 * 240.03815 * 2 1 3 17 17 H 1.09001 * 109.49503 * 58.65590 * 16 2 1 18 18 N 1.46505 * 109.49329 * 298.59866 * 16 2 1 19 19 C 1.34773 * 119.99795 * 155.06122 * 18 16 2 20 20 O 1.21577 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.47581 * 119.99819 * 179.97438 * 19 18 16 22 22 C 1.39735 * 120.13218 * 0.02562 * 21 19 18 23 23 C 1.37752 * 119.94610 * 179.97438 * 22 21 19 24 24 C 1.38713 * 120.21142 * 0.02562 * 23 22 21 25 25 F 1.35104 * 119.86683 * 179.97438 * 24 23 22 26 26 C 1.38656 * 120.26943 * 359.95622 * 24 23 22 27 27 F 1.35106 * 119.97691 * 180.02562 * 26 24 23 28 28 C 1.38384 * 120.05180 * 359.78413 * 26 24 23 29 29 F 1.35103 * 120.10786 * 180.25106 * 28 26 24 30 30 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47493 * 299.96600 * 1 2 3 32 32 H 1.09002 * 109.47079 * 59.96840 * 1 2 3 33 33 H 1.08996 * 109.46886 * 61.40216 * 4 2 1 34 34 H 1.08999 * 109.52286 * 301.33565 * 4 2 1 35 35 H 1.09000 * 109.59011 * 185.59714 * 5 4 2 36 36 H 1.09001 * 109.59102 * 65.16263 * 5 4 2 37 37 H 0.97006 * 120.00073 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.58568 * 186.60634 * 15 6 5 39 39 H 1.08996 * 109.58603 * 66.17544 * 15 6 5 40 40 H 0.96999 * 119.99960 * 335.06472 * 18 16 2 41 41 H 1.08004 * 120.02820 * 359.95982 * 22 21 19 42 42 H 1.08005 * 119.89391 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0405 -0.7203 1.2501 5 6 3.5720 -0.6888 1.2639 6 7 4.0679 -1.2495 -0.0004 7 6 4.9754 -2.2750 -0.0006 8 1 5.0081 -2.9671 0.8279 9 6 5.8532 -2.4250 -1.0652 10 7 6.0598 -1.4235 -1.8940 11 14 6.7414 -4.0481 -1.3220 12 1 5.7453 -5.1311 -1.5230 13 1 7.6144 -3.9507 -2.5193 14 1 7.5701 -4.3533 -0.1281 15 6 3.5714 -0.6892 -1.2647 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2206 -2.1399 18 7 1.5795 -2.1114 -1.2347 19 6 1.4522 -2.7919 -2.3911 20 8 1.7199 -2.2519 -3.4469 21 6 0.9890 -4.1930 -2.3755 22 6 0.6811 -4.8166 -1.1635 23 6 0.2486 -6.1245 -1.1535 24 6 0.1179 -6.8255 -2.3433 25 9 -0.3065 -8.1081 -2.3253 26 6 0.4206 -6.2153 -3.5510 27 9 0.2906 -6.9035 -4.7063 28 6 0.8509 -4.9003 -3.5743 29 9 1.1413 -4.3030 -4.7508 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6979 -1.7550 1.2386 34 1 1.6583 -0.2204 2.1401 35 1 3.9423 -1.2848 2.0980 36 1 3.9155 0.3406 1.3667 37 1 6.6730 -1.5284 -2.6382 38 1 3.9413 -1.2855 -2.0988 39 1 3.9148 0.3401 -1.3680 40 1 1.3663 -2.5424 -0.3923 41 1 0.7825 -4.2738 -0.2353 42 1 0.0105 -6.6055 -0.2163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968075084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:30 Heat of formation + Delta-G solvation = -137.498955 kcal Electronic energy + Delta-G solvation = -31216.015174 eV Core-core repulsion = 26553.565025 eV Total energy + Delta-G solvation = -4662.450149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -50.95588 -50.35090 -49.63872 -41.45044 -39.81291 -38.73564 -35.94001 -34.46881 -32.86628 -32.22286 -31.80773 -30.45697 -28.86956 -26.03331 -25.39129 -24.41641 -23.70271 -22.72572 -22.13246 -20.35371 -19.82385 -19.22415 -19.00603 -18.54364 -18.00068 -17.80632 -17.07347 -16.85360 -16.69916 -16.50099 -16.16887 -15.90867 -15.73521 -15.68509 -15.58819 -15.38782 -14.96796 -14.75973 -14.60799 -14.28330 -14.06812 -13.56485 -13.39883 -13.12040 -13.03463 -13.01616 -12.96771 -12.67300 -12.57724 -12.45141 -12.25508 -11.92480 -11.51384 -11.30533 -11.05287 -11.02600 -10.51305 -10.25827 -10.17397 -9.92529 -8.62545 -7.84578 -5.28374 -0.83675 -0.46488 1.40953 1.44282 1.46408 1.49615 1.91316 2.22529 2.35681 2.49896 2.93751 2.97293 3.26300 3.31816 3.35906 3.57820 3.71849 3.91067 4.03957 4.16822 4.19783 4.34686 4.55629 4.61744 4.63736 4.72099 4.74714 4.76841 4.86456 4.93877 5.02196 5.13908 5.23729 5.30487 5.31014 5.35153 5.52088 5.55536 5.62796 5.70437 5.74950 6.41070 6.56259 7.16624 7.23575 7.90992 8.41378 9.20336 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.004769 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.025209 B = 5870.124997 C = 7079.515086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.243 4.243 8 H 0.078 0.922 9 C -0.053 4.053 10 N -0.936 5.936 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.309 1.309 14 H -0.267 1.267 15 C 0.169 3.831 16 C 0.137 3.863 17 H 0.063 0.937 18 N -0.672 5.672 19 C 0.549 3.451 20 O -0.577 6.577 21 C -0.160 4.160 22 C -0.017 4.017 23 C -0.111 4.111 24 C 0.126 3.874 25 F -0.114 7.114 26 C 0.008 3.992 27 F -0.127 7.127 28 C 0.124 3.876 29 F -0.122 7.122 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.009 0.991 37 H 0.242 0.758 38 H 0.047 0.953 39 H -0.005 1.005 40 H 0.410 0.590 41 H 0.190 0.810 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 -6.997 9.023 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.154 4.154 5 C 0.009 3.991 6 N -0.322 5.322 7 C -0.374 4.374 8 H 0.095 0.905 9 C -0.248 4.248 10 N -0.583 5.583 11 Si 0.777 3.223 12 H -0.205 1.205 13 H -0.236 1.236 14 H -0.192 1.192 15 C 0.042 3.958 16 C 0.031 3.969 17 H 0.081 0.919 18 N -0.323 5.323 19 C 0.336 3.664 20 O -0.458 6.458 21 C -0.164 4.164 22 C -0.036 4.036 23 C -0.129 4.129 24 C 0.105 3.895 25 F -0.092 7.092 26 C -0.014 4.014 27 F -0.106 7.106 28 C 0.103 3.897 29 F -0.100 7.100 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.250 0.750 41 H 0.207 0.793 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.691 -6.634 8.116 20.563 hybrid contribution 1.308 -0.847 -1.526 2.181 sum -16.382 -7.481 6.590 19.177 Atomic orbital electron populations 1.21781 0.92826 1.02550 1.02217 1.21285 0.97011 0.99110 0.93238 0.90756 1.21975 0.95296 1.00860 0.97291 1.21187 0.93962 0.95838 0.88097 1.44196 1.48100 1.39356 1.00586 1.19437 1.09049 1.03426 1.05456 0.90472 1.25691 0.98966 0.99514 1.00614 1.70165 1.38813 1.30906 1.18386 0.85628 0.78466 0.81294 0.76919 1.20538 1.23583 1.19239 1.20877 0.90090 0.95030 0.89835 1.21536 0.95180 0.81160 0.99024 0.91871 1.45499 1.65289 1.13618 1.07920 1.18118 0.78019 0.85767 0.84537 1.90826 1.52078 1.70491 1.32415 1.20133 1.07412 0.95400 0.93488 1.21567 0.91177 0.94226 0.96622 1.21556 0.99734 0.93691 0.97889 1.17699 0.99208 0.80288 0.92326 1.91592 1.86716 1.33803 1.97077 1.17585 1.10810 0.89877 0.83086 1.91532 1.94094 1.78390 1.46537 1.17694 0.99992 0.89799 0.82242 1.91584 1.90299 1.83324 1.44787 0.91813 0.90427 0.93536 0.91069 0.88866 0.92010 0.97281 0.94860 0.93465 0.98656 0.75015 0.79280 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.05 71.98 0.65 -1.87 16 2 C -0.09 -2.23 2.48 -10.77 -0.03 -2.26 16 3 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 4 C -0.12 -2.71 5.20 30.67 0.16 -2.55 16 5 C 0.13 4.62 6.52 86.36 0.56 5.19 16 6 N -0.60 -27.21 2.91 -699.09 -2.04 -29.24 16 7 C -0.24 -12.45 9.58 84.03 0.81 -11.65 16 8 H 0.08 3.70 7.89 -2.91 -0.02 3.68 16 9 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 10 N -0.94 -57.38 11.19 21.65 0.24 -57.14 16 11 Si 0.95 45.45 29.59 68.60 2.03 47.48 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.17 8.04 4.91 86.36 0.42 8.46 16 16 C 0.14 4.85 2.24 45.07 0.10 4.95 16 17 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 18 N -0.67 -20.86 4.20 -445.28 -1.87 -22.73 16 19 C 0.55 20.10 7.73 86.71 0.67 20.77 16 20 O -0.58 -27.31 15.00 -3.96 -0.06 -27.37 16 21 C -0.16 -4.59 5.88 -20.06 -0.12 -4.71 16 22 C -0.02 -0.29 9.53 22.52 0.21 -0.08 16 23 C -0.11 -1.42 10.00 22.27 0.22 -1.20 16 24 C 0.13 2.47 7.31 22.48 0.16 2.63 16 25 F -0.11 -2.20 17.17 44.97 0.77 -1.43 16 26 C 0.01 0.20 7.30 22.40 0.16 0.37 16 27 F -0.13 -3.74 17.09 44.97 0.77 -2.98 16 28 C 0.12 3.98 7.29 22.70 0.17 4.14 16 29 F -0.12 -4.82 15.46 44.97 0.70 -4.12 16 30 H 0.06 1.03 7.54 -2.39 -0.02 1.01 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.45 6.40 -2.39 -0.02 1.43 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 38 H 0.05 2.75 6.03 -2.39 -0.01 2.74 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.41 9.54 4.67 -92.71 -0.43 9.11 16 41 H 0.19 1.84 6.40 -2.91 -0.02 1.82 16 42 H 0.21 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -77.39 353.52 5.77 -71.62 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.65 Total: 6.23 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 4.58 Total: 19.67 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -3.67 Total: -109.11 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.06 Total: -27.37 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.24 Total: -8.53 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.39 5.77 -71.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968075084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.875 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds