Wall clock time and date at job start Wed Apr 1 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46436 * 2 1 4 4 C 1.53035 * 109.46148 * 119.96136 * 2 1 3 5 5 C 1.53193 * 109.31593 * 181.38161 * 4 2 1 6 6 N 1.46924 * 108.77425 * 305.36896 * 5 4 2 7 7 C 1.36943 * 120.62746 * 233.62752 * 6 5 4 8 8 H 1.07996 * 120.00407 * 27.83790 * 7 6 5 9 9 C 1.38816 * 119.99682 * 207.83971 * 7 6 5 10 10 N 1.31618 * 120.00302 * 17.13812 * 9 7 6 11 11 Si 1.86804 * 119.99860 * 197.13324 * 9 7 6 12 12 H 1.48502 * 109.47075 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47121 * 119.99996 * 11 9 7 14 14 H 1.48499 * 109.47214 * 240.00130 * 11 9 7 15 15 C 1.46928 * 118.74199 * 53.60205 * 6 5 4 16 16 C 1.53045 * 109.45727 * 240.02935 * 2 1 3 17 17 H 1.08997 * 109.49494 * 58.66140 * 16 2 1 18 18 N 1.46505 * 109.49606 * 298.59981 * 16 2 1 19 19 C 1.34777 * 119.99981 * 155.00153 * 18 16 2 20 20 O 1.21584 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.47548 * 119.99983 * 179.97438 * 19 18 16 22 22 C 1.39929 * 120.17523 * 270.00019 * 21 19 18 23 23 F 1.35101 * 120.07465 * 0.02562 * 22 21 19 24 24 C 1.38167 * 119.84901 * 180.02562 * 22 21 19 25 25 C 1.38335 * 120.21867 * 0.02562 * 24 22 21 26 26 C 1.38445 * 120.35579 * 359.97438 * 25 24 22 27 27 F 1.35103 * 119.92898 * 179.97438 * 26 25 24 28 28 C 1.38445 * 120.14331 * 359.72189 * 26 25 24 29 29 F 1.35097 * 120.10936 * 180.27928 * 28 26 25 30 30 H 1.08997 * 109.47297 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47094 * 59.96967 * 1 2 3 32 32 H 1.09000 * 109.46602 * 299.97064 * 1 2 3 33 33 H 1.09002 * 109.49982 * 301.33719 * 4 2 1 34 34 H 1.09000 * 109.49776 * 61.43056 * 4 2 1 35 35 H 1.09000 * 109.58954 * 185.57995 * 5 4 2 36 36 H 1.09002 * 109.70108 * 65.22186 * 5 4 2 37 37 H 0.97003 * 120.00335 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.58837 * 186.60299 * 15 6 5 39 39 H 1.09002 * 109.58086 * 66.18368 * 15 6 5 40 40 H 0.97005 * 119.99774 * 334.99568 * 18 16 2 41 41 H 1.08007 * 119.89554 * 180.02562 * 24 22 21 42 42 H 1.07999 * 119.82799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9757 -2.2741 0.0001 8 1 5.0067 -2.9680 0.8271 9 6 5.8563 -2.4214 -1.0629 10 7 6.0612 -1.4196 -1.8915 11 14 6.7506 -4.0416 -1.3172 12 1 6.3485 -5.0007 -0.2570 13 1 6.3972 -4.5986 -2.6477 14 1 8.2164 -3.8139 -1.2493 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6571 -0.2209 -2.1398 18 7 1.5794 -2.1116 -1.2345 19 6 1.4507 -2.7919 -2.3909 20 8 1.7164 -2.2513 -3.4470 21 6 0.9875 -4.1927 -2.3751 22 6 1.9120 -5.2381 -2.2728 23 9 3.2330 -4.9678 -2.1875 24 6 1.4709 -6.5473 -2.2592 25 6 0.1190 -6.8275 -2.3469 26 6 -0.8033 -5.8000 -2.4484 27 9 -2.1215 -6.0835 -2.5341 28 6 -0.3781 -4.4825 -2.4571 29 9 -1.2791 -3.4802 -2.5505 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3632 0.5134 0.8903 33 1 1.6573 -0.2205 2.1398 34 1 1.6978 -1.7555 1.2384 35 1 3.9417 -1.2844 2.0984 36 1 3.9165 0.3402 1.3684 37 1 6.6762 -1.5226 -2.6345 38 1 3.9416 -1.2847 -2.0984 39 1 3.9143 0.3407 -1.3675 40 1 1.3671 -2.5428 -0.3919 41 1 2.1838 -7.3548 -2.1799 42 1 -0.2189 -7.8532 -2.3353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968103457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:46 Heat of formation + Delta-G solvation = -119.072353 kcal Electronic energy + Delta-G solvation = -31808.551411 eV Core-core repulsion = 27146.900300 eV Total energy + Delta-G solvation = -4661.651112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.73826 -48.95170 -48.80542 -39.92835 -38.63068 -37.38478 -34.16426 -32.93113 -31.60098 -30.98676 -30.23794 -29.10162 -27.33263 -24.82039 -23.97324 -23.09730 -22.27598 -21.12005 -20.89477 -18.74620 -18.59358 -18.08842 -18.05381 -16.89692 -16.61139 -16.58860 -15.97620 -15.54639 -15.22491 -15.12168 -14.89196 -14.71878 -14.62486 -14.23714 -13.98188 -13.79502 -13.63736 -13.31772 -13.25193 -12.93283 -12.62827 -12.30299 -12.06816 -11.98205 -11.90388 -11.58829 -11.42284 -11.13374 -10.90878 -10.71593 -10.52071 -10.20723 -9.94846 -9.82631 -9.63044 -9.49739 -9.37737 -8.86568 -8.49432 -8.43930 -6.64675 -5.75406 -3.18297 0.38674 0.50147 2.74770 2.80628 3.20450 3.39145 3.46259 3.48524 3.54542 3.82041 4.11944 4.25090 4.51688 4.52493 4.72775 5.14502 5.20902 5.22391 5.32249 5.33608 5.43110 5.48650 5.53165 5.55858 5.70946 5.86400 5.91026 5.98664 6.13890 6.25702 6.33059 6.35097 6.41586 6.50445 6.60602 6.73121 6.83419 6.94533 7.31548 7.64823 7.81524 7.90649 8.47253 8.53187 9.22741 9.87136 10.42346 11.32771 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010488 B = 0.005720 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.133231 B = 4893.605330 C = 6706.962159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.063 0.937 9 C 0.011 3.989 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.292 1.292 15 C 0.160 3.840 16 C 0.124 3.876 17 H 0.079 0.921 18 N -0.680 5.680 19 C 0.564 3.436 20 O -0.521 6.521 21 C -0.165 4.165 22 C 0.165 3.835 23 F -0.098 7.098 24 C -0.140 4.140 25 C -0.083 4.083 26 C 0.050 3.950 27 F -0.124 7.124 28 C 0.128 3.872 29 F -0.112 7.112 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.397 0.603 41 H 0.160 0.840 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 -7.801 2.550 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.382 4.382 8 H 0.081 0.919 9 C -0.189 4.189 10 N -0.542 5.542 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.219 1.219 15 C 0.033 3.967 16 C 0.018 3.982 17 H 0.097 0.903 18 N -0.329 5.329 19 C 0.346 3.654 20 O -0.397 6.397 21 C -0.171 4.171 22 C 0.144 3.856 23 F -0.076 7.076 24 C -0.159 4.159 25 C -0.102 4.102 26 C 0.030 3.970 27 F -0.102 7.102 28 C 0.107 3.893 29 F -0.090 7.090 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.046 0.954 40 H 0.232 0.768 41 H 0.177 0.823 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.930 -7.321 1.669 15.825 hybrid contribution 0.281 -0.864 0.155 0.922 sum -13.649 -8.185 1.824 16.019 Atomic orbital electron populations 1.21857 0.95897 1.01391 1.01089 1.21318 0.94660 0.99961 0.95314 0.90171 1.22086 0.99309 0.99341 0.96119 1.20933 0.90602 0.96600 0.90294 1.43984 1.48310 1.39603 0.99069 1.19081 1.09881 1.02938 1.06279 0.91895 1.24963 0.97093 0.97050 0.99762 1.69999 1.37431 1.28947 1.17774 0.86388 0.79129 0.84234 0.78099 1.20225 1.21238 1.21899 1.21211 0.86320 0.97992 0.91169 1.21932 0.99273 0.79675 0.97284 0.90343 1.45790 1.65344 1.14207 1.07585 1.17418 0.78720 0.84071 0.85166 1.90831 1.49868 1.68383 1.30668 1.20081 0.91625 0.96560 1.08816 1.17453 0.78667 0.91951 0.97518 1.91746 1.29308 1.94418 1.92141 1.21075 0.96298 0.95334 1.03171 1.20972 0.91405 0.99427 0.98416 1.17403 0.79310 0.91506 1.08821 1.91552 1.30785 1.93945 1.93954 1.17213 0.85472 0.83870 1.02746 1.91588 1.65540 1.58850 1.93008 0.93126 0.93001 0.93029 0.92658 0.92839 0.92800 0.96359 0.93655 0.88368 0.95425 0.76752 0.82272 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.05 37.16 0.34 -1.55 16 2 C -0.09 -1.45 2.48 -90.58 -0.22 -1.68 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.13 -2.01 5.20 -26.61 -0.14 -2.15 16 5 C 0.14 2.78 6.52 -3.71 -0.02 2.76 16 6 N -0.59 -13.99 2.91 -172.32 -0.50 -14.49 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 C 0.01 0.29 4.91 -17.43 -0.09 0.21 16 10 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 11 Si 0.89 22.02 29.59 -169.99 -5.03 16.99 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 C 0.16 3.80 4.91 -3.71 -0.02 3.78 16 16 C 0.12 2.35 2.24 -67.81 -0.15 2.20 16 17 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 18 N -0.68 -12.38 4.25 -54.73 -0.23 -12.62 16 19 C 0.56 11.06 6.51 -12.46 -0.08 10.98 16 20 O -0.52 -12.17 16.77 5.29 0.09 -12.08 16 21 C -0.17 -2.67 5.64 -104.87 -0.59 -3.26 16 22 C 0.16 2.49 7.29 -38.97 -0.28 2.21 16 23 F -0.10 -1.89 16.83 2.25 0.04 -1.86 16 24 C -0.14 -1.46 10.01 -39.57 -0.40 -1.85 16 25 C -0.08 -0.74 10.01 -39.47 -0.40 -1.13 16 26 C 0.05 0.57 7.29 -39.43 -0.29 0.28 16 27 F -0.12 -1.42 17.18 2.25 0.04 -1.38 16 28 C 0.13 1.79 7.30 -38.90 -0.28 1.51 16 29 F -0.11 -1.67 16.74 2.25 0.04 -1.63 16 30 H 0.05 0.66 7.54 -51.93 -0.39 0.26 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 35 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 2.76 6.04 -51.93 -0.31 2.45 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.40 6.54 6.63 -40.82 -0.27 6.27 16 41 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -32.04 358.98 -7.34 -39.39 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.04 Total: 2.64 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.77 Total: 5.44 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.11 Total: -52.92 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.11 Total: -4.87 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.04 -7.34 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968103457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.685 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds