Wall clock time and date at job start Wed Apr 1 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.46125 * 2 1 4 4 C 1.53049 * 109.46030 * 240.03085 * 2 1 3 5 5 C 1.53192 * 109.31262 * 178.61292 * 4 2 1 6 6 N 1.46929 * 108.77548 * 54.63447 * 5 4 2 7 7 C 1.36935 * 120.62734 * 126.36907 * 6 5 4 8 8 H 1.07998 * 119.99812 * 207.68031 * 7 6 5 9 9 C 1.38807 * 120.00249 * 27.68424 * 7 6 5 10 10 N 1.31622 * 120.00399 * 17.36761 * 9 7 6 11 11 Si 1.86806 * 120.00130 * 197.37103 * 9 7 6 12 12 H 1.48497 * 109.47018 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46924 * 119.99913 * 11 9 7 14 14 H 1.48500 * 109.47193 * 240.00009 * 11 9 7 15 15 C 1.46925 * 118.73773 * 306.39217 * 6 5 4 16 16 C 1.53036 * 109.46620 * 119.96240 * 2 1 3 17 17 H 1.09008 * 109.49541 * 61.40034 * 16 2 1 18 18 N 1.46501 * 109.49553 * 301.34199 * 16 2 1 19 19 C 1.34774 * 120.00057 * 154.99601 * 18 16 2 20 20 O 1.21602 * 120.00150 * 359.97438 * 19 18 16 21 21 C 1.47427 * 119.99863 * 179.97438 * 19 18 16 22 22 C 1.39983 * 120.15908 * 89.72674 * 21 19 18 23 23 F 1.35100 * 120.08431 * 359.97223 * 22 21 19 24 24 C 1.38102 * 119.83299 * 179.69613 * 22 21 19 25 25 C 1.38603 * 120.15980 * 0.60340 * 24 22 21 26 26 F 1.35098 * 119.83399 * 179.69736 * 25 24 22 27 27 C 1.38602 * 120.33361 * 359.67055 * 25 24 22 28 28 C 1.38102 * 120.16350 * 0.02724 * 27 25 24 29 29 F 1.35091 * 120.08319 * 180.02562 * 28 27 25 30 30 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47103 * 299.96824 * 1 2 3 32 32 H 1.09004 * 109.47466 * 59.97041 * 1 2 3 33 33 H 1.09002 * 109.49343 * 58.66369 * 4 2 1 34 34 H 1.08997 * 109.49419 * 298.56688 * 4 2 1 35 35 H 1.08998 * 109.58377 * 174.42215 * 5 4 2 36 36 H 1.09006 * 109.58809 * 294.84584 * 5 4 2 37 37 H 0.96996 * 120.00742 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58223 * 293.81607 * 15 6 5 39 39 H 1.08999 * 109.57983 * 173.39820 * 15 6 5 40 40 H 0.97005 * 119.99696 * 334.99053 * 18 16 2 41 41 H 1.07999 * 119.91778 * 180.27584 * 24 22 21 42 42 H 1.07995 * 119.91988 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9757 -2.2739 0.0000 8 1 5.0086 -2.9661 0.8284 9 6 5.8538 -2.4234 -1.0646 10 7 6.0602 -1.4218 -1.8932 11 14 6.7425 -4.0463 -1.3215 12 1 6.3395 -5.0047 -0.2612 13 1 6.3849 -4.6013 -2.6517 14 1 8.2092 -3.8232 -1.2563 15 6 3.5713 -0.6885 1.2642 16 6 2.0399 -0.7206 1.2500 17 1 1.6974 -1.7554 1.2386 18 7 1.5256 -0.0485 2.4459 19 6 1.3971 -0.7320 3.6003 20 8 1.7077 -1.9067 3.6493 21 6 0.8801 -0.0555 4.8039 22 6 -0.4950 -0.0390 5.0653 23 9 -1.3534 -0.6430 4.2146 24 6 -0.9715 0.5913 6.1980 25 6 -0.0929 1.2172 7.0683 26 9 -0.5668 1.8371 8.1712 27 6 1.2694 1.2100 6.8131 28 6 1.7612 0.5784 5.6877 29 9 3.0893 0.5719 5.4408 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3634 0.5143 -0.8897 33 1 1.6571 -0.2208 -2.1399 34 1 1.6977 -1.7557 -1.2382 35 1 3.9416 -1.2846 -2.0984 36 1 3.9142 0.3409 -1.3675 37 1 6.6741 -1.5261 -2.6369 38 1 3.9143 0.3410 1.3672 39 1 3.9417 -1.2844 2.0983 40 1 1.2775 0.8884 2.4067 41 1 -2.0317 0.6010 6.4033 42 1 1.9480 1.6994 7.4959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968104624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:53 Heat of formation + Delta-G solvation = -123.518216 kcal Electronic energy + Delta-G solvation = -30324.189886 eV Core-core repulsion = 25662.345988 eV Total energy + Delta-G solvation = -4661.843899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.65020 -49.55586 -49.48275 -40.13495 -38.72051 -37.53570 -34.53972 -33.10980 -31.47658 -31.18533 -31.05607 -28.87561 -27.31488 -24.67753 -23.96637 -23.72107 -22.34562 -21.10706 -20.59937 -19.59768 -19.08948 -18.38741 -17.86219 -16.95437 -16.72104 -16.46548 -16.43345 -16.00722 -15.78516 -15.66564 -15.51299 -14.89430 -14.79576 -14.45985 -14.34084 -13.73780 -13.52427 -13.40072 -13.23998 -12.99352 -12.79727 -12.50409 -12.44565 -12.19179 -12.03350 -11.66368 -11.52095 -11.05683 -10.81198 -10.68268 -10.27699 -10.19977 -10.14711 -9.88433 -9.67390 -9.58324 -9.50492 -9.40243 -8.90394 -8.41135 -6.67749 -5.77792 -3.19792 0.07467 0.26295 2.42632 2.49621 2.90565 3.11334 3.40022 3.47989 3.52265 3.59186 3.64270 4.15078 4.20363 4.36237 4.55077 5.02326 5.06454 5.09121 5.15064 5.17534 5.26460 5.32760 5.37421 5.46038 5.58887 5.87095 5.93185 6.02530 6.03441 6.13968 6.19729 6.27898 6.49454 6.59601 6.62716 6.70574 6.81011 6.95260 7.34941 7.53406 7.64678 7.84606 8.17325 8.46328 9.22783 9.84836 10.40182 11.31000 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002993 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.879227 B = 9352.327312 C =10181.952199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.142 3.858 16 C 0.131 3.869 17 H 0.089 0.911 18 N -0.704 5.704 19 C 0.561 3.439 20 O -0.510 6.510 21 C -0.205 4.205 22 C 0.196 3.804 23 F -0.110 7.110 24 C -0.204 4.204 25 C 0.176 3.824 26 F -0.118 7.118 27 C -0.203 4.203 28 C 0.198 3.802 29 F -0.106 7.106 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.059 0.941 40 H 0.397 0.603 41 H 0.162 0.838 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 9.602 14.719 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.732 3.268 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.014 3.986 16 C 0.026 3.974 17 H 0.107 0.893 18 N -0.353 5.353 19 C 0.344 3.656 20 O -0.385 6.385 21 C -0.210 4.210 22 C 0.175 3.825 23 F -0.088 7.088 24 C -0.224 4.224 25 C 0.156 3.844 26 F -0.097 7.097 27 C -0.223 4.223 28 C 0.178 3.822 29 F -0.084 7.084 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.231 0.769 41 H 0.180 0.820 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.680 8.715 14.579 23.117 hybrid contribution 0.346 -0.241 -0.114 0.437 sum -15.334 8.475 14.466 22.720 Atomic orbital electron populations 1.21857 0.95902 1.01677 1.00752 1.21313 0.94633 0.99714 0.95338 0.91366 1.22253 1.00675 0.99588 0.94768 1.20860 0.87299 0.97353 0.90374 1.44006 1.48093 1.39800 0.99065 1.19267 1.09708 1.02762 1.06192 0.91485 1.25014 0.97209 0.97537 0.99834 1.70045 1.37798 1.28994 1.17989 0.86221 0.79078 0.83730 0.77804 1.20138 1.21536 1.21729 1.21182 0.89782 0.96815 0.90834 1.21907 0.96982 0.97044 0.81466 0.89264 1.46111 1.64873 1.14212 1.10151 1.17546 0.78948 0.86639 0.82500 1.90891 1.48508 1.15138 1.83979 1.20165 0.92847 1.07208 1.00804 1.16772 0.85016 0.92671 0.88048 1.91627 1.68546 1.80117 1.68509 1.20986 1.02404 1.03908 0.95102 1.16897 0.90760 0.92992 0.83755 1.91589 1.88660 1.79606 1.49811 1.21023 0.95230 1.06316 0.99728 1.16807 0.77977 0.94743 0.92688 1.91662 1.29218 1.93845 1.93643 0.92826 0.93476 0.92850 0.92611 0.92347 0.89165 0.96287 0.93714 0.96336 0.92279 0.76936 0.82034 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.02 37.15 0.34 -1.52 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.64 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -2.44 5.36 -26.61 -0.14 -2.58 16 5 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 6 N -0.59 -14.89 2.99 -172.33 -0.52 -15.41 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 10 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 11 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.14 3.09 6.09 -3.72 -0.02 3.07 16 16 C 0.13 2.33 2.06 -67.82 -0.14 2.19 16 17 H 0.09 1.83 7.58 -51.92 -0.39 1.44 16 18 N -0.70 -10.22 4.36 -54.77 -0.24 -10.46 16 19 C 0.56 8.85 6.50 -12.52 -0.08 8.77 16 20 O -0.51 -10.37 16.77 5.28 0.09 -10.28 16 21 C -0.20 -2.45 5.64 -104.85 -0.59 -3.04 16 22 C 0.20 1.95 7.29 -38.98 -0.28 1.66 16 23 F -0.11 -1.23 16.83 2.25 0.04 -1.19 16 24 C -0.20 -1.49 9.99 -39.50 -0.39 -1.88 16 25 C 0.18 1.27 7.30 -39.31 -0.29 0.99 16 26 F -0.12 -0.85 17.26 2.25 0.04 -0.81 16 27 C -0.20 -1.56 9.99 -39.50 -0.39 -1.95 16 28 C 0.20 2.10 7.29 -38.98 -0.28 1.82 16 29 F -0.11 -1.34 16.83 2.25 0.04 -1.30 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.09 2.38 6.03 -51.93 -0.31 2.06 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 40 H 0.40 4.53 8.29 -40.82 -0.34 4.19 16 41 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -32.03 362.24 -7.44 -39.47 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.19 Total: 0.52 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.74 Total: 2.55 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.13 Total: -51.50 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.11 Total: -3.31 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.03 -7.44 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968104624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.053 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds