Wall clock time and date at job start Wed Apr 1 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46564 * 2 1 4 4 C 1.53046 * 109.45790 * 119.95325 * 2 1 3 5 5 C 1.53190 * 109.31281 * 181.38303 * 4 2 1 6 6 N 1.46928 * 108.77704 * 305.36707 * 5 4 2 7 7 C 1.36932 * 120.62742 * 233.62919 * 6 5 4 8 8 H 1.08007 * 119.99621 * 152.61036 * 7 6 5 9 9 C 1.38811 * 120.00415 * 332.60771 * 7 6 5 10 10 N 1.31620 * 119.99933 * 159.36253 * 9 7 6 11 11 Si 1.86798 * 120.00113 * 339.35772 * 9 7 6 12 12 H 1.48496 * 109.46899 * 92.90191 * 11 9 7 13 13 H 1.48496 * 109.47202 * 212.90397 * 11 9 7 14 14 H 1.48503 * 109.46761 * 332.90616 * 11 9 7 15 15 C 1.46922 * 118.73740 * 53.61118 * 6 5 4 16 16 C 1.53038 * 109.46214 * 240.01916 * 2 1 3 17 17 H 1.09005 * 109.49605 * 58.66731 * 16 2 1 18 18 N 1.46502 * 109.50251 * 298.60268 * 16 2 1 19 19 C 1.34770 * 120.00317 * 154.99679 * 18 16 2 20 20 O 1.21593 * 119.99728 * 0.02562 * 19 18 16 21 21 C 1.47569 * 120.00395 * 180.02562 * 19 18 16 22 22 C 1.39759 * 120.12664 * 359.73008 * 21 19 18 23 23 C 1.37923 * 119.87486 * 179.72336 * 22 21 19 24 24 F 1.35093 * 119.92664 * 180.29305 * 23 22 21 25 25 C 1.38951 * 120.14331 * 0.52410 * 23 22 21 26 26 F 1.35099 * 119.86352 * 179.74395 * 25 23 22 27 27 C 1.38450 * 120.26559 * 359.77018 * 25 23 22 28 28 C 1.38213 * 120.12331 * 359.95302 * 27 25 23 29 29 F 1.35100 * 120.07421 * 180.02562 * 28 27 25 30 30 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47257 * 299.98213 * 1 2 3 32 32 H 1.09003 * 109.46683 * 59.97662 * 1 2 3 33 33 H 1.08997 * 109.49680 * 301.33981 * 4 2 1 34 34 H 1.09009 * 109.49428 * 61.43429 * 4 2 1 35 35 H 1.09003 * 109.58642 * 185.58109 * 5 4 2 36 36 H 1.09000 * 109.70404 * 65.22646 * 5 4 2 37 37 H 0.97000 * 119.99782 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.58454 * 186.60636 * 15 6 5 39 39 H 1.08993 * 109.58866 * 66.17447 * 15 6 5 40 40 H 0.96998 * 119.99661 * 335.00061 * 18 16 2 41 41 H 1.07997 * 120.06536 * 359.97438 * 22 21 19 42 42 H 1.07994 * 119.93823 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5713 -0.6884 1.2645 6 7 4.0678 -1.2489 0.0004 7 6 4.9756 -2.2741 0.0007 8 1 5.0116 -2.9637 -0.8298 9 6 5.8496 -2.4270 1.0682 10 7 6.4257 -3.5902 1.2857 11 14 6.2083 -0.9817 2.1960 12 1 5.2790 -1.0148 3.3537 13 1 7.6086 -1.0691 2.6825 14 1 6.0224 0.2877 1.4482 15 6 3.5714 -0.6889 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6573 -0.2212 -2.1398 18 7 1.5795 -2.1118 -1.2342 19 6 1.4509 -2.7921 -2.3905 20 8 1.7175 -2.2518 -3.4466 21 6 0.9867 -4.1928 -2.3748 22 6 0.6849 -4.8182 -1.1619 23 6 0.2459 -6.1257 -1.1538 24 9 -0.0517 -6.7294 0.0176 25 6 0.1137 -6.8249 -2.3473 26 9 -0.3118 -8.1070 -2.3323 27 6 0.4169 -6.2130 -3.5517 28 6 0.8523 -4.9014 -3.5731 29 9 1.1473 -4.3051 -4.7490 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2203 2.1399 34 1 1.6977 -1.7555 1.2387 35 1 3.9415 -1.2842 2.0988 36 1 3.9164 0.3403 1.3686 37 1 7.0362 -3.6971 2.0318 38 1 3.9417 -1.2850 -2.0980 39 1 3.9143 0.3405 -1.3672 40 1 1.3671 -2.5428 -0.3917 41 1 0.7913 -4.2775 -0.2332 42 1 0.3127 -6.7615 -4.4761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968111071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:07 Heat of formation + Delta-G solvation = -114.428056 kcal Electronic energy + Delta-G solvation = -30967.527616 eV Core-core repulsion = 26306.077896 eV Total energy + Delta-G solvation = -4661.449720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.80373 -49.09778 -48.85189 -40.28885 -38.75068 -37.55631 -34.50367 -33.13278 -31.65347 -31.43384 -30.41379 -29.51724 -27.65403 -24.74854 -23.96707 -23.44507 -22.69613 -21.41756 -21.00247 -19.10090 -18.78450 -18.22268 -17.87725 -16.94125 -16.76101 -16.68907 -15.77368 -15.69393 -15.38214 -15.30826 -15.25284 -14.81110 -14.76969 -14.73594 -14.25875 -13.95766 -13.81737 -13.55334 -13.48211 -13.32779 -12.61380 -12.55756 -12.36987 -12.09731 -11.97603 -11.91548 -11.66427 -11.56266 -11.30588 -10.75435 -10.67412 -10.30341 -10.00433 -9.80873 -9.77549 -9.57281 -9.47878 -9.00418 -8.87803 -8.52431 -7.00467 -5.98655 -3.34903 0.12424 0.49058 2.42974 3.13118 3.26787 3.28482 3.43141 3.45555 3.47395 3.64672 4.02334 4.05259 4.37991 4.48502 4.68830 4.88260 4.90403 5.03647 5.11353 5.12087 5.20533 5.29251 5.37476 5.48137 5.58744 5.65285 5.66403 5.77594 5.90182 5.99559 6.01513 6.13852 6.23605 6.27296 6.30095 6.45458 6.55477 6.61897 6.69046 6.84370 7.66545 7.91815 8.28830 8.33548 8.89980 9.67986 10.04278 11.17170 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.004086 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.875685 B = 6851.059918 C = 7628.669684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.122 3.878 6 N -0.602 5.602 7 C -0.256 4.256 8 H 0.084 0.916 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.290 1.290 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.136 3.864 16 C 0.134 3.866 17 H 0.086 0.914 18 N -0.691 5.691 19 C 0.560 3.440 20 O -0.527 6.527 21 C -0.144 4.144 22 C -0.059 4.059 23 C 0.055 3.945 24 F -0.120 7.120 25 C 0.121 3.879 26 F -0.117 7.117 27 C -0.176 4.176 28 C 0.182 3.818 29 F -0.100 7.100 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.399 0.601 41 H 0.160 0.840 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 -0.744 -4.659 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.170 4.170 5 C -0.004 4.004 6 N -0.325 5.325 7 C -0.385 4.385 8 H 0.101 0.899 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.714 3.286 12 H -0.218 1.218 13 H -0.233 1.233 14 H -0.196 1.196 15 C 0.009 3.991 16 C 0.029 3.971 17 H 0.104 0.896 18 N -0.342 5.342 19 C 0.345 3.655 20 O -0.405 6.405 21 C -0.149 4.149 22 C -0.079 4.079 23 C 0.034 3.966 24 F -0.098 7.098 25 C 0.100 3.900 26 F -0.095 7.095 27 C -0.195 4.195 28 C 0.161 3.839 29 F -0.078 7.078 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.236 0.764 41 H 0.178 0.822 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.220 -0.481 -5.319 17.076 hybrid contribution 0.259 0.136 1.286 1.319 sum -15.960 -0.345 -4.034 16.466 Atomic orbital electron populations 1.21844 0.95419 1.01601 1.01364 1.21339 0.95142 0.99957 0.94983 0.89984 1.22096 0.98680 0.99858 0.96350 1.21379 0.91475 0.97165 0.90333 1.44320 1.48849 1.40284 0.99076 1.18870 1.09798 1.02529 1.07268 0.89879 1.25278 0.97363 0.96596 0.98264 1.69833 1.32568 1.22003 1.30604 0.86964 0.76301 0.84892 0.80475 1.21750 1.23271 1.19621 1.21346 0.90399 0.97362 0.90008 1.21608 0.97079 0.80427 0.98004 0.89574 1.45767 1.66222 1.14085 1.08123 1.17581 0.78576 0.84591 0.84726 1.90839 1.50310 1.69001 1.30345 1.20074 1.06096 0.96687 0.92009 1.21143 0.95279 0.92462 0.98985 1.17384 1.06072 0.92228 0.80873 1.91581 1.90946 1.82943 1.44327 1.17403 0.99983 0.80010 0.92618 1.91578 1.86835 1.33921 1.97150 1.20895 1.05429 0.94565 0.98657 1.17196 0.95638 0.89758 0.81354 1.91652 1.89538 1.83090 1.43503 0.92927 0.92756 0.92854 0.92189 0.92247 0.90827 0.95559 0.92788 0.91158 0.94867 0.76424 0.82205 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.05 37.16 0.34 -1.20 16 2 C -0.10 -1.25 2.48 -90.58 -0.22 -1.47 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.07 16 5 C 0.12 2.40 4.21 -3.71 -0.02 2.39 16 6 N -0.60 -13.21 2.69 -172.32 -0.46 -13.68 16 7 C -0.26 -6.84 10.03 -15.06 -0.15 -6.99 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 10 N -0.91 -27.12 13.97 55.49 0.78 -26.34 16 11 Si 0.88 21.68 24.34 -169.99 -4.14 17.54 16 12 H -0.29 -6.80 6.62 56.52 0.37 -6.43 16 13 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 14 H -0.27 -6.55 6.64 56.52 0.38 -6.18 16 15 C 0.14 2.59 6.12 -3.71 -0.02 2.56 16 16 C 0.13 2.05 2.24 -67.81 -0.15 1.90 16 17 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 18 N -0.69 -10.25 4.20 -54.72 -0.23 -10.48 16 19 C 0.56 8.94 7.73 -12.46 -0.10 8.85 16 20 O -0.53 -9.99 14.99 5.28 0.08 -9.91 16 21 C -0.14 -1.95 5.88 -104.92 -0.62 -2.57 16 22 C -0.06 -0.69 9.51 -39.13 -0.37 -1.07 16 23 C 0.05 0.64 7.29 -39.43 -0.29 0.35 16 24 F -0.12 -1.49 17.17 2.25 0.04 -1.45 16 25 C 0.12 1.32 7.31 -39.24 -0.29 1.04 16 26 F -0.12 -1.30 17.17 2.25 0.04 -1.26 16 27 C -0.18 -1.80 9.99 -39.51 -0.39 -2.19 16 28 C 0.18 2.32 7.28 -38.98 -0.28 2.04 16 29 F -0.10 -1.46 15.54 2.25 0.03 -1.42 16 30 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.86 6.40 -51.92 -0.33 0.53 16 35 H 0.07 1.62 4.50 -51.93 -0.23 1.39 16 36 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.40 5.40 4.67 -40.82 -0.19 5.21 16 41 H 0.16 1.66 6.40 -52.49 -0.34 1.32 16 42 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -31.21 347.21 -6.23 -37.45 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.80 Total: 2.16 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.80 Total: 2.15 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.08 Total: -50.49 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.11 Total: -4.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -6.23 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968111071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.981 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds