Wall clock time and date at job start Wed Apr 1 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46519 * 2 1 4 4 N 1.46490 * 109.47423 * 239.99465 * 2 1 3 5 5 C 1.34783 * 119.99996 * 85.00177 * 4 2 1 6 6 O 1.21548 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.47846 * 120.00334 * 179.97438 * 5 4 2 8 8 C 1.39600 * 120.13939 * 359.72605 * 7 5 4 9 9 C 1.37945 * 119.84844 * 179.79024 * 8 7 5 10 10 C 1.38379 * 120.14504 * 0.48478 * 9 8 7 11 11 C 1.38344 * 120.29307 * 359.74491 * 10 9 8 12 12 C 1.50693 * 119.92595 * 180.02562 * 11 10 9 13 13 F 1.39901 * 109.47172 * 270.01991 * 12 11 10 14 14 F 1.39902 * 109.47284 * 30.02427 * 12 11 10 15 15 F 1.39907 * 109.47262 * 150.02147 * 12 11 10 16 16 C 1.37982 * 120.14278 * 0.02562 * 11 10 9 17 17 C 1.52998 * 109.46818 * 119.99533 * 2 1 3 18 18 C 1.53504 * 114.20785 * 300.00392 * 17 2 1 19 19 N 1.47069 * 87.98363 * 220.34571 * 18 17 2 20 20 C 1.36941 * 136.05552 * 207.07801 * 19 18 17 21 21 H 1.08000 * 119.99396 * 7.56018 * 20 19 18 22 22 C 1.38806 * 119.99993 * 187.55101 * 20 19 18 23 23 N 1.31621 * 119.99759 * 174.37714 * 22 20 19 24 24 Si 1.86799 * 119.99972 * 354.38427 * 22 20 19 25 25 H 1.48501 * 109.46963 * 174.94900 * 24 22 20 26 26 H 1.48498 * 109.47184 * 294.94894 * 24 22 20 27 27 H 1.48507 * 109.47082 * 54.95224 * 24 22 20 28 28 C 1.47064 * 87.88742 * 27.34488 * 19 18 17 29 29 H 1.08998 * 109.47717 * 299.99996 * 1 2 3 30 30 H 1.09003 * 109.46641 * 60.00995 * 1 2 3 31 31 H 1.09005 * 109.46427 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00448 * 264.99917 * 4 2 1 33 33 H 1.08000 * 120.07496 * 359.97438 * 8 7 5 34 34 H 1.07995 * 119.92485 * 180.22946 * 9 8 7 35 35 H 1.07998 * 119.85253 * 179.76962 * 10 9 8 36 36 H 1.08002 * 120.07250 * 179.97438 * 16 11 10 37 37 H 1.09002 * 113.41395 * 73.20134 * 17 2 1 38 38 H 1.08997 * 113.46758 * 105.56146 * 18 17 2 39 39 H 1.09000 * 113.51898 * 335.13170 * 18 17 2 40 40 H 0.96993 * 120.00423 * 354.88754 * 23 22 20 41 41 H 1.08993 * 113.47012 * 87.43421 * 28 19 18 42 42 H 1.09000 * 113.46758 * 217.87997 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0184 -2.3571 6 8 1.8577 1.1609 -2.4119 7 6 2.6406 -0.7152 -3.5640 8 6 2.9794 -2.0681 -3.5031 9 6 3.4351 -2.7134 -4.6339 10 6 3.5661 -2.0202 -5.8244 11 6 3.2366 -0.6782 -5.8904 12 6 3.3820 0.0685 -7.1912 13 9 4.6656 0.6191 -7.2719 14 9 3.1845 -0.8130 -8.2595 15 9 2.4307 1.0927 -7.2498 16 6 2.7752 -0.0220 -4.7677 17 6 2.0400 -0.7212 1.2493 18 6 1.5897 -0.0844 2.5715 19 7 2.9388 -0.3443 3.0960 20 6 3.4924 -0.5599 4.3299 21 1 2.8555 -0.6813 5.1936 22 6 4.8719 -0.6226 4.4703 23 7 5.4077 -0.7188 5.6687 24 14 5.9679 -0.5703 2.9586 25 1 7.3912 -0.5288 3.3803 26 1 5.7313 -1.7820 2.1334 27 1 5.6527 0.6416 2.1603 28 6 3.4328 -0.2640 1.7132 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3632 -1.0278 0.0005 32 1 2.2492 -1.6318 -1.1524 33 1 2.8822 -2.6090 -2.5733 34 1 3.6940 -3.7609 -4.5890 35 1 3.9268 -2.5292 -6.7059 36 1 2.5187 1.0258 -4.8204 37 1 1.9118 -1.8028 1.2077 38 1 0.8093 -0.6491 3.0816 39 1 1.3543 0.9764 2.4855 40 1 4.8446 -0.6713 6.4570 41 1 3.6836 0.7494 1.4000 42 1 4.2228 -0.9818 1.4921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970786042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:09 Heat of formation + Delta-G solvation = -122.074550 kcal Electronic energy + Delta-G solvation = -29251.815699 eV Core-core repulsion = 24590.034403 eV Total energy + Delta-G solvation = -4661.781297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.23252 -48.74918 -48.69991 -41.55842 -40.48253 -39.39456 -36.39608 -34.59381 -33.56733 -32.48945 -31.48922 -29.48921 -27.20274 -27.00855 -25.79542 -24.82962 -23.25597 -22.67621 -21.59894 -21.08044 -19.74478 -19.56110 -19.53659 -19.41076 -17.88450 -17.66579 -17.22157 -17.09876 -16.21043 -16.03386 -15.85026 -15.77795 -15.57535 -15.37741 -15.17250 -15.15100 -15.05219 -14.94790 -14.85635 -14.71038 -14.41557 -13.85454 -13.73605 -13.61827 -13.28642 -13.22319 -13.11601 -12.89783 -12.52397 -12.36713 -12.33783 -12.11658 -11.71891 -11.33179 -11.10699 -11.05999 -10.84182 -10.43846 -10.26421 -10.02981 -9.23636 -8.62208 -5.48616 -0.41263 -0.06186 1.35885 1.47589 1.55168 1.66058 1.67293 2.02349 2.53169 2.56919 2.63720 2.95254 2.97815 3.17679 3.34297 3.40705 3.60141 3.75247 3.83973 3.94012 4.00364 4.20015 4.24048 4.37372 4.42226 4.48181 4.58377 4.66558 4.69114 4.74114 4.79959 4.86745 4.96580 5.06001 5.09738 5.16294 5.19548 5.30017 5.39011 5.51877 5.60501 5.94552 6.48623 6.69214 7.14311 7.31937 8.26784 8.89311 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.002479 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.058942 B =11290.003726 C =12034.390375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.069 0.931 4 N -0.703 5.703 5 C 0.557 3.443 6 O -0.577 6.577 7 C -0.148 4.148 8 C -0.047 4.047 9 C -0.114 4.114 10 C -0.043 4.043 11 C -0.201 4.201 12 C 0.511 3.489 13 F -0.181 7.181 14 F -0.173 7.173 15 F -0.184 7.184 16 C -0.030 4.030 17 C -0.101 4.101 18 C 0.129 3.871 19 N -0.663 5.663 20 C -0.290 4.290 21 H 0.052 0.948 22 C -0.087 4.087 23 N -0.972 5.972 24 Si 1.108 2.892 25 H -0.306 1.306 26 H -0.260 1.260 27 H -0.271 1.271 28 C 0.092 3.908 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.246 0.754 41 H 0.040 0.960 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -7.064 -30.028 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.087 0.913 4 N -0.355 5.355 5 C 0.345 3.655 6 O -0.458 6.458 7 C -0.151 4.151 8 C -0.065 4.065 9 C -0.131 4.131 10 C -0.061 4.061 11 C -0.203 4.203 12 C 0.457 3.543 13 F -0.162 7.162 14 F -0.154 7.154 15 F -0.165 7.165 16 C -0.049 4.049 17 C -0.121 4.121 18 C 0.004 3.996 19 N -0.391 5.391 20 C -0.417 4.417 21 H 0.069 0.931 22 C -0.279 4.279 23 N -0.617 5.617 24 Si 0.934 3.066 25 H -0.235 1.235 26 H -0.186 1.186 27 H -0.197 1.197 28 C -0.033 4.033 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.182 0.818 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.386 -6.355 -30.323 31.634 hybrid contribution -1.395 0.596 1.189 1.928 sum -7.781 -5.759 -29.134 30.700 Atomic orbital electron populations 1.22062 0.93233 1.03413 1.02326 1.20821 0.95257 0.96178 0.82307 0.91265 1.45850 1.66247 1.14775 1.08583 1.18461 0.77157 0.86087 0.83785 1.90777 1.52078 1.17332 1.85584 1.19816 1.06436 0.95822 0.93023 1.21975 0.91828 0.91774 1.00918 1.21579 0.98528 1.02440 0.90562 1.21557 0.92867 0.91034 1.00638 1.19921 1.11053 0.97008 0.92304 1.18296 0.73650 0.77278 0.85073 1.93231 1.39752 1.86519 1.96745 1.93196 1.94787 1.68409 1.59001 1.93200 1.64959 1.61556 1.96780 1.20956 0.92739 1.00422 0.90795 1.23264 0.94899 1.01460 0.92431 1.22489 0.88016 0.98111 0.91032 1.46126 1.07032 1.84132 1.01825 1.20039 0.91941 1.45320 0.84437 0.93054 1.27062 0.96290 0.99730 1.04822 1.71013 1.37423 1.55587 0.97688 0.83274 0.73381 0.78154 0.71749 1.23463 1.18559 1.19723 1.23042 0.97461 0.98535 0.84248 0.90914 0.93078 0.90364 0.74618 0.81662 0.80184 0.81827 0.85202 0.85861 0.92391 0.93488 0.94479 0.94182 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.29 71.98 0.67 -2.36 16 2 C 0.16 3.77 2.47 44.99 0.11 3.88 16 3 H 0.07 2.02 7.32 -2.39 -0.02 2.00 16 4 N -0.70 -13.56 5.03 -445.42 -2.24 -15.80 16 5 C 0.56 13.05 7.74 86.79 0.67 13.72 16 6 O -0.58 -18.51 16.01 -3.87 -0.06 -18.57 16 7 C -0.15 -2.63 5.87 -20.09 -0.12 -2.74 16 8 C -0.05 -0.46 9.54 22.53 0.21 -0.24 16 9 C -0.11 -0.75 10.03 22.23 0.22 -0.53 16 10 C -0.04 -0.41 9.39 22.33 0.21 -0.20 16 11 C -0.20 -3.11 5.45 -19.90 -0.11 -3.22 16 12 C 0.51 8.62 3.36 71.23 0.24 8.86 16 13 F -0.18 -3.39 17.30 44.97 0.78 -2.61 16 14 F -0.17 -2.61 16.45 44.97 0.74 -1.87 16 15 F -0.18 -3.62 16.46 44.97 0.74 -2.88 16 16 C -0.03 -0.58 8.94 22.53 0.20 -0.38 16 17 C -0.10 -2.78 3.67 -10.37 -0.04 -2.81 16 18 C 0.13 4.51 7.33 83.18 0.61 5.12 16 19 N -0.66 -31.11 3.69 -737.86 -2.72 -33.83 16 20 C -0.29 -16.77 11.08 84.03 0.93 -15.84 16 21 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 22 C -0.09 -5.24 5.50 84.86 0.47 -4.77 16 23 N -0.97 -63.10 13.70 21.65 0.30 -62.80 16 24 Si 1.11 53.20 25.16 68.60 1.73 54.92 16 25 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 26 H -0.26 -10.90 6.51 99.48 0.65 -10.25 16 27 H -0.27 -12.16 6.21 99.48 0.62 -11.54 16 28 C 0.09 3.49 5.27 83.27 0.44 3.93 16 29 H 0.07 1.43 7.48 -2.39 -0.02 1.41 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.42 5.14 6.64 -92.71 -0.62 4.52 16 33 H 0.17 0.67 6.41 -2.91 -0.02 0.65 16 34 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 35 H 0.16 0.77 7.59 -2.91 -0.02 0.75 16 36 H 0.13 2.92 7.19 -2.91 -0.02 2.90 16 37 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 41 H 0.04 1.59 7.44 -2.39 -0.02 1.57 16 42 H 0.05 2.00 4.73 -2.39 -0.01 1.99 16 Total: -1.00 -78.81 358.89 4.25 -74.55 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.28 Total: 6.48 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 4.72 Total: 2.41 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.67 Total: -112.42 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 2.26 Total: -7.37 kcal Atomic # 14 Polarization: 53.20 SS G_CDS: 1.73 Total: 54.92 kcal Total: -78.81 4.25 -74.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970786042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.524 kcal (2) G-P(sol) polarization free energy of solvation -78.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds