Wall clock time and date at job start Wed Apr 1 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99655 * 2 1 4 4 C 1.54338 * 109.98965 * 238.96322 * 2 1 3 5 5 H 1.09000 * 110.85220 * 100.20009 * 4 2 1 6 6 N 1.46495 * 110.67068 * 337.04678 * 4 2 1 7 7 C 1.36937 * 120.00037 * 96.32246 * 6 4 2 8 8 H 1.07996 * 119.99867 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00099 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00104 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47280 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46864 * 119.99967 * 11 9 7 14 14 H 1.48497 * 109.47246 * 239.99665 * 11 9 7 15 15 C 1.55161 * 103.02042 * 218.66302 * 4 2 1 16 16 C 1.54916 * 101.58159 * 35.30620 * 15 4 2 17 17 N 1.47024 * 109.88349 * 121.09551 * 2 1 3 18 18 C 1.34770 * 125.64841 * 298.39402 * 17 2 1 19 19 O 1.21577 * 120.00018 * 3.74304 * 18 17 2 20 20 C 1.47690 * 120.00066 * 183.74189 * 18 17 2 21 21 C 1.39657 * 120.16891 * 324.21273 * 20 18 17 22 22 C 1.37856 * 119.88049 * 179.97438 * 21 20 18 23 23 C 1.38456 * 120.21765 * 359.97438 * 22 21 20 24 24 C 1.38209 * 120.34068 * 0.02562 * 23 22 21 25 25 C 1.50695 * 119.93980 * 180.02562 * 24 23 22 26 26 F 1.39902 * 109.46872 * 119.98053 * 25 24 23 27 27 F 1.39899 * 109.47429 * 239.97670 * 25 24 23 28 28 C 1.38322 * 120.11494 * 359.97438 * 24 23 22 29 29 F 1.35102 * 120.10539 * 179.97438 * 28 24 23 30 30 H 1.08995 * 109.46848 * 295.52679 * 1 2 3 31 31 H 1.08998 * 109.46763 * 55.52986 * 1 2 3 32 32 H 1.09003 * 109.46840 * 175.52624 * 1 2 3 33 33 H 0.97001 * 119.99976 * 276.32934 * 6 4 2 34 34 H 0.97006 * 119.99637 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00281 * 277.23664 * 15 4 2 36 36 H 1.08996 * 111.00198 * 153.37866 * 15 4 2 37 37 H 1.08992 * 110.37097 * 204.15411 * 16 15 4 38 38 H 1.08996 * 110.36511 * 81.82388 * 16 15 4 39 39 H 1.08004 * 120.05547 * 359.69749 * 21 20 18 40 40 H 1.07999 * 119.88981 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.83077 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47519 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 2.3598 -0.0450 -2.0192 6 7 1.0483 -1.6788 -1.7532 7 6 0.2263 -1.3013 -2.7813 8 1 0.3223 -0.3174 -3.2160 9 6 -0.7305 -2.1833 -3.2647 10 7 -0.8478 -3.3823 -2.7344 11 14 -1.8513 -1.6686 -4.6675 12 1 -1.5188 -0.2825 -5.0838 13 1 -1.6605 -2.5894 -5.8169 14 1 -3.2654 -1.7251 -4.2176 15 6 3.2864 -1.5184 -0.6915 16 6 2.8100 -1.8825 0.7369 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.0860 0.5829 2.7200 20 6 2.4399 -1.1242 3.5613 21 6 2.6113 -2.5055 3.4475 22 6 3.2029 -3.2110 4.4736 23 6 3.6280 -2.5544 5.6161 24 6 3.4629 -1.1877 5.7382 25 6 3.9294 -0.4822 6.9854 26 9 4.8900 0.4770 6.6469 27 9 2.8411 0.1449 7.6014 28 6 2.8711 -0.4662 4.7172 29 9 2.7093 0.8698 4.8370 30 1 -0.3633 0.4428 0.9273 31 1 -0.3633 0.5816 -0.8472 32 1 -0.3633 -1.0246 -0.0802 33 1 0.9622 -2.5627 -1.3630 34 1 -1.5161 -3.9988 -3.0725 35 1 4.1670 -0.8768 -0.6580 36 1 3.4807 -2.4155 -1.2792 37 1 3.6656 -2.0411 1.3932 38 1 2.1802 -2.7717 0.7115 39 1 2.2769 -3.0208 2.5592 40 1 3.3351 -4.2792 4.3860 41 1 4.0910 -3.1132 6.4160 42 1 4.3665 -1.2078 7.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986300258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:59 Heat of formation + Delta-G solvation = -125.956783 kcal Electronic energy + Delta-G solvation = -30436.209527 eV Core-core repulsion = 25774.259884 eV Total energy + Delta-G solvation = -4661.949643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -49.53453 -48.85143 -47.26953 -40.42644 -38.94083 -37.36953 -34.18437 -32.88622 -31.51522 -31.05823 -30.66222 -28.79275 -26.57907 -25.38239 -24.55891 -23.45820 -22.36637 -22.13527 -20.30879 -18.95259 -18.05522 -17.77911 -17.54618 -17.51676 -17.37697 -16.37038 -16.29675 -15.97572 -15.64914 -15.24997 -14.71470 -14.63702 -14.14540 -13.92199 -13.69017 -13.62828 -13.59367 -13.53915 -13.30811 -12.91863 -12.86002 -12.71821 -12.53071 -12.25654 -12.13560 -11.59353 -11.42305 -11.30124 -10.95212 -10.91328 -10.67853 -10.52402 -10.18904 -10.07548 -9.79818 -9.61990 -9.55323 -9.16114 -9.01650 -8.33638 -7.09745 -5.87514 -3.16923 0.37642 0.59896 2.62423 3.00229 3.28739 3.31062 3.38176 3.45179 3.46427 3.65005 3.81779 4.09731 4.32772 4.50678 4.51219 4.61377 4.64841 4.78804 4.89648 5.05451 5.21427 5.33024 5.44383 5.50885 5.53771 5.60385 5.67736 5.69975 5.78244 5.82297 6.02979 6.16357 6.21095 6.26912 6.38345 6.49289 6.61648 6.82018 6.98038 7.34412 7.62870 7.75136 8.29291 8.31535 9.42472 9.94786 10.30167 11.34555 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.002701 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.891808 B =10362.168947 C =10682.037696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.109 3.891 3 H 0.062 0.938 4 C 0.170 3.830 5 H 0.077 0.923 6 N -0.708 5.708 7 C -0.240 4.240 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.146 4.146 16 C 0.095 3.905 17 N -0.595 5.595 18 C 0.567 3.433 19 O -0.525 6.525 20 C -0.159 4.159 21 C -0.042 4.042 22 C -0.139 4.139 23 C -0.040 4.040 24 C -0.223 4.223 25 C 0.319 3.681 26 F -0.196 7.196 27 F -0.195 7.195 28 C 0.189 3.811 29 F -0.109 7.109 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -1.785 17.725 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.004 3.996 3 H 0.080 0.920 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.347 5.347 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.185 4.185 16 C -0.027 4.027 17 N -0.328 5.328 18 C 0.354 3.646 19 O -0.403 6.403 20 C -0.164 4.164 21 C -0.061 4.061 22 C -0.157 4.157 23 C -0.058 4.058 24 C -0.224 4.224 25 C 0.265 3.735 26 F -0.177 7.177 27 F -0.176 7.176 28 C 0.169 3.831 29 F -0.086 7.086 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.426 -1.071 17.750 22.281 hybrid contribution -0.798 0.212 -0.559 0.997 sum 12.629 -0.859 17.191 21.348 Atomic orbital electron populations 1.21833 0.93532 1.03934 1.00372 1.22808 0.96419 0.95453 0.84928 0.92040 1.21260 0.88435 0.92292 0.92248 0.90512 1.42342 1.38013 1.14454 1.39865 1.19243 1.10487 0.98777 1.08557 0.90958 1.24721 0.99700 0.96175 0.99911 1.69659 1.37319 1.06651 1.44171 0.86148 0.80677 0.77645 0.81889 1.20486 1.21886 1.21850 1.23183 0.98715 1.01964 0.94653 1.22569 0.94694 0.89010 0.96464 1.48483 1.51416 1.28170 1.04698 1.17515 0.81654 0.83983 0.81433 1.90821 1.37364 1.29071 1.83016 1.20163 1.05479 0.95259 0.95456 1.21785 0.93071 0.91855 0.99368 1.21174 1.00295 1.01060 0.93185 1.20988 0.95366 0.91381 0.98096 1.20434 1.09019 0.96030 0.96965 1.20268 0.77100 0.85154 0.90943 1.93045 1.63879 1.67232 1.93556 1.93054 1.56196 1.84627 1.83714 1.17384 0.94952 0.78015 0.92787 1.91625 1.92341 1.28971 1.95705 0.93794 0.91959 0.90671 0.78104 0.93488 0.90906 0.89274 0.91143 0.90796 0.83068 0.83749 0.83849 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.20 37.16 0.30 -2.57 16 2 C 0.11 1.99 3.46 -66.94 -0.23 1.75 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.17 3.04 3.53 -66.09 -0.23 2.81 16 5 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 6 N -0.71 -15.72 3.64 -51.65 -0.19 -15.91 16 7 C -0.24 -6.08 8.81 -15.06 -0.13 -6.22 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 11 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.15 -2.02 6.70 -24.58 -0.16 -2.18 16 16 C 0.10 1.25 5.06 -2.52 -0.01 1.24 16 17 N -0.59 -9.75 3.06 -164.16 -0.50 -10.25 16 18 C 0.57 9.98 7.25 -12.40 -0.09 9.89 16 19 O -0.53 -11.24 14.95 5.30 0.08 -11.16 16 20 C -0.16 -2.23 5.53 -104.91 -0.58 -2.81 16 21 C -0.04 -0.44 7.90 -39.19 -0.31 -0.74 16 22 C -0.14 -1.00 10.03 -39.64 -0.40 -1.40 16 23 C -0.04 -0.27 9.66 -39.51 -0.38 -0.65 16 24 C -0.22 -2.25 5.37 -104.60 -0.56 -2.81 16 25 C 0.32 2.87 5.16 36.00 0.19 3.05 16 26 F -0.20 -2.21 17.07 2.25 0.04 -2.17 16 27 F -0.19 -2.28 17.07 2.25 0.04 -2.24 16 28 C 0.19 2.65 7.07 -38.96 -0.28 2.37 16 29 F -0.11 -1.83 15.32 2.25 0.03 -1.80 16 30 H 0.04 0.93 6.63 -51.93 -0.34 0.59 16 31 H 0.06 1.32 7.83 -51.93 -0.41 0.91 16 32 H 0.07 1.74 7.06 -51.93 -0.37 1.37 16 33 H 0.38 9.09 7.85 -40.82 -0.32 8.77 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 38 H 0.07 0.98 7.23 -51.93 -0.38 0.60 16 39 H 0.15 1.45 5.43 -52.48 -0.29 1.16 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.14 0.40 7.94 -52.49 -0.42 -0.02 16 42 H 0.13 0.50 7.87 -51.93 -0.41 0.09 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -32.81 355.37 -7.34 -40.15 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.92 Total: 5.74 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.98 Total: 1.39 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.03 Total: -51.77 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.81 -7.34 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986300258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.809 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds