Wall clock time and date at job start Wed Apr 1 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99655 * 2 1 4 4 C 1.54338 * 109.98965 * 238.96322 * 2 1 3 5 5 H 1.09000 * 110.85220 * 100.20009 * 4 2 1 6 6 N 1.46495 * 110.67068 * 337.04678 * 4 2 1 7 7 C 1.36937 * 120.00037 * 96.32246 * 6 4 2 8 8 H 1.07996 * 119.99867 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00099 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99686 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00104 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47280 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46864 * 119.99967 * 11 9 7 14 14 H 1.48497 * 109.47246 * 239.99665 * 11 9 7 15 15 C 1.55161 * 103.02042 * 218.66302 * 4 2 1 16 16 C 1.54916 * 101.58159 * 35.30620 * 15 4 2 17 17 N 1.47024 * 109.88349 * 121.09551 * 2 1 3 18 18 C 1.34770 * 125.64841 * 298.39402 * 17 2 1 19 19 O 1.21577 * 120.00018 * 3.74304 * 18 17 2 20 20 C 1.47690 * 120.00066 * 183.74189 * 18 17 2 21 21 C 1.39657 * 120.16891 * 324.21273 * 20 18 17 22 22 C 1.37856 * 119.88049 * 179.97438 * 21 20 18 23 23 C 1.38456 * 120.21765 * 359.97438 * 22 21 20 24 24 C 1.38209 * 120.34068 * 0.02562 * 23 22 21 25 25 C 1.50695 * 119.93980 * 180.02562 * 24 23 22 26 26 F 1.39902 * 109.46872 * 119.98053 * 25 24 23 27 27 F 1.39899 * 109.47429 * 239.97670 * 25 24 23 28 28 C 1.38322 * 120.11494 * 359.97438 * 24 23 22 29 29 F 1.35102 * 120.10539 * 179.97438 * 28 24 23 30 30 H 1.08995 * 109.46848 * 295.52679 * 1 2 3 31 31 H 1.08998 * 109.46763 * 55.52986 * 1 2 3 32 32 H 1.09003 * 109.46840 * 175.52624 * 1 2 3 33 33 H 0.97001 * 119.99976 * 276.32934 * 6 4 2 34 34 H 0.97006 * 119.99637 * 180.02562 * 10 9 7 35 35 H 1.09000 * 111.00281 * 277.23664 * 15 4 2 36 36 H 1.08996 * 111.00198 * 153.37866 * 15 4 2 37 37 H 1.08992 * 110.37097 * 204.15411 * 16 15 4 38 38 H 1.08996 * 110.36511 * 81.82388 * 16 15 4 39 39 H 1.08004 * 120.05547 * 359.69749 * 21 20 18 40 40 H 1.07999 * 119.88981 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.83077 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47519 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 2.3598 -0.0450 -2.0192 6 7 1.0483 -1.6788 -1.7532 7 6 0.2263 -1.3013 -2.7813 8 1 0.3223 -0.3174 -3.2160 9 6 -0.7305 -2.1833 -3.2647 10 7 -0.8478 -3.3823 -2.7344 11 14 -1.8513 -1.6686 -4.6675 12 1 -1.5188 -0.2825 -5.0838 13 1 -1.6605 -2.5894 -5.8169 14 1 -3.2654 -1.7251 -4.2176 15 6 3.2864 -1.5184 -0.6915 16 6 2.8100 -1.8825 0.7369 17 7 2.0301 -0.7141 1.1839 18 6 1.8075 -0.3620 2.4657 19 8 1.0860 0.5829 2.7200 20 6 2.4399 -1.1242 3.5613 21 6 2.6113 -2.5055 3.4475 22 6 3.2029 -3.2110 4.4736 23 6 3.6280 -2.5544 5.6161 24 6 3.4629 -1.1877 5.7382 25 6 3.9294 -0.4822 6.9854 26 9 4.8900 0.4770 6.6469 27 9 2.8411 0.1449 7.6014 28 6 2.8711 -0.4662 4.7172 29 9 2.7093 0.8698 4.8370 30 1 -0.3633 0.4428 0.9273 31 1 -0.3633 0.5816 -0.8472 32 1 -0.3633 -1.0246 -0.0802 33 1 0.9622 -2.5627 -1.3630 34 1 -1.5161 -3.9988 -3.0725 35 1 4.1670 -0.8768 -0.6580 36 1 3.4807 -2.4155 -1.2792 37 1 3.6656 -2.0411 1.3932 38 1 2.1802 -2.7717 0.7115 39 1 2.2769 -3.0208 2.5592 40 1 3.3351 -4.2792 4.3860 41 1 4.0910 -3.1132 6.4160 42 1 4.3665 -1.2078 7.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986300258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:58 Heat of formation + Delta-G solvation = -146.592307 kcal Electronic energy + Delta-G solvation = -30437.104350 eV Core-core repulsion = 25774.259884 eV Total energy + Delta-G solvation = -4662.844466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.43648 -49.75656 -48.04060 -41.62656 -39.89441 -38.76480 -35.85389 -34.00638 -32.93668 -32.18478 -31.85825 -30.39426 -27.36700 -26.84567 -25.66423 -25.24234 -23.41600 -23.00023 -21.56046 -20.28259 -19.41579 -18.87258 -18.61754 -18.35116 -18.30578 -17.65148 -17.26595 -17.07385 -16.77960 -16.39595 -16.10121 -15.76622 -15.48527 -15.32367 -15.08755 -14.93900 -14.54373 -14.47376 -14.41745 -14.31850 -14.09289 -13.79109 -13.44514 -13.17115 -13.10304 -13.04081 -12.96217 -12.84536 -12.47785 -12.33068 -12.15418 -12.05306 -11.79531 -11.69872 -11.53930 -11.07682 -10.91538 -10.37988 -9.99961 -9.67948 -9.00092 -7.92423 -5.18876 -0.40224 -0.19357 1.47177 1.50154 1.55468 1.57252 1.83450 2.37610 2.57011 2.61509 2.91936 3.16919 3.19718 3.40636 3.59836 3.64062 3.80901 3.87957 3.96119 3.97872 4.02829 4.18041 4.22424 4.36133 4.43611 4.50327 4.54706 4.68821 4.75250 4.78370 4.82687 4.97418 5.03514 5.08857 5.14932 5.22192 5.26638 5.41522 5.50683 5.58931 5.61187 6.29529 6.45333 6.98271 7.38318 8.09163 8.34329 9.30374 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.002701 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.891808 B =10362.168947 C =10682.037696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.112 3.888 3 H 0.061 0.939 4 C 0.165 3.835 5 H 0.079 0.921 6 N -0.713 5.713 7 C -0.226 4.226 8 H 0.074 0.926 9 C -0.067 4.067 10 N -0.963 5.963 11 Si 0.958 3.042 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.302 1.302 15 C -0.131 4.131 16 C 0.096 3.904 17 N -0.595 5.595 18 C 0.558 3.442 19 O -0.581 6.581 20 C -0.186 4.186 21 C -0.046 4.046 22 C -0.119 4.119 23 C -0.014 4.014 24 C -0.225 4.225 25 C 0.308 3.692 26 F -0.214 7.214 27 F -0.217 7.217 28 C 0.147 3.853 29 F -0.141 7.141 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.190 0.810 41 H 0.201 0.799 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.844 -4.255 19.350 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 H 0.079 0.921 4 C 0.054 3.946 5 H 0.097 0.903 6 N -0.351 5.351 7 C -0.358 4.358 8 H 0.092 0.908 9 C -0.260 4.260 10 N -0.613 5.613 11 Si 0.789 3.211 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.230 1.230 15 C -0.170 4.170 16 C -0.025 4.025 17 N -0.326 5.326 18 C 0.348 3.652 19 O -0.462 6.462 20 C -0.190 4.190 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.031 4.031 24 C -0.227 4.227 25 C 0.255 3.745 26 F -0.196 7.196 27 F -0.198 7.198 28 C 0.127 3.873 29 F -0.119 7.119 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.174 0.826 40 H 0.207 0.793 41 H 0.218 0.782 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 16.371 -3.528 19.370 25.605 hybrid contribution -1.635 0.974 -0.971 2.136 sum 14.736 -2.554 18.399 23.710 Atomic orbital electron populations 1.21630 0.95817 1.01625 0.99066 1.22575 0.94443 0.95978 0.86388 0.92108 1.21442 0.89078 0.92214 0.91894 0.90267 1.42404 1.38671 1.14754 1.39285 1.19520 1.09856 0.98305 1.08140 0.90829 1.25333 1.01601 0.96606 1.02431 1.69775 1.38235 1.07561 1.45763 0.85291 0.78551 0.77657 0.79587 1.19396 1.22121 1.22960 1.23119 0.97362 1.02050 0.94465 1.22773 0.95464 0.87581 0.96691 1.48514 1.51325 1.28786 1.04012 1.18234 0.80953 0.83595 0.82406 1.90772 1.39833 1.31664 1.83931 1.19947 1.07834 0.96622 0.94549 1.21949 0.93455 0.90109 1.00934 1.21716 0.97429 1.02868 0.91656 1.21676 0.92686 0.89740 0.99033 1.20809 1.08223 0.97453 0.96215 1.21082 0.76368 0.85433 0.91602 1.93005 1.64440 1.68294 1.93822 1.93008 1.57557 1.85234 1.84006 1.17944 0.97617 0.77219 0.94544 1.91532 1.93024 1.31402 1.95990 0.95213 0.93058 0.93261 0.78973 0.94225 0.88305 0.88520 0.87578 0.90704 0.82629 0.79327 0.78157 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.20 71.98 0.59 -4.79 16 2 C 0.11 4.17 3.46 45.35 0.16 4.33 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.16 5.79 3.53 46.19 0.16 5.95 16 5 H 0.08 2.76 8.06 -2.39 -0.02 2.74 16 6 N -0.71 -31.80 3.64 -317.31 -1.16 -32.96 16 7 C -0.23 -11.57 8.81 84.03 0.74 -10.83 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 10 N -0.96 -55.53 13.06 21.65 0.28 -55.25 16 11 Si 0.96 44.95 29.55 68.60 2.03 46.98 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 15 C -0.13 -3.32 6.70 31.99 0.21 -3.10 16 16 C 0.10 2.34 5.06 86.86 0.44 2.78 16 17 N -0.59 -19.62 3.06 -791.56 -2.43 -22.05 16 18 C 0.56 20.43 7.25 86.74 0.63 21.06 16 19 O -0.58 -26.69 14.95 -3.96 -0.06 -26.75 16 20 C -0.19 -5.15 5.53 -20.05 -0.11 -5.26 16 21 C -0.05 -0.82 7.90 22.52 0.18 -0.64 16 22 C -0.12 -1.04 10.03 22.23 0.22 -0.82 16 23 C -0.01 -0.10 9.66 22.31 0.22 0.11 16 24 C -0.23 -3.92 5.37 -19.85 -0.11 -4.03 16 25 C 0.31 4.68 5.16 71.23 0.37 5.05 16 26 F -0.21 -4.58 17.07 44.97 0.77 -3.81 16 27 F -0.22 -4.90 17.07 44.97 0.77 -4.13 16 28 C 0.15 4.12 7.07 22.67 0.16 4.28 16 29 F -0.14 -5.11 15.32 44.97 0.69 -4.42 16 30 H 0.03 1.34 6.63 -2.39 -0.02 1.33 16 31 H 0.05 2.28 7.83 -2.39 -0.02 2.26 16 32 H 0.05 2.38 7.06 -2.39 -0.02 2.36 16 33 H 0.38 17.97 7.85 -92.71 -0.73 17.24 16 34 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.11 1.87 6.59 -2.39 -0.02 1.86 16 38 H 0.07 1.84 7.23 -2.39 -0.02 1.83 16 39 H 0.16 2.55 5.43 -2.91 -0.02 2.54 16 40 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 41 H 0.20 -0.69 7.94 -2.91 -0.02 -0.71 16 42 H 0.19 0.41 7.87 -2.39 -0.02 0.39 16 Total: -1.00 -79.65 355.37 5.58 -74.07 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.36 Total: 17.37 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 4.33 Total: 10.93 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -3.30 Total: -110.25 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.75 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 2.22 Total: -12.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -79.65 5.58 -74.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986300258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.517 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds