Wall clock time and date at job start Wed Apr 1 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.99489 * 2 1 4 4 C 1.54314 * 109.77592 * 121.15304 * 2 1 3 5 5 H 1.08997 * 110.92477 * 23.47504 * 4 2 1 6 6 N 1.46498 * 110.59005 * 260.14591 * 4 2 1 7 7 C 1.36936 * 120.00103 * 160.19424 * 6 4 2 8 8 H 1.07999 * 119.99893 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00361 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99775 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46868 * 59.99765 * 11 9 7 13 13 H 1.48501 * 109.47359 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46964 * 299.99838 * 11 9 7 15 15 C 1.55157 * 102.86161 * 141.88927 * 4 2 1 16 16 C 1.54909 * 101.58023 * 324.30262 * 15 4 2 17 17 N 1.47023 * 109.88315 * 238.90686 * 2 1 3 18 18 C 1.34771 * 125.65255 * 61.67431 * 17 2 1 19 19 O 1.21566 * 120.00287 * 182.98230 * 18 17 2 20 20 C 1.47699 * 119.99614 * 2.98176 * 18 17 2 21 21 C 1.39654 * 120.17016 * 4.13972 * 20 18 17 22 22 C 1.37856 * 119.88172 * 179.97438 * 21 20 18 23 23 C 1.38458 * 120.21602 * 0.02562 * 22 21 20 24 24 C 1.38209 * 120.33956 * 0.02562 * 23 22 21 25 25 C 1.50701 * 119.93762 * 179.97438 * 24 23 22 26 26 F 1.39902 * 109.46984 * 119.99974 * 25 24 23 27 27 F 1.39899 * 109.47088 * 239.99331 * 25 24 23 28 28 C 1.38314 * 120.11669 * 359.97082 * 24 23 22 29 29 F 1.35100 * 120.11038 * 180.02562 * 28 24 23 30 30 H 1.09003 * 109.46730 * 196.94983 * 1 2 3 31 31 H 1.09000 * 109.47079 * 316.94718 * 1 2 3 32 32 H 1.08999 * 109.46979 * 76.95614 * 1 2 3 33 33 H 0.97004 * 120.00355 * 340.19891 * 6 4 2 34 34 H 0.97006 * 119.99710 * 179.97438 * 10 9 7 35 35 H 1.09003 * 111.00338 * 206.22824 * 15 4 2 36 36 H 1.09002 * 111.03751 * 82.39039 * 15 4 2 37 37 H 1.09001 * 110.36510 * 278.17150 * 16 15 4 38 38 H 1.09005 * 110.36226 * 155.85212 * 16 15 4 39 39 H 1.08004 * 120.05615 * 359.97438 * 21 20 18 40 40 H 1.07995 * 119.89415 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.82896 * 180.27373 * 23 22 21 42 42 H 1.08997 * 109.47680 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7512 1.2427 5 1 1.3051 -1.4512 1.6168 6 7 2.4473 0.1954 2.2887 7 6 2.5497 -0.2237 3.5883 8 1 2.3387 -1.2520 3.8423 9 6 2.9236 0.6732 4.5794 10 7 3.1793 1.9268 4.2701 11 14 3.0625 0.1017 6.3524 12 1 4.0762 -0.9795 6.4459 13 1 3.4753 1.2421 7.2093 14 1 1.7470 -0.4122 6.8114 15 6 3.2890 -1.5100 0.6933 16 6 2.8192 -1.8762 -0.7367 17 7 2.0301 -0.7140 -1.1840 18 6 1.8086 -0.3613 -2.4657 19 8 2.2273 -1.0586 -3.3691 20 6 1.0571 0.8726 -2.7727 21 6 0.6492 1.7210 -1.7411 22 6 -0.0514 2.8714 -2.0344 23 6 -0.3525 3.1880 -3.3483 24 6 0.0458 2.3544 -4.3762 25 6 -0.2873 2.7075 -5.8029 26 9 0.8954 2.8449 -6.5375 27 9 -1.0694 1.6923 -6.3641 28 6 0.7495 1.1966 -4.0977 29 9 1.1392 0.3821 -5.1026 30 1 -0.3633 -0.9831 0.2996 31 1 -0.3633 0.7509 0.7016 32 1 -0.3633 0.2319 -1.0011 33 1 2.6364 1.1191 2.0607 34 1 3.4402 2.5537 4.9629 35 1 3.4899 -2.4063 1.2801 36 1 4.1643 -0.8612 0.6628 37 1 2.1973 -2.7711 -0.7142 38 1 3.6778 -2.0263 -1.3912 39 1 0.8824 1.4762 -0.7153 40 1 -0.3665 3.5279 -1.2369 41 1 -0.8979 4.0931 -3.5713 42 1 -0.8405 3.6463 -5.8252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986300264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:10 Heat of formation + Delta-G solvation = -94.213129 kcal Electronic energy + Delta-G solvation = -30481.821795 eV Core-core repulsion = 25821.248660 eV Total energy + Delta-G solvation = -4660.573135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.48158 -48.79029 -47.22887 -40.91280 -38.78364 -37.64901 -34.36259 -33.45907 -31.64288 -31.08617 -30.82621 -29.19048 -26.40171 -25.55755 -24.53436 -23.27330 -22.31945 -22.20194 -20.49487 -19.62848 -18.00358 -17.95946 -17.57780 -17.50839 -17.18205 -16.38053 -16.21208 -15.92829 -15.63801 -15.45824 -15.03483 -14.70378 -14.10880 -14.10694 -14.01771 -13.59050 -13.57457 -13.28714 -13.21889 -13.06397 -12.95361 -12.59254 -12.47622 -12.26433 -12.16682 -11.74021 -11.65253 -11.38409 -11.21922 -11.03193 -10.90968 -10.73675 -10.37425 -10.21284 -9.91299 -9.78013 -9.40586 -9.11782 -9.04473 -8.55035 -7.16912 -5.93442 -3.24445 0.37611 0.67264 2.60114 2.87925 3.32136 3.34617 3.39707 3.40306 3.40554 3.69861 3.85827 4.10113 4.31097 4.44651 4.58037 4.60401 4.69576 4.78795 4.88136 4.97440 5.07777 5.28298 5.30989 5.37092 5.46494 5.53259 5.58850 5.62942 5.71012 5.75538 5.83845 5.95957 6.04631 6.10228 6.13653 6.28947 6.32799 6.41063 6.51639 6.78672 7.53003 7.56214 8.14133 8.23491 9.35651 9.86738 10.21588 11.28462 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020541 B = 0.002819 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.777204 B = 9931.074076 C =10805.780592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.093 0.907 4 C 0.179 3.821 5 H 0.070 0.930 6 N -0.715 5.715 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.007 4.007 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.108 3.892 17 N -0.600 5.600 18 C 0.572 3.428 19 O -0.532 6.532 20 C -0.177 4.177 21 C -0.068 4.068 22 C -0.148 4.148 23 C -0.032 4.032 24 C -0.233 4.233 25 C 0.320 3.680 26 F -0.196 7.196 27 F -0.196 7.196 28 C 0.197 3.803 29 F -0.105 7.105 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.258 0.742 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.190 0.810 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 3.374 -14.919 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.002 4.002 3 H 0.110 0.890 4 C 0.067 3.933 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.211 1.211 15 C -0.198 4.198 16 C -0.015 4.015 17 N -0.333 5.333 18 C 0.361 3.639 19 O -0.410 6.410 20 C -0.181 4.181 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.050 4.050 24 C -0.235 4.235 25 C 0.266 3.734 26 F -0.177 7.177 27 F -0.178 7.178 28 C 0.176 3.824 29 F -0.082 7.082 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.219 0.781 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.969 2.886 -15.364 18.023 hybrid contribution 0.308 -0.121 0.647 0.727 sum -8.661 2.765 -14.717 17.298 Atomic orbital electron populations 1.22724 0.94466 1.03978 1.02287 1.22412 0.94384 0.97015 0.86364 0.88968 1.21285 0.93926 0.91544 0.86505 0.91226 1.42316 1.81351 1.08758 1.03116 1.19136 1.39842 0.95119 0.83647 0.90959 1.24749 1.01805 0.95610 0.98200 1.69639 1.52460 1.02846 1.32796 0.86256 0.77899 0.77371 0.84555 1.21149 1.21645 1.21132 1.23611 1.01169 1.01970 0.93015 1.22321 0.94946 0.87748 0.96453 1.48364 1.51751 1.28920 1.04292 1.17510 0.80129 0.84497 0.81721 1.90830 1.51913 1.53579 1.44655 1.20022 1.06537 0.99178 0.92326 1.23448 0.91123 0.91407 1.02520 1.21258 1.00863 0.97883 0.96549 1.21059 0.94854 0.97341 0.91749 1.20402 1.08453 0.98276 0.96334 1.20256 0.78761 0.90636 0.83735 1.93046 1.49458 1.96273 1.78922 1.93041 1.74551 1.63652 1.86520 1.17426 0.92989 0.87605 0.84337 1.91633 1.87713 1.70721 1.58161 0.91441 0.90024 0.91732 0.78059 0.93243 0.90216 0.90488 0.91526 0.90798 0.79371 0.83605 0.83899 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 7.79 37.16 0.29 -1.87 16 2 C 0.10 1.46 2.45 -66.96 -0.16 1.30 16 3 H 0.09 1.33 5.66 -51.93 -0.29 1.04 16 4 C 0.18 3.04 3.11 -66.10 -0.21 2.83 16 5 H 0.07 1.18 7.57 -51.93 -0.39 0.79 16 6 N -0.71 -15.50 5.25 -51.66 -0.27 -15.78 16 7 C -0.25 -6.14 9.98 -15.06 -0.15 -6.29 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 10 N -0.93 -25.79 13.06 55.49 0.72 -25.07 16 11 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C -0.16 -2.48 6.76 -24.58 -0.17 -2.64 16 16 C 0.11 1.58 6.89 -2.53 -0.02 1.56 16 17 N -0.60 -9.16 3.07 -167.87 -0.51 -9.68 16 18 C 0.57 9.60 7.58 -12.40 -0.09 9.51 16 19 O -0.53 -10.61 15.63 5.31 0.08 -10.53 16 20 C -0.18 -2.52 5.33 -104.91 -0.56 -3.08 16 21 C -0.07 -0.78 6.45 -39.19 -0.25 -1.03 16 22 C -0.15 -1.28 10.03 -39.64 -0.40 -1.68 16 23 C -0.03 -0.25 9.66 -39.51 -0.38 -0.63 16 24 C -0.23 -2.51 5.37 -104.60 -0.56 -3.07 16 25 C 0.32 3.04 5.16 36.01 0.19 3.22 16 26 F -0.20 -2.35 17.07 2.25 0.04 -2.31 16 27 F -0.20 -2.31 17.07 2.25 0.04 -2.27 16 28 C 0.20 2.83 7.11 -38.96 -0.28 2.56 16 29 F -0.10 -1.78 14.75 2.25 0.03 -1.75 16 30 H 0.07 0.83 7.71 -51.93 -0.40 0.42 16 31 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.06 0.75 4.75 -51.93 -0.25 0.50 16 33 H 0.38 8.86 7.50 -40.82 -0.31 8.56 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 39 H 0.19 2.18 2.04 -57.47 -0.12 2.07 16 40 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.14 0.55 7.94 -52.49 -0.42 0.13 16 42 H 0.13 0.58 7.87 -51.93 -0.41 0.17 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -31.70 351.80 -7.10 -38.80 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.66 Total: 7.04 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.85 Total: 0.40 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.06 Total: -50.52 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.70 -7.10 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986300264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.410 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds