Wall clock time and date at job start Wed Apr 1 2020 02:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99801 * 2 1 4 4 C 1.54336 * 109.98940 * 238.96161 * 2 1 3 5 5 H 1.09001 * 110.51411 * 336.97822 * 4 2 1 6 6 N 1.46502 * 110.84925 * 100.19736 * 4 2 1 7 7 C 1.36939 * 120.00041 * 200.14981 * 6 4 2 8 8 H 1.08003 * 120.00044 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00281 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99730 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00212 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46942 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46847 * 119.99511 * 11 9 7 14 14 H 1.48498 * 109.47039 * 239.99727 * 11 9 7 15 15 C 1.55152 * 103.02233 * 218.66670 * 4 2 1 16 16 C 1.54913 * 101.58116 * 35.30468 * 15 4 2 17 17 N 1.47022 * 109.88348 * 121.09514 * 2 1 3 18 18 C 1.34767 * 125.65126 * 298.39605 * 17 2 1 19 19 O 1.21575 * 120.00022 * 3.74757 * 18 17 2 20 20 C 1.47690 * 120.00512 * 183.75396 * 18 17 2 21 21 C 1.39667 * 120.16304 * 324.18845 * 20 18 17 22 22 C 1.37853 * 119.88004 * 180.02562 * 21 20 18 23 23 C 1.50693 * 119.89491 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46862 * 299.99818 * 23 22 21 25 25 F 1.39899 * 109.47170 * 59.99445 * 23 22 21 26 26 C 1.38461 * 120.21519 * 0.25281 * 22 21 20 27 27 C 1.38203 * 120.34184 * 359.48803 * 26 22 21 28 28 C 1.38325 * 120.11470 * 0.51085 * 27 26 22 29 29 F 1.35106 * 120.10850 * 179.72093 * 28 27 26 30 30 H 1.09009 * 109.46879 * 300.35949 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.35839 * 1 2 3 32 32 H 1.08997 * 109.47520 * 180.35853 * 1 2 3 33 33 H 0.96997 * 120.00473 * 20.14873 * 6 4 2 34 34 H 0.97004 * 120.00356 * 180.02562 * 10 9 7 35 35 H 1.08998 * 111.00440 * 277.23075 * 15 4 2 36 36 H 1.08998 * 111.03526 * 153.39731 * 15 4 2 37 37 H 1.09000 * 110.36561 * 204.15261 * 16 15 4 38 38 H 1.08999 * 110.36402 * 81.83135 * 16 15 4 39 39 H 1.08000 * 120.05943 * 0.04570 * 21 20 18 40 40 H 1.09000 * 109.47416 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.82956 * 179.72374 * 26 22 21 42 42 H 1.08003 * 119.94340 * 180.23493 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6196 6 7 2.4636 0.1968 -2.2863 7 6 2.5653 -0.2213 -3.5864 8 1 2.3465 -1.2475 -3.8423 9 6 2.9505 0.6735 -4.5752 10 7 3.2176 1.9240 -4.2632 11 14 3.0899 0.1030 -6.3485 12 1 2.7390 -1.3374 -6.4340 13 1 2.1595 0.8908 -7.1964 14 1 4.4823 0.3020 -6.8245 15 6 3.2863 -1.5184 -0.6916 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8075 -0.3621 2.4656 19 8 1.0859 0.5827 2.7200 20 6 2.4401 -1.1240 3.5613 21 6 2.6113 -2.5055 3.4477 22 6 3.2021 -3.2110 4.4741 23 6 3.3864 -4.7016 4.3522 24 9 2.1388 -5.3144 4.1934 25 9 4.1888 -4.9829 3.2412 26 6 3.6214 -2.5553 5.6193 27 6 3.4612 -1.1878 5.7391 28 6 2.8702 -0.4662 4.7176 29 9 2.7086 0.8698 4.8372 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.6604 1.1183 -2.0565 34 1 3.4864 2.5495 -4.9542 35 1 4.1669 -0.8770 -0.6581 36 1 3.4812 -2.4156 -1.2790 37 1 3.6655 -2.0412 1.3932 38 1 2.1801 -2.7718 0.7115 39 1 2.2818 -3.0200 2.5572 40 1 3.8670 -5.0833 5.2530 41 1 4.0794 -3.1149 6.4215 42 1 3.7941 -0.6824 6.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986301964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:28 Heat of formation + Delta-G solvation = -131.565863 kcal Electronic energy + Delta-G solvation = -30154.040985 eV Core-core repulsion = 25491.848114 eV Total energy + Delta-G solvation = -4662.192871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.36139 -49.21226 -47.34217 -40.54704 -39.02856 -37.39990 -34.24670 -32.61492 -32.11664 -31.21545 -30.79703 -29.06154 -26.41375 -25.33555 -24.76528 -23.36492 -22.61294 -22.00064 -20.31570 -19.46002 -18.07927 -17.82586 -17.61901 -17.57030 -17.28492 -16.67342 -16.41240 -16.18235 -15.78521 -14.96589 -14.65595 -14.49873 -14.27618 -14.20707 -13.96186 -13.71531 -13.70452 -13.60350 -13.43539 -13.05513 -12.85823 -12.75026 -12.70151 -12.22132 -11.95529 -11.89029 -11.63167 -11.47685 -11.19639 -11.06117 -10.86300 -10.61971 -10.28757 -10.08029 -9.85431 -9.71326 -9.60586 -9.33622 -8.97561 -8.51489 -7.06006 -5.83710 -3.14488 0.26067 0.52045 2.47548 2.87100 3.13770 3.24540 3.39809 3.45588 3.47878 3.68144 3.72900 3.94200 4.24211 4.29001 4.51087 4.53241 4.60807 4.75997 4.93965 5.05066 5.16606 5.22951 5.29904 5.41389 5.45352 5.51191 5.54317 5.60707 5.65518 5.73502 5.88257 6.03730 6.09181 6.17632 6.25307 6.40693 6.54310 6.57728 6.65654 6.88202 7.58144 7.64502 8.13991 8.33329 9.45073 9.98854 10.33629 11.38463 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.003002 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.939775 B = 9326.210616 C =10502.367453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.090 3.910 17 N -0.599 5.599 18 C 0.570 3.430 19 O -0.524 6.524 20 C -0.160 4.160 21 C -0.024 4.024 22 C -0.194 4.194 23 C 0.317 3.683 24 F -0.197 7.197 25 F -0.195 7.195 26 C -0.037 4.037 27 C -0.164 4.164 28 C 0.175 3.825 29 F -0.113 7.113 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -13.516 22.987 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.033 4.033 17 N -0.332 5.332 18 C 0.357 3.643 19 O -0.401 6.401 20 C -0.164 4.164 21 C -0.042 4.042 22 C -0.195 4.195 23 C 0.263 3.737 24 F -0.179 7.179 25 F -0.176 7.176 26 C -0.055 4.055 27 C -0.183 4.183 28 C 0.154 3.846 29 F -0.091 7.091 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.346 -13.009 22.949 26.415 hybrid contribution 0.238 0.187 -0.979 1.025 sum 1.584 -12.822 21.970 25.488 Atomic orbital electron populations 1.22064 0.94573 1.01761 1.02949 1.21981 0.94639 0.96948 0.83975 0.90179 1.21245 0.93522 0.91621 0.87105 0.91594 1.42343 1.80702 1.09276 1.03156 1.19243 1.39153 0.95309 0.83772 0.90889 1.24770 1.02004 0.95643 0.98197 1.69675 1.52336 1.03138 1.32524 0.86108 0.77290 0.77722 0.84976 1.20461 1.21801 1.21820 1.23592 1.01495 1.01922 0.92614 1.22674 0.94758 0.88076 0.97752 1.48441 1.51669 1.28435 1.04643 1.17498 0.81602 0.83877 0.81314 1.90824 1.37463 1.28823 1.83029 1.20066 1.05834 0.94596 0.95864 1.21348 0.92515 0.92110 0.98275 1.20329 1.06716 0.95226 0.97209 1.20311 0.76568 0.88453 0.88324 1.93044 1.43943 1.84355 1.96515 1.93054 1.73354 1.94454 1.56771 1.20921 0.94989 0.93595 0.96003 1.21104 1.03219 0.94468 0.99528 1.17788 0.95419 0.78067 0.93287 1.91618 1.92466 1.29255 1.95760 0.91768 0.90953 0.93000 0.77956 0.93396 0.90453 0.90273 0.90931 0.91328 0.83267 0.86093 0.83715 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.10 37.16 0.34 -2.28 16 2 C 0.13 2.27 3.23 -66.95 -0.22 2.06 16 3 H 0.08 1.60 7.69 -51.93 -0.40 1.20 16 4 C 0.18 3.35 3.12 -66.09 -0.21 3.14 16 5 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 6 N -0.71 -17.19 5.25 -51.64 -0.27 -17.47 16 7 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 11 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 15 C -0.15 -2.52 6.77 -24.58 -0.17 -2.68 16 16 C 0.09 1.20 5.12 -2.53 -0.01 1.19 16 17 N -0.60 -9.45 3.06 -164.17 -0.50 -9.95 16 18 C 0.57 9.33 7.25 -12.40 -0.09 9.24 16 19 O -0.52 -10.29 15.02 5.30 0.08 -10.21 16 20 C -0.16 -2.06 5.53 -104.91 -0.58 -2.64 16 21 C -0.02 -0.25 7.45 -39.19 -0.29 -0.54 16 22 C -0.19 -1.50 5.37 -104.68 -0.56 -2.06 16 23 C 0.32 2.06 5.45 36.00 0.20 2.26 16 24 F -0.20 -1.72 17.25 2.25 0.04 -1.68 16 25 F -0.20 -1.71 17.25 2.25 0.04 -1.67 16 26 C -0.04 -0.21 9.66 -39.51 -0.38 -0.60 16 27 C -0.16 -1.26 10.01 -39.56 -0.40 -1.65 16 28 C 0.18 2.07 7.24 -38.96 -0.28 1.79 16 29 F -0.11 -1.61 16.13 2.25 0.04 -1.57 16 30 H 0.06 1.13 6.76 -51.92 -0.35 0.78 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.39 10.06 7.51 -40.82 -0.31 9.76 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 38 H 0.07 0.79 7.23 -51.93 -0.38 0.41 16 39 H 0.15 1.50 5.42 -52.49 -0.28 1.22 16 40 H 0.12 0.29 7.87 -51.93 -0.41 -0.12 16 41 H 0.15 0.27 7.94 -52.49 -0.42 -0.15 16 42 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -32.79 360.28 -7.30 -40.09 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.95 Total: 6.79 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.90 Total: 0.22 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.05 Total: -54.21 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.79 -7.30 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986301964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.478 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds