Wall clock time and date at job start Wed Apr 1 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99801 * 2 1 4 4 C 1.54336 * 109.98940 * 238.96161 * 2 1 3 5 5 H 1.09001 * 110.51411 * 336.97822 * 4 2 1 6 6 N 1.46502 * 110.84925 * 100.19736 * 4 2 1 7 7 C 1.36939 * 120.00041 * 200.14981 * 6 4 2 8 8 H 1.08003 * 120.00044 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00281 * 180.02562 * 7 6 4 10 10 N 1.31617 * 119.99730 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00212 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46942 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46847 * 119.99511 * 11 9 7 14 14 H 1.48498 * 109.47039 * 239.99727 * 11 9 7 15 15 C 1.55152 * 103.02233 * 218.66670 * 4 2 1 16 16 C 1.54913 * 101.58116 * 35.30468 * 15 4 2 17 17 N 1.47022 * 109.88348 * 121.09514 * 2 1 3 18 18 C 1.34767 * 125.65126 * 298.39605 * 17 2 1 19 19 O 1.21575 * 120.00022 * 3.74757 * 18 17 2 20 20 C 1.47690 * 120.00512 * 183.75396 * 18 17 2 21 21 C 1.39667 * 120.16304 * 324.18845 * 20 18 17 22 22 C 1.37853 * 119.88004 * 180.02562 * 21 20 18 23 23 C 1.50693 * 119.89491 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46862 * 299.99818 * 23 22 21 25 25 F 1.39899 * 109.47170 * 59.99445 * 23 22 21 26 26 C 1.38461 * 120.21519 * 0.25281 * 22 21 20 27 27 C 1.38203 * 120.34184 * 359.48803 * 26 22 21 28 28 C 1.38325 * 120.11470 * 0.51085 * 27 26 22 29 29 F 1.35106 * 120.10850 * 179.72093 * 28 27 26 30 30 H 1.09009 * 109.46879 * 300.35949 * 1 2 3 31 31 H 1.09002 * 109.47148 * 60.35839 * 1 2 3 32 32 H 1.08997 * 109.47520 * 180.35853 * 1 2 3 33 33 H 0.96997 * 120.00473 * 20.14873 * 6 4 2 34 34 H 0.97004 * 120.00356 * 180.02562 * 10 9 7 35 35 H 1.08998 * 111.00440 * 277.23075 * 15 4 2 36 36 H 1.08998 * 111.03526 * 153.39731 * 15 4 2 37 37 H 1.09000 * 110.36561 * 204.15261 * 16 15 4 38 38 H 1.08999 * 110.36402 * 81.83135 * 16 15 4 39 39 H 1.08000 * 120.05943 * 0.04570 * 21 20 18 40 40 H 1.09000 * 109.47416 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.82956 * 179.72374 * 26 22 21 42 42 H 1.08003 * 119.94340 * 180.23493 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3052 -1.4406 -1.6196 6 7 2.4636 0.1968 -2.2863 7 6 2.5653 -0.2213 -3.5864 8 1 2.3465 -1.2475 -3.8423 9 6 2.9505 0.6735 -4.5752 10 7 3.2176 1.9240 -4.2632 11 14 3.0899 0.1030 -6.3485 12 1 2.7390 -1.3374 -6.4340 13 1 2.1595 0.8908 -7.1964 14 1 4.4823 0.3020 -6.8245 15 6 3.2863 -1.5184 -0.6916 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8075 -0.3621 2.4656 19 8 1.0859 0.5827 2.7200 20 6 2.4401 -1.1240 3.5613 21 6 2.6113 -2.5055 3.4477 22 6 3.2021 -3.2110 4.4741 23 6 3.3864 -4.7016 4.3522 24 9 2.1388 -5.3144 4.1934 25 9 4.1888 -4.9829 3.2412 26 6 3.6214 -2.5553 5.6193 27 6 3.4612 -1.1878 5.7391 28 6 2.8702 -0.4662 4.7176 29 9 2.7086 0.8698 4.8372 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.6604 1.1183 -2.0565 34 1 3.4864 2.5495 -4.9542 35 1 4.1669 -0.8770 -0.6581 36 1 3.4812 -2.4156 -1.2790 37 1 3.6655 -2.0412 1.3932 38 1 2.1801 -2.7718 0.7115 39 1 2.2818 -3.0200 2.5572 40 1 3.8670 -5.0833 5.2530 41 1 4.0794 -3.1149 6.4215 42 1 3.7941 -0.6824 6.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986301964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:26 Heat of formation + Delta-G solvation = -152.096108 kcal Electronic energy + Delta-G solvation = -30154.931243 eV Core-core repulsion = 25491.848114 eV Total energy + Delta-G solvation = -4663.083129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -50.14226 -49.88988 -47.89026 -41.69865 -39.92951 -38.77359 -36.01023 -33.88637 -32.87815 -32.67290 -32.02069 -30.64252 -27.14509 -26.80611 -25.73855 -25.00828 -23.65305 -22.98731 -21.66884 -20.67646 -19.24067 -18.77299 -18.63786 -18.38208 -18.11140 -17.83039 -17.32696 -17.15948 -16.85191 -16.51556 -15.98749 -15.58664 -15.46346 -15.19735 -14.93135 -14.84232 -14.73158 -14.60149 -14.46403 -14.26325 -14.12875 -13.74672 -13.52072 -13.35754 -13.27238 -13.17791 -12.95984 -12.76560 -12.67125 -12.49144 -12.17054 -12.08406 -12.03124 -11.73015 -11.62799 -11.11347 -10.93755 -10.33053 -10.10984 -9.81318 -9.05564 -7.95177 -5.25840 -0.48530 -0.16190 1.45142 1.49266 1.49822 1.59817 1.70803 2.29599 2.56357 2.69244 2.97904 3.11116 3.31562 3.37378 3.46266 3.63634 3.69590 3.76797 3.90944 3.98554 4.09451 4.12658 4.18131 4.23894 4.31023 4.42385 4.47055 4.56441 4.58276 4.64321 4.77922 4.83694 4.90379 4.96546 5.03540 5.14491 5.16598 5.23549 5.38603 5.52385 5.53680 6.24445 6.33119 6.87905 7.31279 8.01791 8.26248 9.28574 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.003002 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.939775 B = 9326.210616 C =10502.367453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.047 0.953 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.729 5.729 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.261 1.261 13 H -0.297 1.297 14 H -0.296 1.296 15 C -0.147 4.147 16 C 0.100 3.900 17 N -0.600 5.600 18 C 0.564 3.436 19 O -0.571 6.571 20 C -0.186 4.186 21 C -0.031 4.031 22 C -0.191 4.191 23 C 0.314 3.686 24 F -0.212 7.212 25 F -0.210 7.210 26 C -0.009 4.009 27 C -0.152 4.152 28 C 0.143 3.857 29 F -0.139 7.139 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.202 0.798 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -17.505 25.361 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.065 0.935 4 C 0.063 3.937 5 H 0.092 0.908 6 N -0.368 5.368 7 C -0.368 4.368 8 H 0.103 0.897 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.185 1.185 13 H -0.225 1.225 14 H -0.223 1.223 15 C -0.187 4.187 16 C -0.022 4.022 17 N -0.332 5.332 18 C 0.354 3.646 19 O -0.451 6.451 20 C -0.190 4.190 21 C -0.050 4.050 22 C -0.192 4.192 23 C 0.261 3.739 24 F -0.194 7.194 25 F -0.191 7.191 26 C -0.027 4.027 27 C -0.171 4.171 28 C 0.123 3.877 29 F -0.117 7.117 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.203 0.797 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.166 0.834 40 H 0.194 0.806 41 H 0.219 0.781 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.492 -17.082 25.350 30.670 hybrid contribution -0.116 1.350 -1.566 2.071 sum 2.376 -15.732 23.784 28.615 Atomic orbital electron populations 1.21950 0.93864 1.02612 1.01861 1.21704 0.95146 0.95461 0.84854 0.93522 1.21419 0.94896 0.91074 0.86310 0.90778 1.42514 1.81098 1.09445 1.03742 1.19663 1.36828 0.95565 0.84698 0.89697 1.25591 1.03071 0.95846 1.02253 1.69845 1.54604 1.04423 1.33356 0.85061 0.76543 0.78038 0.80031 1.18456 1.22482 1.22295 1.23409 0.99132 1.01558 0.94628 1.22786 0.95687 0.87841 0.95884 1.48467 1.51761 1.28866 1.04126 1.18175 0.80941 0.83525 0.81985 1.90782 1.39552 1.31027 1.83753 1.19825 1.08312 0.95549 0.95321 1.21374 0.93204 0.90932 0.99489 1.20665 1.05367 0.96240 0.96905 1.20888 0.76099 0.87332 0.89625 1.93019 1.45206 1.84482 1.96655 1.93029 1.73662 1.94437 1.57966 1.21542 0.92186 0.92761 0.96198 1.21513 1.01376 0.95224 0.98949 1.18309 0.97446 0.77442 0.94552 1.91549 1.92999 1.31219 1.95954 0.92933 0.91892 0.91070 0.79736 0.94107 0.92503 0.88691 0.88915 0.88469 0.83440 0.80618 0.78124 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.10 71.98 0.66 -4.41 16 2 C 0.13 4.94 3.23 45.35 0.15 5.08 16 3 H 0.05 2.04 7.69 -2.39 -0.02 2.02 16 4 C 0.17 6.62 3.12 46.18 0.14 6.76 16 5 H 0.07 2.74 7.82 -2.39 -0.02 2.72 16 6 N -0.73 -36.16 5.25 -317.31 -1.67 -37.83 16 7 C -0.24 -12.64 9.98 84.03 0.84 -11.80 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.24 16 9 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -59.62 13.06 21.65 0.28 -59.34 16 11 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 13 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 15 C -0.15 -4.66 6.77 31.99 0.22 -4.45 16 16 C 0.10 2.52 5.12 86.86 0.44 2.97 16 17 N -0.60 -19.31 3.06 -791.59 -2.43 -21.74 16 18 C 0.56 19.20 7.25 86.74 0.63 19.83 16 19 O -0.57 -23.96 15.02 -3.95 -0.06 -24.02 16 20 C -0.19 -4.74 5.53 -20.05 -0.11 -4.85 16 21 C -0.03 -0.58 7.45 22.52 0.17 -0.41 16 22 C -0.19 -2.14 5.37 -19.90 -0.11 -2.24 16 23 C 0.31 2.54 5.45 71.23 0.39 2.92 16 24 F -0.21 -2.93 17.25 44.97 0.78 -2.16 16 25 F -0.21 -2.85 17.25 44.97 0.78 -2.08 16 26 C -0.01 -0.06 9.66 22.31 0.22 0.16 16 27 C -0.15 -1.78 10.01 22.28 0.22 -1.56 16 28 C 0.14 3.29 7.24 22.67 0.16 3.45 16 29 F -0.14 -4.13 16.13 44.97 0.73 -3.41 16 30 H 0.05 1.95 6.76 -2.38 -0.02 1.94 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.37 20.44 7.51 -92.71 -0.70 19.74 16 34 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.09 2.03 6.59 -2.39 -0.02 2.01 16 38 H 0.10 1.96 7.23 -2.39 -0.02 1.94 16 39 H 0.15 2.65 5.42 -2.91 -0.02 2.64 16 40 H 0.18 -0.43 7.87 -2.39 -0.02 -0.45 16 41 H 0.20 -0.96 7.94 -2.91 -0.02 -0.99 16 42 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -77.65 360.28 5.30 -72.35 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.39 Total: 23.12 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.48 Total: 7.65 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -3.81 Total: -118.90 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 2.28 Total: -7.64 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -77.65 5.30 -72.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986301964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.750 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds