Wall clock time and date at job start Wed Apr 1 2020 02:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 110.00034 * 2 1 4 4 C 1.54318 * 109.88499 * 121.09666 * 2 1 3 5 5 H 1.09000 * 110.72512 * 259.97395 * 4 2 1 6 6 N 1.46501 * 110.71940 * 23.24704 * 4 2 1 7 7 C 1.36938 * 120.00211 * 263.92764 * 6 4 2 8 8 H 1.08004 * 119.99741 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00368 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00250 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99885 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46794 * 89.99938 * 11 9 7 13 13 H 1.48494 * 109.47021 * 210.00174 * 11 9 7 14 14 H 1.48503 * 109.47023 * 330.00749 * 11 9 7 15 15 C 1.55157 * 102.94673 * 141.60991 * 4 2 1 16 16 C 1.54908 * 101.58089 * 324.50037 * 15 4 2 17 17 N 1.47027 * 109.88648 * 238.90632 * 2 1 3 18 18 C 1.34774 * 125.64431 * 61.59915 * 17 2 1 19 19 O 1.21578 * 119.99711 * 172.59613 * 18 17 2 20 20 C 1.47692 * 120.00375 * 352.59794 * 18 17 2 21 21 C 1.39652 * 120.16549 * 18.50940 * 20 18 17 22 22 C 1.37858 * 119.87858 * 179.74217 * 21 20 18 23 23 C 1.50699 * 119.89453 * 180.22488 * 22 21 20 24 24 F 1.39899 * 109.47325 * 300.30651 * 23 22 21 25 25 F 1.39906 * 109.46474 * 60.30411 * 23 22 21 26 26 C 1.38459 * 120.21577 * 0.53332 * 22 21 20 27 27 C 1.38197 * 120.34033 * 359.71830 * 26 22 21 28 28 C 1.38326 * 120.11923 * 0.02562 * 27 26 22 29 29 F 1.35103 * 120.11294 * 179.97438 * 28 27 26 30 30 H 1.09003 * 109.46656 * 197.23617 * 1 2 3 31 31 H 1.08996 * 109.46870 * 317.23434 * 1 2 3 32 32 H 1.09001 * 109.47158 * 77.23795 * 1 2 3 33 33 H 0.97003 * 120.00266 * 83.92879 * 6 4 2 34 34 H 0.97003 * 119.99880 * 179.97438 * 10 9 7 35 35 H 1.08998 * 111.00752 * 206.42487 * 15 4 2 36 36 H 1.09011 * 111.00329 * 82.57220 * 15 4 2 37 37 H 1.08995 * 110.36737 * 155.84511 * 16 15 4 38 38 H 1.09003 * 110.36817 * 278.05858 * 16 15 4 39 39 H 1.08003 * 120.06507 * 359.97438 * 21 20 18 40 40 H 1.08994 * 109.47578 * 180.29835 * 23 22 21 41 41 H 1.07998 * 119.83112 * 179.74268 * 26 22 21 42 42 H 1.08002 * 119.94289 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 1 2.3530 -0.0460 2.0200 6 7 1.0472 -1.6855 1.7474 7 6 0.2168 -1.3118 2.7701 8 1 0.3045 -0.3268 3.2043 9 6 -0.7376 -2.1989 3.2487 10 7 -1.5360 -1.8395 4.2314 11 14 -0.8897 -3.9023 2.4971 12 1 -0.0060 -4.8462 3.2275 13 1 -2.2976 -4.3637 2.5976 14 1 -0.4862 -3.8510 1.0689 15 6 3.2877 -1.5142 0.6924 16 6 2.8146 -1.8794 -0.7368 17 7 2.0301 -0.7140 -1.1839 18 6 1.8074 -0.3620 -2.4657 19 8 2.3800 -0.9465 -3.3649 20 6 0.8679 0.7339 -2.7780 21 6 0.5072 1.6522 -1.7895 22 6 -0.3661 2.6760 -2.0889 23 6 -0.7515 3.6700 -1.0239 24 9 -1.3599 2.9989 0.0423 25 9 0.3937 4.3307 -0.5665 26 6 -0.8952 2.7902 -3.3633 27 6 -0.5486 1.8835 -4.3469 28 6 0.3306 0.8539 -4.0633 29 9 0.6689 -0.0328 -5.0249 30 1 -0.3633 -0.9816 0.3045 31 1 -0.3633 0.7544 0.6978 32 1 -0.3633 0.2270 -1.0023 33 1 0.9682 -2.5701 1.3571 34 1 -2.2032 -2.4593 4.5655 35 1 3.4853 -2.4110 1.2795 36 1 4.1655 -0.8688 0.6603 37 1 3.6717 -2.0337 -1.3922 38 1 2.1903 -2.7726 -0.7132 39 1 0.9147 1.5627 -0.7933 40 1 -1.4484 4.3972 -1.4406 41 1 -1.5821 3.5922 -3.5899 42 1 -0.9649 1.9789 -5.3389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986301966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:34 Heat of formation + Delta-G solvation = -110.407537 kcal Electronic energy + Delta-G solvation = -31541.274911 eV Core-core repulsion = 26879.999534 eV Total energy + Delta-G solvation = -4661.275377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.10822 -49.89115 -47.89085 -42.06087 -39.83542 -39.06417 -35.93023 -34.25633 -33.35397 -32.85911 -31.24453 -30.97113 -27.40176 -26.77669 -25.43764 -25.01918 -23.91088 -22.63781 -21.67016 -20.60970 -19.78297 -18.88782 -18.56733 -18.40675 -18.10398 -17.61139 -17.49511 -17.07283 -16.82247 -16.42986 -16.10646 -15.98806 -15.70297 -15.22438 -14.85048 -14.79700 -14.65970 -14.50983 -14.40594 -14.26085 -14.24263 -13.90771 -13.63618 -13.39187 -13.34308 -13.12106 -12.89440 -12.63663 -12.40371 -12.24957 -12.06121 -11.97176 -11.91164 -11.75908 -11.68001 -11.21581 -10.93463 -10.21664 -9.96892 -9.75597 -9.30481 -7.98828 -5.32063 -0.51866 -0.12681 1.37601 1.38071 1.44510 1.50309 1.79441 2.37192 2.48185 2.71448 2.98212 3.11206 3.27826 3.31943 3.42689 3.52194 3.69405 3.75246 3.77159 3.94161 4.12025 4.12491 4.18002 4.18921 4.32525 4.42084 4.49693 4.59266 4.67398 4.73903 4.78885 4.89456 4.90794 5.00184 5.08470 5.12273 5.17244 5.23999 5.54024 5.57694 5.82851 6.24121 6.33382 6.88739 7.09157 7.83322 8.00837 9.22095 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.004845 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.424315 B = 5777.418403 C = 7037.415622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.096 3.904 3 H 0.097 0.903 4 C 0.168 3.832 5 H 0.093 0.907 6 N -0.733 5.733 7 C -0.212 4.212 8 H 0.070 0.930 9 C -0.052 4.052 10 N -0.978 5.978 11 Si 0.936 3.064 12 H -0.279 1.279 13 H -0.303 1.303 14 H -0.262 1.262 15 C -0.130 4.130 16 C 0.104 3.896 17 N -0.599 5.599 18 C 0.566 3.434 19 O -0.574 6.574 20 C -0.205 4.205 21 C -0.035 4.035 22 C -0.209 4.209 23 C 0.310 3.690 24 F -0.213 7.213 25 F -0.211 7.211 26 C -0.004 4.004 27 C -0.165 4.165 28 C 0.153 3.847 29 F -0.133 7.133 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.363 0.637 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.199 0.801 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 13.206 -16.329 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 H 0.114 0.886 4 C 0.058 3.942 5 H 0.111 0.889 6 N -0.374 5.374 7 C -0.343 4.343 8 H 0.088 0.912 9 C -0.244 4.244 10 N -0.629 5.629 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.231 1.231 14 H -0.188 1.188 15 C -0.169 4.169 16 C -0.018 4.018 17 N -0.331 5.331 18 C 0.357 3.643 19 O -0.455 6.455 20 C -0.209 4.209 21 C -0.053 4.053 22 C -0.211 4.211 23 C 0.257 3.743 24 F -0.194 7.194 25 F -0.192 7.192 26 C -0.022 4.022 27 C -0.183 4.183 28 C 0.133 3.867 29 F -0.111 7.111 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.197 0.803 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.181 0.819 40 H 0.193 0.807 41 H 0.216 0.784 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.389 12.978 -16.658 21.386 hybrid contribution -0.299 -1.852 -0.047 1.876 sum 3.091 11.126 -16.704 20.307 Atomic orbital electron populations 1.22522 0.94553 1.03862 1.00441 1.22947 0.95175 0.96440 0.86367 0.88613 1.21453 0.88154 0.92035 0.92599 0.88869 1.42735 1.39811 1.14501 1.40316 1.18952 1.08922 0.99144 1.07270 0.91222 1.25243 0.98784 1.01230 0.99147 1.69839 1.24794 1.37058 1.31166 0.85710 0.76427 0.82301 0.79012 1.20536 1.23077 1.18751 1.23150 0.97900 1.02442 0.93374 1.22314 0.95205 0.87690 0.96578 1.48497 1.51420 1.28651 1.04543 1.18008 0.81580 0.83183 0.81541 1.90767 1.51626 1.57021 1.46116 1.19871 1.05218 1.00782 0.95046 1.22343 0.93059 0.90105 0.99809 1.20659 1.03522 0.99330 0.97543 1.20929 0.82950 0.89417 0.81027 1.93058 1.83385 1.82713 1.60253 1.93003 1.54126 1.81640 1.90468 1.21528 0.94668 0.97219 0.88771 1.21465 0.99179 0.94063 1.03584 1.18259 0.95540 0.88929 0.84007 1.91546 1.90708 1.67028 1.61818 0.92330 0.91719 0.92248 0.80331 0.93585 0.88484 0.87576 0.89888 0.92579 0.81895 0.80719 0.78373 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 7.00 71.98 0.50 -4.98 16 2 C 0.10 2.96 2.72 45.34 0.12 3.08 16 3 H 0.10 2.60 6.20 -2.38 -0.01 2.58 16 4 C 0.17 5.42 3.52 46.18 0.16 5.59 16 5 H 0.09 2.95 8.06 -2.39 -0.02 2.93 16 6 N -0.73 -30.24 3.35 -317.33 -1.06 -31.30 16 7 C -0.21 -10.85 9.23 84.03 0.78 -10.08 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 9 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 10 N -0.98 -59.98 13.97 21.65 0.30 -59.68 16 11 Si 0.94 44.26 27.74 68.60 1.90 46.16 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 14 H -0.26 -11.53 6.52 99.48 0.65 -10.88 16 15 C -0.13 -3.33 6.69 31.99 0.21 -3.11 16 16 C 0.10 3.05 6.88 86.85 0.60 3.65 16 17 N -0.60 -19.19 3.07 -791.59 -2.43 -21.62 16 18 C 0.57 19.81 7.58 86.74 0.66 20.46 16 19 O -0.57 -23.43 15.79 -3.96 -0.06 -23.50 16 20 C -0.21 -6.02 5.03 -20.05 -0.10 -6.12 16 21 C -0.04 -0.89 5.73 22.52 0.13 -0.76 16 22 C -0.21 -3.79 5.37 -19.90 -0.11 -3.90 16 23 C 0.31 5.00 5.45 71.24 0.39 5.39 16 24 F -0.21 -5.26 16.72 44.97 0.75 -4.51 16 25 F -0.21 -4.32 17.26 44.97 0.78 -3.55 16 26 C 0.00 -0.05 9.66 22.31 0.22 0.17 16 27 C -0.16 -2.57 10.01 22.28 0.22 -2.34 16 28 C 0.15 3.99 7.26 22.67 0.16 4.15 16 29 F -0.13 -4.12 15.73 44.97 0.71 -3.42 16 30 H 0.06 2.46 6.12 -2.39 -0.01 2.45 16 31 H 0.06 2.37 7.61 -2.39 -0.02 2.36 16 32 H 0.06 1.95 4.20 -2.39 -0.01 1.94 16 33 H 0.36 15.12 5.71 -92.71 -0.53 14.60 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.16 4.39 2.73 -2.91 -0.01 4.38 16 40 H 0.18 0.87 7.87 -2.39 -0.02 0.85 16 41 H 0.20 0.13 7.94 -2.91 -0.02 0.11 16 42 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -75.16 345.23 5.81 -69.35 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.51 Total: 23.29 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 4.41 Total: 8.76 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.19 Total: -112.60 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.50 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 2.24 Total: -11.47 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -75.16 5.81 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986301966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.059 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds