Wall clock time and date at job start Wed Apr 1 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.99904 * 2 1 4 4 C 1.54326 * 109.88130 * 121.09455 * 2 1 3 5 5 H 1.08993 * 110.87548 * 23.17712 * 4 2 1 6 6 N 1.46493 * 110.72230 * 259.96889 * 4 2 1 7 7 C 1.36933 * 120.00362 * 160.02485 * 6 4 2 8 8 H 1.08001 * 119.99721 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00571 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99748 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00432 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47258 * 59.99717 * 11 9 7 13 13 H 1.48500 * 109.47283 * 300.00123 * 11 9 7 14 14 H 1.48499 * 109.47275 * 180.02562 * 11 9 7 15 15 C 1.55162 * 102.93877 * 141.60873 * 4 2 1 16 16 C 1.54906 * 101.58372 * 324.49831 * 15 4 2 17 17 N 1.47028 * 109.87968 * 238.90205 * 2 1 3 18 18 C 1.34774 * 125.64813 * 61.60822 * 17 2 1 19 19 O 1.21565 * 120.00133 * 173.78452 * 18 17 2 20 20 C 1.47725 * 119.99928 * 353.79089 * 18 17 2 21 21 C 1.39669 * 120.12057 * 17.00138 * 20 18 17 22 22 C 1.37814 * 119.88245 * 179.97438 * 21 20 18 23 23 C 1.38680 * 120.11813 * 0.02562 * 22 21 20 24 24 F 1.35102 * 119.88024 * 180.02562 * 23 22 21 25 25 C 1.38636 * 120.23597 * 359.97438 * 23 22 21 26 26 C 1.50706 * 119.93814 * 180.02562 * 25 23 22 27 27 F 1.39901 * 109.46943 * 30.00062 * 26 25 23 28 28 F 1.39898 * 109.47184 * 150.00235 * 26 25 23 29 29 C 1.37853 * 120.12324 * 359.78984 * 25 23 22 30 30 H 1.09001 * 109.46902 * 316.34634 * 1 2 3 31 31 H 1.08998 * 109.47416 * 76.35101 * 1 2 3 32 32 H 1.09003 * 109.47311 * 196.35220 * 1 2 3 33 33 H 0.97002 * 120.00003 * 340.02941 * 6 4 2 34 34 H 0.97001 * 120.00289 * 359.97438 * 10 9 7 35 35 H 1.09003 * 111.00666 * 82.57466 * 15 4 2 36 36 H 1.09000 * 111.00350 * 206.41957 * 15 4 2 37 37 H 1.08997 * 110.37110 * 155.85208 * 16 15 4 38 38 H 1.09000 * 110.36709 * 278.06332 * 16 15 4 39 39 H 1.08002 * 120.05766 * 0.02562 * 21 20 18 40 40 H 1.08002 * 119.94256 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46855 * 270.00284 * 26 25 23 42 42 H 1.08003 * 120.06473 * 180.23141 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 1.3065 -1.4458 1.6211 6 7 2.4555 0.1960 2.2875 7 6 2.5576 -0.2225 3.5873 8 1 2.3431 -1.2499 3.8422 9 6 2.9368 0.6735 4.5773 10 7 3.1987 1.9254 4.2666 11 14 3.0767 0.1024 6.3503 12 1 4.0864 -0.9827 6.4426 13 1 1.7601 -0.4062 6.8119 14 1 3.4942 1.2419 7.2060 15 6 3.2876 -1.5143 0.6923 16 6 2.8145 -1.8794 -0.7368 17 7 2.0300 -0.7141 -1.1840 18 6 1.8073 -0.3621 -2.4657 19 8 2.3632 -0.9610 -3.3659 20 6 0.8880 0.7515 -2.7768 21 6 0.5270 1.6615 -1.7807 22 6 -0.3306 2.6990 -2.0764 23 6 -0.8355 2.8399 -3.3603 24 9 -1.6755 3.8590 -3.6451 25 6 -0.4805 1.9395 -4.3529 26 6 -1.0327 2.0994 -5.7460 27 9 -1.2674 3.4546 -6.0019 28 9 -0.1103 1.6027 -6.6731 29 6 0.3805 0.9010 -4.0691 30 1 -0.3633 0.7436 0.7094 31 1 -0.3634 0.2425 -0.9986 32 1 -0.3634 -0.9861 0.2893 33 1 2.6485 1.1186 2.0585 34 1 3.1272 2.2218 3.3458 35 1 4.1655 -0.8689 0.6603 36 1 3.4852 -2.4110 1.2796 37 1 3.6715 -2.0339 -1.3923 38 1 2.1902 -2.7726 -0.7131 39 1 0.9200 1.5529 -0.7806 40 1 -0.6107 3.4030 -1.3068 41 1 -1.9679 1.5462 -5.8318 42 1 0.6594 0.2022 -4.8440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986302272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:08 Heat of formation + Delta-G solvation = -99.853115 kcal Electronic energy + Delta-G solvation = -30217.355470 eV Core-core repulsion = 25556.537767 eV Total energy + Delta-G solvation = -4660.817703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.61488 -49.09706 -47.31839 -41.09497 -38.80087 -37.74998 -34.65336 -33.45577 -31.77208 -31.48193 -30.59286 -29.04103 -26.54525 -25.37201 -24.39848 -23.27549 -22.81828 -22.04275 -20.67533 -19.69308 -18.15265 -18.06981 -17.89467 -17.66608 -17.36079 -16.68455 -16.16184 -15.94130 -15.74443 -15.59888 -14.95469 -14.65679 -14.52345 -14.16088 -13.97700 -13.76527 -13.72657 -13.56877 -13.50757 -13.25458 -13.11604 -12.92534 -12.57871 -12.30193 -12.08175 -11.92231 -11.76774 -11.48994 -11.11156 -11.08481 -10.75639 -10.73973 -10.40523 -10.10199 -10.03391 -9.48990 -9.33775 -9.13477 -9.05612 -8.65431 -7.25148 -6.26101 -3.29499 0.26755 0.65126 2.42601 2.80449 3.23312 3.33411 3.43745 3.45879 3.63188 3.63800 3.75782 4.02275 4.22661 4.46850 4.50407 4.51298 4.58262 4.73136 4.83063 4.91752 5.02574 5.20988 5.24164 5.30958 5.41737 5.46660 5.54002 5.55904 5.59622 5.64497 5.75228 5.81506 5.91204 5.99707 6.05037 6.18687 6.23733 6.31892 6.43031 6.68487 7.43948 7.64324 8.02619 8.58110 9.00409 9.87207 9.99243 11.21335 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.002797 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.764322 B =10009.451599 C =11242.769501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 H 0.087 0.913 4 C 0.184 3.816 5 H 0.070 0.930 6 N -0.726 5.726 7 C -0.337 4.337 8 H 0.067 0.933 9 C -0.039 4.039 10 N -0.938 5.938 11 Si 1.079 2.921 12 H -0.294 1.294 13 H -0.294 1.294 14 H -0.284 1.284 15 C -0.156 4.156 16 C 0.106 3.894 17 N -0.601 5.601 18 C 0.576 3.424 19 O -0.540 6.540 20 C -0.150 4.150 21 C -0.052 4.052 22 C -0.171 4.171 23 C 0.160 3.840 24 F -0.122 7.122 25 C -0.228 4.228 26 C 0.321 3.679 27 F -0.193 7.193 28 F -0.194 7.194 29 C 0.001 3.999 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.368 0.632 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 -1.847 -15.969 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.001 3.999 3 H 0.105 0.895 4 C 0.073 3.927 5 H 0.088 0.912 6 N -0.368 5.368 7 C -0.468 4.468 8 H 0.085 0.915 9 C -0.237 4.237 10 N -0.583 5.583 11 Si 0.910 3.090 12 H -0.221 1.221 13 H -0.221 1.221 14 H -0.210 1.210 15 C -0.197 4.197 16 C -0.016 4.016 17 N -0.334 5.334 18 C 0.365 3.635 19 O -0.418 6.418 20 C -0.153 4.153 21 C -0.069 4.069 22 C -0.190 4.190 23 C 0.140 3.860 24 F -0.100 7.100 25 C -0.230 4.230 26 C 0.267 3.733 27 F -0.174 7.174 28 F -0.175 7.175 29 C -0.018 4.018 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.194 0.806 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.288 -1.808 -14.898 17.649 hybrid contribution -0.399 0.049 -1.744 1.789 sum -9.687 -1.758 -16.642 19.336 Atomic orbital electron populations 1.22809 0.94482 1.03868 1.02495 1.22354 0.94507 0.96636 0.86370 0.89542 1.21213 0.93958 0.91348 0.86211 0.91181 1.42333 1.82225 1.08285 1.03966 1.19976 1.45032 0.97095 0.84683 0.91475 1.25794 0.99192 0.94402 1.04308 1.70914 1.51356 1.15846 1.20160 0.83250 0.75976 0.74930 0.74886 1.22145 1.22139 1.20983 1.23581 1.01013 1.01976 0.93112 1.22323 0.95216 0.87580 0.96472 1.48387 1.51803 1.28771 1.04454 1.17635 0.81338 0.83040 0.81454 1.90782 1.50521 1.55389 1.45123 1.19895 1.02385 0.98651 0.94418 1.22851 0.92332 0.90203 1.01548 1.21190 1.01235 1.01221 0.95363 1.17625 0.89981 0.84862 0.93491 1.91580 1.67863 1.56536 1.94064 1.20373 1.06630 1.00552 0.95406 1.20141 0.91688 0.78014 0.83466 1.93048 1.95019 1.34619 1.94763 1.93026 1.69404 1.87255 1.67838 1.20855 0.90388 0.94532 0.95995 0.90311 0.91195 0.91487 0.79835 0.93378 0.90658 0.90172 0.90595 0.91454 0.80602 0.83070 0.85680 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 7.82 37.16 0.29 -1.83 16 2 C 0.11 1.46 2.49 -66.95 -0.17 1.29 16 3 H 0.09 1.21 5.71 -51.93 -0.30 0.92 16 4 C 0.18 3.11 3.11 -66.10 -0.21 2.90 16 5 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 6 N -0.73 -15.78 5.25 -51.66 -0.27 -16.05 16 7 C -0.34 -8.54 9.98 -15.06 -0.15 -8.69 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.26 16 9 C -0.04 -1.04 5.50 -17.43 -0.10 -1.13 16 10 N -0.94 -26.98 13.70 55.49 0.76 -26.22 16 11 Si 1.08 24.21 29.92 -169.99 -5.09 19.13 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.16 -2.43 6.77 -24.58 -0.17 -2.60 16 16 C 0.11 1.47 6.94 -2.53 -0.02 1.46 16 17 N -0.60 -8.51 3.07 -164.16 -0.50 -9.02 16 18 C 0.58 8.55 7.61 -12.38 -0.09 8.45 16 19 O -0.54 -9.47 16.70 5.31 0.09 -9.38 16 20 C -0.15 -1.87 5.07 -104.96 -0.53 -2.40 16 21 C -0.05 -0.57 6.21 -39.20 -0.24 -0.82 16 22 C -0.17 -1.72 10.01 -39.57 -0.40 -2.11 16 23 C 0.16 1.70 7.15 -39.27 -0.28 1.42 16 24 F -0.12 -1.35 15.41 2.25 0.03 -1.32 16 25 C -0.23 -2.37 5.74 -104.61 -0.60 -2.97 16 26 C 0.32 2.91 5.59 36.01 0.20 3.12 16 27 F -0.19 -2.13 15.48 2.25 0.03 -2.09 16 28 F -0.19 -2.05 16.47 2.25 0.04 -2.02 16 29 C 0.00 0.01 8.93 -39.20 -0.35 -0.34 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.76 4.23 -51.93 -0.22 0.54 16 32 H 0.07 0.79 7.74 -51.93 -0.40 0.39 16 33 H 0.37 8.25 6.34 -40.82 -0.26 7.99 16 34 H 0.26 7.13 6.77 -40.82 -0.28 6.86 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.07 7.98 -51.93 -0.41 0.65 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.18 1.97 2.63 -52.49 -0.14 1.83 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.15 1.70 7.27 -52.48 -0.38 1.32 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -30.72 349.06 -6.98 -37.69 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.52 Total: 8.25 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -2.81 Total: -4.24 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.01 Total: -51.28 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.43 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.72 -6.98 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986302272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.161 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds