Wall clock time and date at job start Wed Apr 1 2020 02:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.99851 * 2 1 4 4 C 1.54335 * 109.98679 * 238.96663 * 2 1 3 5 5 H 1.09010 * 110.84698 * 100.20123 * 4 2 1 6 6 N 1.46494 * 110.67119 * 337.04874 * 4 2 1 7 7 C 1.36939 * 119.99945 * 97.24450 * 6 4 2 8 8 H 1.07995 * 120.00521 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99861 * 180.02562 * 7 6 4 10 10 N 1.31616 * 120.00083 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00030 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47030 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47318 * 119.99680 * 11 9 7 14 14 H 1.48502 * 109.46844 * 239.99805 * 11 9 7 15 15 C 1.55152 * 103.02042 * 218.66275 * 4 2 1 16 16 C 1.54915 * 101.58081 * 35.30991 * 15 4 2 17 17 N 1.47020 * 109.88423 * 121.10445 * 2 1 3 18 18 C 1.34780 * 125.64584 * 298.39078 * 17 2 1 19 19 O 1.21282 * 119.99979 * 359.71507 * 18 17 2 20 20 C 1.50692 * 119.99881 * 179.71956 * 18 17 2 21 21 C 1.50704 * 109.46976 * 180.02562 * 20 18 17 22 22 C 1.38246 * 119.97272 * 265.01769 * 21 20 18 23 23 C 1.38367 * 120.02306 * 179.97438 * 22 21 20 24 24 F 1.35096 * 120.00990 * 180.02562 * 23 22 21 25 25 C 1.38694 * 119.97547 * 0.02562 * 23 22 21 26 26 F 1.35104 * 120.01378 * 179.97438 * 25 23 22 27 27 C 1.38345 * 119.95890 * 0.02562 * 25 23 22 28 28 C 1.38422 * 119.98170 * 84.99854 * 21 20 18 29 29 F 1.35103 * 119.98809 * 359.74546 * 28 21 20 30 30 H 1.09004 * 109.46406 * 304.34768 * 1 2 3 31 31 H 1.08999 * 109.47434 * 64.34361 * 1 2 3 32 32 H 1.09000 * 109.47073 * 184.34942 * 1 2 3 33 33 H 0.97000 * 119.99733 * 277.24511 * 6 4 2 34 34 H 0.96997 * 120.00418 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00807 * 277.23782 * 15 4 2 36 36 H 1.09003 * 111.03791 * 153.39549 * 15 4 2 37 37 H 1.08997 * 110.36170 * 204.14945 * 16 15 4 38 38 H 1.09001 * 110.36443 * 81.83031 * 16 15 4 39 39 H 1.08994 * 109.47871 * 59.99865 * 20 18 17 40 40 H 1.09001 * 109.47096 * 299.99779 * 20 18 17 41 41 H 1.07995 * 119.99339 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.01470 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7477 -1.2428 5 1 2.3597 -0.0448 -2.0192 6 7 1.0482 -1.6787 -1.7533 7 6 0.2388 -1.3079 -2.7939 8 1 0.3448 -0.3294 -3.2384 9 6 -0.7180 -2.1898 -3.2773 10 7 -0.8469 -3.3825 -2.7359 11 14 -1.8216 -1.6844 -4.6972 12 1 -1.4777 -0.3044 -5.1244 13 1 -1.6244 -2.6187 -5.8343 14 1 -3.2405 -1.7280 -4.2610 15 6 3.2863 -1.5183 -0.6917 16 6 2.8099 -1.8826 0.7366 17 7 2.0301 -0.7142 1.1838 18 6 1.8075 -0.3623 2.4656 19 8 1.1477 0.6235 2.7180 20 6 2.3785 -1.1937 3.5852 21 6 1.9866 -0.5902 4.9094 22 6 2.8482 0.2766 5.5554 23 6 2.4891 0.8317 6.7710 24 9 3.3311 1.6792 7.4018 25 6 1.2646 0.5177 7.3414 26 9 0.9134 1.0589 8.5285 27 6 0.4034 -0.3507 6.6946 28 6 0.7640 -0.9039 5.4777 29 9 -0.0795 -1.7468 4.8427 30 1 -0.3632 0.5799 0.8485 31 1 -0.3634 0.4449 -0.9263 32 1 -0.3633 -1.0247 0.0779 33 1 0.9532 -2.5577 -1.3543 34 1 -1.5152 -3.9990 -3.0739 35 1 4.1669 -0.8768 -0.6581 36 1 3.4812 -2.4155 -1.2793 37 1 3.6656 -2.0414 1.3929 38 1 2.1801 -2.7719 0.7112 39 1 3.4652 -1.2164 3.5033 40 1 1.9880 -2.2092 3.5194 41 1 3.8019 0.5207 5.1113 42 1 -0.5501 -0.5961 7.1382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987057083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:14 Heat of formation + Delta-G solvation = -124.365975 kcal Electronic energy + Delta-G solvation = -29911.472715 eV Core-core repulsion = 25249.592055 eV Total energy + Delta-G solvation = -4661.880660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.81286 -49.24044 -48.88289 -40.18358 -39.03717 -37.38794 -34.05753 -33.09840 -31.55292 -30.82606 -30.64503 -29.09914 -27.40170 -25.27288 -23.86226 -23.45811 -22.97977 -21.96510 -19.92893 -18.67045 -18.49934 -18.23767 -17.55680 -17.54852 -16.93911 -16.58013 -16.10580 -15.88785 -15.64188 -15.27640 -15.10166 -14.85944 -14.71115 -14.56091 -14.21056 -14.07867 -13.63145 -13.55605 -13.31626 -12.90809 -12.65102 -12.62212 -12.48179 -12.05921 -11.93374 -11.74617 -11.51499 -11.35783 -10.92361 -10.90540 -10.65757 -10.52432 -10.21764 -10.07075 -9.76196 -9.66934 -9.40585 -9.01195 -8.84532 -8.30447 -7.08228 -5.85966 -3.15330 0.38882 0.48238 2.70884 2.80155 3.27583 3.32026 3.38632 3.45191 3.46793 3.65825 3.99510 4.05363 4.16028 4.51498 4.56212 4.64961 4.90708 4.95391 5.14976 5.15705 5.24432 5.28093 5.36275 5.37912 5.52671 5.58828 5.67083 5.68865 5.71562 5.81668 6.04964 6.18752 6.24859 6.30291 6.40330 6.52370 6.62120 6.80244 6.99624 7.31042 7.63085 7.83321 8.31188 8.37659 9.43798 9.97136 10.32199 11.36088 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.002550 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.705541 B =10977.370196 C =11512.925955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.109 3.891 3 H 0.060 0.940 4 C 0.170 3.830 5 H 0.075 0.925 6 N -0.708 5.708 7 C -0.240 4.240 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.905 3.095 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.146 4.146 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.527 3.473 19 O -0.539 6.539 20 C -0.102 4.102 21 C -0.075 4.075 22 C -0.084 4.084 23 C 0.059 3.941 24 F -0.125 7.125 25 C 0.096 3.904 26 F -0.122 7.122 27 C -0.163 4.163 28 C 0.141 3.859 29 F -0.118 7.118 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 3.211 17.884 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.004 3.996 3 H 0.078 0.922 4 C 0.058 3.942 5 H 0.093 0.907 6 N -0.347 5.347 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.185 4.185 16 C -0.023 4.023 17 N -0.336 5.336 18 C 0.315 3.685 19 O -0.417 6.417 20 C -0.142 4.142 21 C -0.076 4.076 22 C -0.103 4.103 23 C 0.039 3.961 24 F -0.104 7.104 25 C 0.076 3.924 26 F -0.100 7.100 27 C -0.182 4.182 28 C 0.121 3.879 29 F -0.097 7.097 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.174 0.826 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.110 3.844 17.951 20.958 hybrid contribution -0.852 -0.044 -0.368 0.929 sum 9.258 3.800 17.584 20.233 Atomic orbital electron populations 1.21755 0.93706 1.02807 1.00798 1.22753 0.96202 0.95388 0.85295 0.92234 1.21253 0.88481 0.92254 0.92258 0.90667 1.42332 1.38537 1.15131 1.38743 1.19235 1.10956 0.99156 1.07762 0.91004 1.24724 0.99738 0.96237 0.99817 1.69653 1.37236 1.07008 1.43808 0.86160 0.80616 0.77605 0.82046 1.20503 1.21882 1.21861 1.23164 0.98621 1.01859 0.94865 1.22344 0.94618 0.89118 0.96244 1.48611 1.51860 1.28178 1.04962 1.19806 0.80958 0.85421 0.82362 1.90709 1.40070 1.27701 1.83186 1.20646 1.03519 1.00752 0.89274 1.19264 0.93107 0.98717 0.96562 1.20756 1.01317 0.95704 0.92540 1.17511 0.88727 0.95910 0.93989 1.91545 1.69431 1.67985 1.81394 1.17202 0.93364 0.97907 0.83962 1.91558 1.91898 1.84004 1.42576 1.20905 1.01989 0.99622 0.95704 1.17069 0.88122 0.91755 0.90965 1.91587 1.69446 1.67634 1.80989 0.94235 0.91446 0.91606 0.78080 0.93481 0.91060 0.89444 0.91453 0.90979 0.87093 0.87057 0.82635 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.08 37.16 0.30 -2.40 16 2 C 0.11 1.91 3.43 -66.95 -0.23 1.68 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.17 2.99 3.53 -66.10 -0.23 2.76 16 5 H 0.08 1.33 8.05 -51.92 -0.42 0.91 16 6 N -0.71 -15.78 3.81 -51.65 -0.20 -15.98 16 7 C -0.24 -6.10 8.62 -15.06 -0.13 -6.23 16 8 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 9 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 11 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 C -0.15 -1.96 6.70 -24.58 -0.16 -2.13 16 16 C 0.10 1.25 6.62 -2.53 -0.02 1.23 16 17 N -0.60 -9.10 3.06 -163.02 -0.50 -9.60 16 18 C 0.53 7.91 7.63 -10.99 -0.08 7.83 16 19 O -0.54 -10.06 15.15 5.56 0.08 -9.98 16 20 C -0.10 -1.05 4.61 -29.04 -0.13 -1.19 16 21 C -0.07 -0.80 4.38 -104.55 -0.46 -1.26 16 22 C -0.08 -0.80 9.66 -39.53 -0.38 -1.18 16 23 C 0.06 0.62 7.31 -39.37 -0.29 0.33 16 24 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 25 C 0.10 1.02 7.31 -39.37 -0.29 0.73 16 26 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 27 C -0.16 -1.64 10.00 -39.46 -0.39 -2.03 16 28 C 0.14 1.62 7.24 -39.43 -0.29 1.33 16 29 F -0.12 -1.54 16.56 2.25 0.04 -1.51 16 30 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 31 H 0.07 1.44 7.32 -51.93 -0.38 1.06 16 32 H 0.06 1.50 7.55 -51.93 -0.39 1.11 16 33 H 0.39 9.22 7.86 -40.82 -0.32 8.90 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 0.78 7.76 -51.93 -0.40 0.37 16 40 H 0.11 1.05 7.79 -51.93 -0.40 0.65 16 41 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -30.68 363.12 -7.36 -38.04 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.15 Total: 6.33 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.88 Total: -0.86 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.03 Total: -51.38 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.11 Total: -4.15 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -7.36 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987057083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.330 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds