Wall clock time and date at job start Wed Apr 1 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.87114 * 2 1 4 4 C 1.54325 * 109.88022 * 121.17645 * 2 1 3 5 5 H 1.09002 * 110.72169 * 23.24839 * 4 2 1 6 6 N 1.46502 * 110.72143 * 259.97371 * 4 2 1 7 7 C 1.36937 * 120.00230 * 155.00256 * 6 4 2 8 8 H 1.08006 * 119.99505 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00226 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99892 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00250 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47121 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47160 * 120.00229 * 11 9 7 14 14 H 1.48503 * 109.47214 * 239.99778 * 11 9 7 15 15 C 1.55156 * 102.94206 * 141.60885 * 4 2 1 16 16 C 1.55137 * 101.48693 * 324.33320 * 15 4 2 17 17 N 1.47021 * 109.88010 * 238.98256 * 2 1 3 18 18 C 1.34773 * 125.64705 * 61.61057 * 17 2 1 19 19 O 1.21569 * 120.00424 * 5.33095 * 18 17 2 20 20 C 1.47697 * 119.99865 * 185.32960 * 18 17 2 21 21 C 1.39661 * 120.16621 * 36.37380 * 20 18 17 22 22 C 1.37847 * 119.87854 * 180.23095 * 21 20 18 23 23 C 1.38469 * 120.21699 * 359.48473 * 22 21 20 24 24 C 1.50700 * 119.82986 * 180.23284 * 23 22 21 25 25 F 1.39904 * 109.47105 * 120.27612 * 24 23 22 26 26 F 1.39903 * 109.47589 * 240.27790 * 24 23 22 27 27 C 1.38197 * 120.33732 * 0.51642 * 23 22 21 28 28 C 1.38317 * 120.12056 * 359.74336 * 27 23 22 29 29 F 1.35099 * 120.11326 * 179.97438 * 28 27 23 30 30 H 1.09000 * 109.47416 * 179.56322 * 1 2 3 31 31 H 1.09003 * 109.47352 * 299.56330 * 1 2 3 32 32 H 1.08997 * 109.47096 * 59.56197 * 1 2 3 33 33 H 0.97005 * 119.99842 * 335.00057 * 6 4 2 34 34 H 0.96995 * 120.00059 * 180.02562 * 10 9 7 35 35 H 1.09005 * 111.00435 * 82.57029 * 15 4 2 36 36 H 1.09000 * 111.00639 * 206.38380 * 15 4 2 37 37 H 1.08993 * 110.49143 * 278.45190 * 16 15 4 38 38 H 1.08998 * 110.33951 * 156.05866 * 16 15 4 39 39 H 1.08000 * 120.05974 * 359.94882 * 21 20 18 40 40 H 1.08002 * 119.89354 * 179.74605 * 22 21 20 41 41 H 1.09005 * 109.47238 * 0.27823 * 24 23 22 42 42 H 1.08002 * 119.94167 * 179.71904 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3050 -1.4483 1.6162 6 7 2.4554 0.1928 2.2879 7 6 2.4582 -0.1996 3.5998 8 1 2.1646 -1.2050 3.8633 9 6 2.8382 0.6947 4.5910 10 7 3.1965 1.9199 4.2697 11 14 2.8413 0.1597 6.3806 12 1 2.4002 -1.2551 6.4750 13 1 4.2135 0.2889 6.9335 14 1 1.9122 1.0202 7.1562 15 6 3.2875 -1.5153 0.6903 16 6 2.8099 -1.8816 -0.7395 17 7 2.0299 -0.7124 -1.1849 18 6 1.8073 -0.3586 -2.4662 19 8 1.2251 0.6784 -2.7181 20 6 2.2709 -1.2307 -3.5643 21 6 2.2272 -2.6196 -3.4237 22 6 2.6657 -3.4279 -4.4506 23 6 3.1395 -2.8675 -5.6249 24 6 3.6119 -3.7595 -6.7439 25 9 2.8471 -3.5151 -7.8896 26 9 4.9580 -3.4930 -7.0162 27 6 3.1867 -1.4944 -5.7736 28 6 2.7552 -0.6701 -4.7502 29 9 2.8019 0.6723 -4.8956 30 1 -0.3634 -1.0276 -0.0078 31 1 -0.3634 0.5070 0.8939 32 1 -0.3633 0.5206 -0.8860 33 1 2.7187 1.0959 2.0512 34 1 3.4625 2.5447 4.9623 35 1 4.1654 -0.8698 0.6592 36 1 3.4855 -2.4125 1.2767 37 1 2.1801 -2.7708 -0.7153 38 1 3.6655 -2.0393 -1.3960 39 1 1.8546 -3.0594 -2.5104 40 1 2.6358 -4.5019 -4.3405 41 1 3.5006 -4.8029 -6.4485 42 1 3.5617 -1.0641 -6.6905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987260400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:57 Heat of formation + Delta-G solvation = -153.920412 kcal Electronic energy + Delta-G solvation = -29626.796752 eV Core-core repulsion = 24963.634515 eV Total energy + Delta-G solvation = -4663.162237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.13833 -49.96162 -47.96487 -41.63781 -39.92577 -38.74299 -35.97946 -34.02938 -32.94857 -32.21121 -31.88583 -30.75087 -27.81189 -26.88708 -25.06006 -24.50545 -23.93768 -22.98790 -21.74767 -20.63281 -19.23894 -19.00887 -18.58126 -18.40459 -18.17905 -17.61855 -17.23029 -16.90853 -16.85311 -16.55109 -16.41664 -15.53428 -15.45570 -15.22663 -15.03448 -14.90268 -14.69979 -14.55978 -14.33727 -14.18356 -13.97528 -13.68495 -13.49364 -13.42165 -13.27334 -13.14121 -12.94961 -12.74766 -12.61775 -12.51825 -12.17946 -12.06416 -12.01557 -11.70452 -11.57777 -11.13700 -10.91973 -10.41902 -10.01688 -9.75398 -9.03169 -7.93656 -5.24021 -0.61687 -0.04158 1.45488 1.50146 1.50979 1.60805 1.72909 2.31818 2.56094 2.58379 2.97891 3.18168 3.31039 3.40113 3.41767 3.69237 3.76171 3.85816 3.94461 3.99104 4.05480 4.10662 4.16870 4.27643 4.37216 4.42257 4.50325 4.60750 4.66022 4.71386 4.82931 4.91166 4.93613 5.02374 5.03294 5.19546 5.24118 5.28250 5.44799 5.52684 5.55990 6.26251 6.39109 6.92103 7.32564 8.04488 8.27828 9.30273 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.002356 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.638856 B =11882.867700 C =12382.640633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.130 3.870 3 H 0.039 0.961 4 C 0.173 3.827 5 H 0.083 0.917 6 N -0.731 5.731 7 C -0.232 4.232 8 H 0.088 0.912 9 C -0.079 4.079 10 N -0.974 5.974 11 Si 0.973 3.027 12 H -0.258 1.258 13 H -0.298 1.298 14 H -0.300 1.300 15 C -0.149 4.149 16 C 0.099 3.901 17 N -0.598 5.598 18 C 0.562 3.438 19 O -0.576 6.576 20 C -0.156 4.156 21 C -0.055 4.055 22 C -0.075 4.075 23 C -0.123 4.123 24 C 0.311 3.689 25 F -0.211 7.211 26 F -0.210 7.210 27 C -0.129 4.129 28 C 0.116 3.884 29 F -0.144 7.144 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.177 0.823 40 H 0.201 0.799 41 H 0.182 0.818 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 -21.017 -21.696 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.057 0.943 4 C 0.063 3.937 5 H 0.101 0.899 6 N -0.369 5.369 7 C -0.363 4.363 8 H 0.106 0.894 9 C -0.271 4.271 10 N -0.625 5.625 11 Si 0.803 3.197 12 H -0.182 1.182 13 H -0.225 1.225 14 H -0.227 1.227 15 C -0.190 4.190 16 C -0.022 4.022 17 N -0.331 5.331 18 C 0.352 3.648 19 O -0.456 6.456 20 C -0.160 4.160 21 C -0.073 4.073 22 C -0.092 4.092 23 C -0.125 4.125 24 C 0.258 3.742 25 F -0.192 7.192 26 F -0.192 7.192 27 C -0.148 4.148 28 C 0.096 3.904 29 F -0.122 7.122 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.194 0.806 40 H 0.218 0.782 41 H 0.199 0.801 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.698 -20.503 -21.764 29.909 hybrid contribution 0.330 2.023 0.819 2.207 sum -0.368 -18.480 -20.946 27.935 Atomic orbital electron populations 1.21933 0.93834 1.02931 1.01486 1.21749 0.95139 0.95448 0.85137 0.94318 1.21462 0.95209 0.90996 0.86007 0.89928 1.42578 1.79588 1.12158 1.02607 1.19693 1.35747 0.97123 0.83787 0.89370 1.25610 1.03106 0.96101 1.02303 1.69852 1.53535 1.06073 1.33017 0.85065 0.76430 0.78055 0.80152 1.18156 1.22510 1.22722 1.23471 0.98779 1.01568 0.95203 1.22884 0.95937 0.88016 0.95362 1.48461 1.51662 1.29194 1.03738 1.18194 0.79474 0.84981 0.82151 1.90802 1.44453 1.26404 1.83943 1.20127 1.06059 0.96425 0.93364 1.21762 0.95294 0.88966 1.01266 1.21503 0.94870 1.03242 0.89596 1.20730 1.01195 0.92927 0.97609 1.21018 0.71990 1.01617 0.79538 1.93021 1.75907 1.96371 1.53920 1.93024 1.35658 1.96031 1.94460 1.21014 1.01218 0.93949 0.98615 1.17920 1.00595 0.77192 0.94731 1.91530 1.93981 1.30797 1.95918 0.90224 0.92164 0.93555 0.79938 0.94220 0.93185 0.88292 0.86732 0.88720 0.80613 0.78162 0.80122 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.11 71.98 0.66 -3.98 16 2 C 0.13 4.52 3.18 45.34 0.14 4.66 16 3 H 0.04 1.66 7.72 -2.39 -0.02 1.64 16 4 C 0.17 6.10 3.14 46.18 0.14 6.24 16 5 H 0.08 2.72 7.80 -2.39 -0.02 2.70 16 6 N -0.73 -34.99 5.22 -317.32 -1.66 -36.65 16 7 C -0.23 -12.02 9.96 84.03 0.84 -11.19 16 8 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 9 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 10 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 11 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 15 C -0.15 -4.18 6.78 32.07 0.22 -3.97 16 16 C 0.10 1.95 5.21 86.94 0.45 2.41 16 17 N -0.60 -17.14 3.06 -791.16 -2.42 -19.57 16 18 C 0.56 17.88 7.14 86.74 0.62 18.50 16 19 O -0.58 -23.90 15.37 -3.93 -0.06 -23.96 16 20 C -0.16 -3.62 5.42 -20.05 -0.11 -3.73 16 21 C -0.05 -0.65 8.17 22.52 0.18 -0.47 16 22 C -0.07 -0.44 9.65 22.23 0.21 -0.23 16 23 C -0.12 -1.33 5.38 -19.82 -0.11 -1.44 16 24 C 0.31 2.28 5.44 71.24 0.39 2.67 16 25 F -0.21 -2.73 17.25 44.97 0.78 -1.95 16 26 F -0.21 -2.73 17.25 44.97 0.78 -1.95 16 27 C -0.13 -2.34 9.55 22.28 0.21 -2.13 16 28 C 0.12 2.92 7.24 22.67 0.16 3.08 16 29 F -0.14 -4.70 16.15 44.97 0.73 -3.97 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.61 7.06 -2.39 -0.02 1.60 16 33 H 0.37 20.00 7.57 -92.70 -0.70 19.30 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.11 1.30 6.91 -2.39 -0.02 1.29 16 38 H 0.09 1.51 7.25 -2.39 -0.02 1.49 16 39 H 0.18 1.17 5.73 -2.91 -0.02 1.15 16 40 H 0.20 -0.95 7.94 -2.91 -0.02 -0.97 16 41 H 0.18 -0.60 7.87 -2.38 -0.02 -0.62 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -79.25 361.74 5.31 -73.94 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.38 Total: 20.07 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.49 Total: 6.48 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -3.80 Total: -115.25 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 2.28 Total: -7.87 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -79.25 5.31 -73.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987260400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.978 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds