Wall clock time and date at job start Wed Apr 1 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99826 * 2 1 4 4 C 1.54320 * 109.88064 * 121.10410 * 2 1 3 5 5 H 1.09013 * 110.86790 * 260.04196 * 4 2 1 6 6 N 1.46496 * 110.72302 * 23.24019 * 4 2 1 7 7 C 1.36939 * 120.00552 * 263.57617 * 6 4 2 8 8 H 1.07998 * 119.99527 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99954 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00496 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99647 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47019 * 179.97438 * 11 9 7 13 13 H 1.48491 * 109.47516 * 299.99869 * 11 9 7 14 14 H 1.48505 * 109.47039 * 60.00264 * 11 9 7 15 15 C 1.55153 * 102.94431 * 141.60943 * 4 2 1 16 16 C 1.54907 * 101.58158 * 324.49523 * 15 4 2 17 17 N 1.47032 * 109.88015 * 238.90582 * 2 1 3 18 18 C 1.34773 * 125.64827 * 61.67982 * 17 2 1 19 19 O 1.21561 * 119.99783 * 5.76055 * 18 17 2 20 20 C 1.47846 * 120.00113 * 185.75569 * 18 17 2 21 21 C 1.39593 * 120.14092 * 24.52972 * 20 18 17 22 22 C 1.37932 * 119.85338 * 179.97438 * 21 20 18 23 23 C 1.38386 * 120.14299 * 359.97171 * 22 21 20 24 24 C 1.38329 * 120.29413 * 0.02562 * 23 22 21 25 25 C 1.50695 * 119.92979 * 180.02562 * 24 23 22 26 26 F 1.39903 * 109.47105 * 0.02562 * 25 24 23 27 27 F 1.39905 * 109.47198 * 120.00252 * 25 24 23 28 28 F 1.39904 * 109.47459 * 239.99861 * 25 24 23 29 29 C 1.37984 * 120.14297 * 359.78894 * 24 23 22 30 30 H 1.08995 * 109.47354 * 303.82080 * 1 2 3 31 31 H 1.08997 * 109.47046 * 63.82636 * 1 2 3 32 32 H 1.09004 * 109.46933 * 183.82076 * 1 2 3 33 33 H 0.97006 * 119.99844 * 83.58034 * 6 4 2 34 34 H 0.96997 * 120.00119 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00462 * 82.57031 * 15 4 2 36 36 H 1.08998 * 111.00408 * 206.38082 * 15 4 2 37 37 H 1.09000 * 110.36797 * 155.85066 * 16 15 4 38 38 H 1.09002 * 110.36539 * 278.17074 * 16 15 4 39 39 H 1.08003 * 120.07719 * 359.94794 * 21 20 18 40 40 H 1.07997 * 119.92971 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.85282 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.07407 * 180.23461 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 2.3525 -0.0484 2.0223 6 7 1.0471 -1.6856 1.7473 7 6 0.2215 -1.3145 2.7749 8 1 0.3136 -0.3320 3.2135 9 6 -0.7328 -2.2016 3.2533 10 7 -0.8441 -3.3996 2.7197 11 14 -1.8585 -1.6956 4.6556 12 1 -2.7817 -2.8134 4.9772 13 1 -1.0423 -1.3673 5.8518 14 1 -2.6469 -0.5036 4.2519 15 6 3.2875 -1.5144 0.6922 16 6 2.8145 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8085 -0.3612 -2.4657 19 8 1.2343 0.6799 -2.7190 20 6 2.2640 -1.2403 -3.5638 21 6 2.4439 -2.6063 -3.3394 22 6 2.8685 -3.4210 -4.3682 23 6 3.1155 -2.8871 -5.6208 24 6 2.9391 -1.5343 -5.8498 25 6 3.2099 -0.9617 -7.2172 26 9 3.6236 -1.9844 -8.0775 27 9 2.0418 -0.3762 -7.7173 28 9 4.2150 0.0072 -7.1264 29 6 2.5111 -0.7089 -4.8303 30 1 -0.3634 0.5720 0.8537 31 1 -0.3633 0.4533 -0.9223 32 1 -0.3633 -1.0254 0.0685 33 1 0.9647 -2.5683 1.3535 34 1 -1.5113 -4.0194 3.0539 35 1 4.1654 -0.8690 0.6603 36 1 3.4855 -2.4108 1.2798 37 1 3.6716 -2.0338 -1.3924 38 1 2.1885 -2.7715 -0.7131 39 1 2.2515 -3.0242 -2.3623 40 1 3.0085 -4.4779 -4.1958 41 1 3.4474 -3.5294 -6.4231 42 1 2.3701 0.3464 -5.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987388206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:16 Heat of formation + Delta-G solvation = -130.546586 kcal Electronic energy + Delta-G solvation = -30053.624357 eV Core-core repulsion = 25391.475685 eV Total energy + Delta-G solvation = -4662.148672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.41721 -47.94995 -47.85559 -40.60233 -38.99751 -37.38993 -34.22696 -32.70766 -31.71668 -31.24558 -30.70301 -28.80909 -26.41159 -25.36912 -24.43783 -23.46452 -22.54847 -21.96818 -20.35467 -19.17941 -18.73041 -18.60121 -18.18504 -17.49333 -16.78497 -16.34493 -15.98055 -15.62767 -14.84034 -14.78800 -14.66614 -14.49775 -14.31502 -14.27225 -14.03412 -14.01859 -13.97912 -13.64913 -13.57241 -13.21491 -13.00130 -12.89466 -12.76399 -12.39322 -12.00924 -11.62236 -11.54841 -11.37400 -10.96378 -10.89889 -10.69381 -10.52471 -10.21850 -10.13616 -9.80718 -9.68641 -9.56296 -9.37237 -9.02274 -8.36311 -7.11678 -5.88695 -3.18426 0.44062 0.74270 2.35453 2.66340 3.09849 3.37987 3.43113 3.43349 3.43819 3.45116 3.75760 4.15595 4.34772 4.49400 4.50051 4.62855 4.74137 4.90613 4.98530 5.09662 5.20769 5.34453 5.46392 5.49262 5.56981 5.62290 5.74748 5.76688 5.89139 5.92658 6.01353 6.13741 6.18870 6.30282 6.36277 6.48274 6.58950 6.76495 6.93682 7.29714 7.60274 7.74178 8.27863 8.29981 9.41058 9.93284 10.28545 11.33197 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002504 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.575660 B =11178.393575 C =11375.498681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.108 3.892 3 H 0.063 0.937 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.708 5.708 7 C -0.242 4.242 8 H 0.071 0.929 9 C -0.007 4.007 10 N -0.931 5.931 11 Si 0.906 3.094 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.147 4.147 16 C 0.095 3.905 17 N -0.596 5.596 18 C 0.568 3.432 19 O -0.537 6.537 20 C -0.122 4.122 21 C -0.065 4.065 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.195 4.195 25 C 0.511 3.489 26 F -0.178 7.178 27 F -0.175 7.175 28 F -0.176 7.176 29 C -0.016 4.016 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.385 0.615 34 H 0.257 0.743 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.998 -0.313 -16.689 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.003 3.997 3 H 0.081 0.919 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.347 5.347 7 C -0.373 4.373 8 H 0.089 0.911 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.737 3.263 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.186 4.186 16 C -0.027 4.027 17 N -0.328 5.328 18 C 0.356 3.644 19 O -0.416 6.416 20 C -0.125 4.125 21 C -0.083 4.083 22 C -0.144 4.144 23 C -0.074 4.074 24 C -0.196 4.196 25 C 0.457 3.543 26 F -0.159 7.159 27 F -0.156 7.156 28 F -0.157 7.157 29 C -0.035 4.035 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.561 0.339 -16.735 20.343 hybrid contribution -0.709 -0.037 0.296 0.769 sum 10.852 0.302 -16.439 19.700 Atomic orbital electron populations 1.21812 0.93606 1.03897 1.00198 1.22797 0.96248 0.95624 0.85023 0.91925 1.21250 0.88421 0.92261 0.92298 0.90509 1.42328 1.37979 1.14443 1.39925 1.19147 1.10609 0.98787 1.08756 0.91063 1.24715 0.99692 0.96137 0.99850 1.69629 1.37430 1.06502 1.44248 0.86296 0.80571 0.77299 0.82179 1.21731 1.21219 1.21177 1.23198 0.98744 1.02002 0.94647 1.22613 0.94528 0.89112 0.96469 1.48496 1.51164 1.28320 1.04864 1.17732 0.79925 0.85270 0.81461 1.90777 1.42998 1.24511 1.83266 1.19989 1.03844 0.94444 0.94256 1.22238 0.92678 0.92535 1.00820 1.21180 1.00378 1.00780 0.92039 1.21196 0.94954 0.93022 0.98206 1.19864 1.10905 0.96116 0.92750 1.18218 0.74373 0.75840 0.85854 1.93161 1.90516 1.59449 1.72785 1.93239 1.48521 1.84805 1.89025 1.93229 1.61560 1.64487 1.96435 1.20920 0.91731 1.00481 0.90408 0.91792 0.94246 0.90652 0.78102 0.93352 0.90877 0.89281 0.91014 0.90737 0.83043 0.84000 0.84121 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.19 37.16 0.30 -2.44 16 2 C 0.11 1.89 3.41 -66.95 -0.23 1.67 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.17 2.96 3.52 -66.10 -0.23 2.72 16 5 H 0.08 1.33 8.06 -51.92 -0.42 0.92 16 6 N -0.71 -15.44 3.65 -51.66 -0.19 -15.63 16 7 C -0.24 -6.06 8.79 -15.06 -0.13 -6.19 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 10 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 11 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.15 -1.97 6.69 -24.59 -0.16 -2.13 16 16 C 0.10 1.21 4.92 -2.53 -0.01 1.20 16 17 N -0.60 -9.28 3.06 -164.12 -0.50 -9.78 16 18 C 0.57 9.28 7.38 -12.33 -0.09 9.19 16 19 O -0.54 -10.54 15.82 5.31 0.08 -10.46 16 20 C -0.12 -1.60 5.67 -104.97 -0.60 -2.19 16 21 C -0.06 -0.68 8.08 -39.19 -0.32 -1.00 16 22 C -0.13 -1.05 10.03 -39.64 -0.40 -1.44 16 23 C -0.06 -0.48 9.43 -39.49 -0.37 -0.85 16 24 C -0.19 -2.03 5.37 -104.68 -0.56 -2.60 16 25 C 0.51 5.26 3.31 36.00 0.12 5.38 16 26 F -0.18 -1.70 15.96 2.25 0.04 -1.66 16 27 F -0.17 -1.97 17.23 2.25 0.04 -1.93 16 28 F -0.18 -1.90 17.24 2.25 0.04 -1.86 16 29 C -0.02 -0.20 9.13 -39.19 -0.36 -0.56 16 30 H 0.06 1.32 7.80 -51.93 -0.41 0.91 16 31 H 0.04 0.80 6.97 -51.93 -0.36 0.43 16 32 H 0.07 1.69 7.08 -51.93 -0.37 1.32 16 33 H 0.38 8.95 7.84 -40.82 -0.32 8.63 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.73 6.83 -51.93 -0.35 0.38 16 38 H 0.07 0.96 6.83 -51.93 -0.35 0.60 16 39 H 0.15 1.51 4.60 -52.48 -0.24 1.27 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.14 0.90 7.14 -52.49 -0.37 0.53 16 42 H 0.14 1.79 7.84 -52.49 -0.41 1.38 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -29.58 355.95 -7.41 -36.99 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.85 Total: 7.59 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.14 Total: 0.47 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.03 Total: -50.79 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.58 -7.41 -36.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987388206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.556 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds