Wall clock time and date at job start Wed Apr 1 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99826 * 2 1 4 4 C 1.54320 * 109.88064 * 121.10410 * 2 1 3 5 5 H 1.09013 * 110.86790 * 260.04196 * 4 2 1 6 6 N 1.46496 * 110.72302 * 23.24019 * 4 2 1 7 7 C 1.36939 * 120.00552 * 263.57617 * 6 4 2 8 8 H 1.07998 * 119.99527 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99954 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00496 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99647 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47019 * 179.97438 * 11 9 7 13 13 H 1.48491 * 109.47516 * 299.99869 * 11 9 7 14 14 H 1.48505 * 109.47039 * 60.00264 * 11 9 7 15 15 C 1.55153 * 102.94431 * 141.60943 * 4 2 1 16 16 C 1.54907 * 101.58158 * 324.49523 * 15 4 2 17 17 N 1.47032 * 109.88015 * 238.90582 * 2 1 3 18 18 C 1.34773 * 125.64827 * 61.67982 * 17 2 1 19 19 O 1.21561 * 119.99783 * 5.76055 * 18 17 2 20 20 C 1.47846 * 120.00113 * 185.75569 * 18 17 2 21 21 C 1.39593 * 120.14092 * 24.52972 * 20 18 17 22 22 C 1.37932 * 119.85338 * 179.97438 * 21 20 18 23 23 C 1.38386 * 120.14299 * 359.97171 * 22 21 20 24 24 C 1.38329 * 120.29413 * 0.02562 * 23 22 21 25 25 C 1.50695 * 119.92979 * 180.02562 * 24 23 22 26 26 F 1.39903 * 109.47105 * 0.02562 * 25 24 23 27 27 F 1.39905 * 109.47198 * 120.00252 * 25 24 23 28 28 F 1.39904 * 109.47459 * 239.99861 * 25 24 23 29 29 C 1.37984 * 120.14297 * 359.78894 * 24 23 22 30 30 H 1.08995 * 109.47354 * 303.82080 * 1 2 3 31 31 H 1.08997 * 109.47046 * 63.82636 * 1 2 3 32 32 H 1.09004 * 109.46933 * 183.82076 * 1 2 3 33 33 H 0.97006 * 119.99844 * 83.58034 * 6 4 2 34 34 H 0.96997 * 120.00119 * 180.02562 * 10 9 7 35 35 H 1.09001 * 111.00462 * 82.57031 * 15 4 2 36 36 H 1.08998 * 111.00408 * 206.38082 * 15 4 2 37 37 H 1.09000 * 110.36797 * 155.85066 * 16 15 4 38 38 H 1.09002 * 110.36539 * 278.17074 * 16 15 4 39 39 H 1.08003 * 120.07719 * 359.94794 * 21 20 18 40 40 H 1.07997 * 119.92971 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.85282 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.07407 * 180.23461 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 2.3525 -0.0484 2.0223 6 7 1.0471 -1.6856 1.7473 7 6 0.2215 -1.3145 2.7749 8 1 0.3136 -0.3320 3.2135 9 6 -0.7328 -2.2016 3.2533 10 7 -0.8441 -3.3996 2.7197 11 14 -1.8585 -1.6956 4.6556 12 1 -2.7817 -2.8134 4.9772 13 1 -1.0423 -1.3673 5.8518 14 1 -2.6469 -0.5036 4.2519 15 6 3.2875 -1.5144 0.6922 16 6 2.8145 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8085 -0.3612 -2.4657 19 8 1.2343 0.6799 -2.7190 20 6 2.2640 -1.2403 -3.5638 21 6 2.4439 -2.6063 -3.3394 22 6 2.8685 -3.4210 -4.3682 23 6 3.1155 -2.8871 -5.6208 24 6 2.9391 -1.5343 -5.8498 25 6 3.2099 -0.9617 -7.2172 26 9 3.6236 -1.9844 -8.0775 27 9 2.0418 -0.3762 -7.7173 28 9 4.2150 0.0072 -7.1264 29 6 2.5111 -0.7089 -4.8303 30 1 -0.3634 0.5720 0.8537 31 1 -0.3633 0.4533 -0.9223 32 1 -0.3633 -1.0254 0.0685 33 1 0.9647 -2.5683 1.3535 34 1 -1.5113 -4.0194 3.0539 35 1 4.1654 -0.8690 0.6603 36 1 3.4855 -2.4108 1.2798 37 1 3.6716 -2.0338 -1.3924 38 1 2.1885 -2.7715 -0.7131 39 1 2.2515 -3.0242 -2.3623 40 1 3.0085 -4.4779 -4.1958 41 1 3.4474 -3.5294 -6.4231 42 1 2.3701 0.3464 -5.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987388206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:15 Heat of formation + Delta-G solvation = -146.803163 kcal Electronic energy + Delta-G solvation = -30054.329295 eV Core-core repulsion = 25391.475685 eV Total energy + Delta-G solvation = -4662.853610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.23666 -48.74689 -48.70563 -41.72986 -40.02307 -38.71321 -35.84892 -33.91441 -32.86198 -32.42876 -32.02192 -30.37640 -27.33064 -26.76209 -25.60156 -25.16594 -23.48202 -22.96787 -21.52940 -20.40184 -19.55889 -19.46969 -19.41172 -19.09785 -17.79149 -17.46558 -17.19065 -16.65105 -16.37826 -15.79651 -15.63110 -15.49489 -15.43278 -15.25274 -15.13611 -15.11366 -14.98322 -14.85881 -14.76902 -14.55107 -14.20090 -14.08479 -13.81813 -13.50479 -13.16828 -13.04182 -12.89939 -12.76694 -12.44549 -12.37879 -12.28956 -12.17709 -11.77457 -11.63892 -11.50948 -11.07249 -10.88853 -10.38266 -10.22773 -9.64824 -8.97924 -7.90411 -5.16745 -0.39487 -0.08311 1.50232 1.51684 1.52597 1.56351 1.63691 1.92880 2.47701 2.58790 2.62630 2.94122 3.32488 3.34050 3.45346 3.65958 3.72166 3.88855 3.92542 3.94731 4.06161 4.21267 4.25438 4.38049 4.45602 4.54033 4.57852 4.68432 4.72815 4.81536 4.95185 5.00084 5.09240 5.11881 5.16340 5.25478 5.29491 5.44852 5.53435 5.59987 5.60895 6.31329 6.51273 7.03538 7.40245 8.11899 8.36489 9.31991 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.002504 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.575660 B =11178.393575 C =11375.498681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.113 3.887 3 H 0.065 0.935 4 C 0.164 3.836 5 H 0.079 0.921 6 N -0.713 5.713 7 C -0.228 4.228 8 H 0.074 0.926 9 C -0.066 4.066 10 N -0.963 5.963 11 Si 0.958 3.042 12 H -0.300 1.300 13 H -0.278 1.278 14 H -0.286 1.286 15 C -0.133 4.133 16 C 0.096 3.904 17 N -0.596 5.596 18 C 0.562 3.438 19 O -0.583 6.583 20 C -0.142 4.142 21 C -0.064 4.064 22 C -0.111 4.111 23 C -0.043 4.043 24 C -0.199 4.199 25 C 0.514 3.486 26 F -0.170 7.170 27 F -0.183 7.183 28 F -0.181 7.181 29 C -0.028 4.028 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 -1.710 -17.571 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 H 0.083 0.917 4 C 0.053 3.947 5 H 0.097 0.903 6 N -0.352 5.352 7 C -0.360 4.360 8 H 0.092 0.908 9 C -0.259 4.259 10 N -0.614 5.614 11 Si 0.788 3.212 12 H -0.227 1.227 13 H -0.204 1.204 14 H -0.213 1.213 15 C -0.171 4.171 16 C -0.026 4.026 17 N -0.328 5.328 18 C 0.353 3.647 19 O -0.465 6.465 20 C -0.145 4.145 21 C -0.082 4.082 22 C -0.128 4.128 23 C -0.061 4.061 24 C -0.200 4.200 25 C 0.460 3.540 26 F -0.151 7.151 27 F -0.165 7.165 28 F -0.162 7.162 29 C -0.047 4.047 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.175 0.825 40 H 0.198 0.802 41 H 0.188 0.812 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.761 -1.039 -17.620 22.381 hybrid contribution -1.319 0.443 0.466 1.467 sum 12.442 -0.596 -17.154 21.199 Atomic orbital electron populations 1.21620 0.95833 1.01573 0.99044 1.22539 0.94286 0.96184 0.86271 0.91711 1.21442 0.89022 0.92142 0.92100 0.90301 1.42396 1.38636 1.14793 1.39345 1.19448 1.09882 0.98327 1.08297 0.90804 1.25317 1.01651 0.96564 1.02370 1.69752 1.38336 1.07402 1.45862 0.85448 0.79009 0.76381 0.80324 1.22695 1.20447 1.21289 1.23132 0.97452 1.02047 0.94499 1.22812 0.95284 0.87825 0.96662 1.48508 1.51156 1.28870 1.04237 1.18314 0.79092 0.85130 0.82201 1.90741 1.45065 1.26655 1.83991 1.19732 1.06271 0.95156 0.93296 1.22346 0.92468 0.91397 1.01951 1.21576 0.98205 1.02193 0.90867 1.21602 0.93042 0.92236 0.99210 1.19907 1.11065 0.96913 0.92118 1.18194 0.74002 0.75807 0.85975 1.93173 1.90395 1.58985 1.72561 1.93224 1.49069 1.85020 1.89155 1.93220 1.61712 1.64790 1.96466 1.20829 0.92786 1.00243 0.90880 0.93018 0.95291 0.93318 0.78995 0.94243 0.88233 0.88773 0.87549 0.90700 0.82470 0.80229 0.81227 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.19 71.98 0.59 -4.46 16 2 C 0.11 3.94 3.41 45.34 0.15 4.09 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.16 5.51 3.52 46.18 0.16 5.67 16 5 H 0.08 2.63 8.06 -2.38 -0.02 2.61 16 6 N -0.71 -30.97 3.65 -317.34 -1.16 -32.13 16 7 C -0.23 -11.40 8.79 84.03 0.74 -10.66 16 8 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 9 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 10 N -0.96 -54.88 13.06 21.65 0.28 -54.60 16 11 Si 0.96 44.27 29.55 68.60 2.03 46.30 16 12 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 15 C -0.13 -3.19 6.69 31.98 0.21 -2.98 16 16 C 0.10 2.18 4.92 86.86 0.43 2.61 16 17 N -0.60 -18.11 3.06 -791.43 -2.42 -20.54 16 18 C 0.56 18.45 7.38 86.79 0.64 19.09 16 19 O -0.58 -23.74 15.82 -3.91 -0.06 -23.80 16 20 C -0.14 -3.56 5.67 -20.09 -0.11 -3.67 16 21 C -0.06 -1.16 8.08 22.52 0.18 -0.97 16 22 C -0.11 -1.35 10.03 22.23 0.22 -1.13 16 23 C -0.04 -0.57 9.43 22.33 0.21 -0.36 16 24 C -0.20 -3.76 5.37 -19.90 -0.11 -3.86 16 25 C 0.51 9.82 3.31 71.23 0.24 10.05 16 26 F -0.17 -2.81 15.96 44.97 0.72 -2.09 16 27 F -0.18 -4.03 17.23 44.97 0.77 -3.25 16 28 F -0.18 -3.74 17.24 44.97 0.78 -2.96 16 29 C -0.03 -0.67 9.13 22.53 0.21 -0.47 16 30 H 0.05 2.19 7.80 -2.39 -0.02 2.17 16 31 H 0.03 1.21 6.97 -2.39 -0.02 1.20 16 32 H 0.05 2.25 7.08 -2.38 -0.02 2.23 16 33 H 0.38 17.55 7.84 -92.70 -0.73 16.82 16 34 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.11 1.75 6.83 -2.39 -0.02 1.74 16 38 H 0.08 1.75 6.83 -2.39 -0.02 1.74 16 39 H 0.16 2.67 4.60 -2.91 -0.01 2.65 16 40 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.17 1.31 7.14 -2.91 -0.02 1.29 16 42 H 0.13 3.36 7.84 -2.91 -0.02 3.33 16 Total: -1.00 -66.39 355.95 5.52 -60.87 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.36 Total: 22.32 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.23 Total: 9.87 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.30 Total: -107.26 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 2.27 Total: -8.30 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.39 5.52 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987388206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.932 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds