Wall clock time and date at job start Wed Apr 1 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.99718 * 2 1 4 4 C 1.54329 * 109.88152 * 121.09280 * 2 1 3 5 5 H 1.08992 * 110.71979 * 23.24928 * 4 2 1 6 6 N 1.46492 * 110.71788 * 259.97089 * 4 2 1 7 7 C 1.36941 * 119.99667 * 160.02438 * 6 4 2 8 8 H 1.08001 * 120.00191 * 0.02562 * 7 6 4 9 9 C 1.38818 * 120.00039 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99834 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99970 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46444 * 120.00198 * 11 9 7 14 14 H 1.48498 * 109.47349 * 240.00288 * 11 9 7 15 15 C 1.55154 * 102.93961 * 141.61178 * 4 2 1 16 16 C 1.54916 * 101.58476 * 324.49702 * 15 4 2 17 17 N 1.47023 * 109.88196 * 238.90260 * 2 1 3 18 18 C 1.34775 * 125.65029 * 61.67555 * 17 2 1 19 19 O 1.21559 * 119.99928 * 356.33654 * 18 17 2 20 20 C 1.47845 * 119.99976 * 176.32893 * 18 17 2 21 21 C 1.39593 * 120.14409 * 27.16526 * 20 18 17 22 22 C 1.37938 * 119.85364 * 179.97438 * 21 20 18 23 23 C 1.38380 * 120.14385 * 0.02562 * 22 21 20 24 24 C 1.38337 * 120.29487 * 359.97438 * 23 22 21 25 25 C 1.50700 * 119.92908 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47016 * 0.02562 * 25 24 23 27 27 F 1.39899 * 109.47010 * 120.00174 * 25 24 23 28 28 F 1.39898 * 109.47041 * 239.99977 * 25 24 23 29 29 C 1.37982 * 120.14101 * 359.74163 * 24 23 22 30 30 H 1.09000 * 109.47275 * 298.90373 * 1 2 3 31 31 H 1.09008 * 109.47260 * 58.90593 * 1 2 3 32 32 H 1.09003 * 109.47615 * 178.90593 * 1 2 3 33 33 H 0.96998 * 120.00632 * 340.03206 * 6 4 2 34 34 H 0.96998 * 119.99624 * 179.97438 * 10 9 7 35 35 H 1.08999 * 111.00740 * 206.42632 * 15 4 2 36 36 H 1.09001 * 111.00835 * 82.57185 * 15 4 2 37 37 H 1.08997 * 110.36991 * 155.85031 * 16 15 4 38 38 H 1.08998 * 110.36346 * 278.17613 * 16 15 4 39 39 H 1.08001 * 120.07075 * 359.95177 * 21 20 18 40 40 H 1.08001 * 119.92727 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.85254 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.06994 * 180.25473 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 1.3051 -1.4458 1.6183 6 7 2.4554 0.1961 2.2874 7 6 2.5575 -0.2224 3.5873 8 1 2.3430 -1.2498 3.8422 9 6 2.9366 0.6737 4.5774 10 7 3.1975 1.9258 4.2668 11 14 3.0750 0.1029 6.3506 12 1 2.7307 -1.3392 6.4347 13 1 4.4657 0.3081 6.8294 14 1 2.1394 0.8858 7.1972 15 6 3.2875 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3614 -2.4657 19 8 1.0893 0.5851 -2.7200 20 6 2.4402 -1.1256 -3.5624 21 6 2.7722 -2.4691 -3.3800 22 6 3.3609 -3.1765 -4.4075 23 6 3.6230 -2.5570 -5.6167 24 6 3.2966 -1.2258 -5.8041 25 6 3.5863 -0.5592 -7.1242 26 9 4.1805 -1.4817 -7.9920 27 9 2.3912 -0.0953 -7.6845 28 9 4.4554 0.5182 -6.9217 29 6 2.7019 -0.5084 -4.7864 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5308 -0.8801 32 1 -0.3634 -1.0275 -0.0196 33 1 2.6483 1.1188 2.0585 34 1 3.4620 2.5521 4.9586 35 1 3.4852 -2.4110 1.2796 36 1 4.1654 -0.8688 0.6604 37 1 3.6716 -2.0339 -1.3922 38 1 2.1886 -2.7715 -0.7127 39 1 2.5688 -2.9535 -2.4364 40 1 3.6179 -4.2162 -4.2678 41 1 4.0838 -3.1155 -6.4182 42 1 2.4438 0.5297 -4.9353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987388207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:21 Heat of formation + Delta-G solvation = -132.574485 kcal Electronic energy + Delta-G solvation = -29633.106928 eV Core-core repulsion = 24970.870320 eV Total energy + Delta-G solvation = -4662.236608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.46535 -47.99864 -47.90131 -40.73706 -39.07288 -37.43032 -34.34659 -32.90429 -31.84216 -31.27833 -30.88106 -29.12371 -26.51642 -25.31295 -24.60838 -23.30187 -22.54716 -22.04191 -20.45443 -19.65605 -18.77574 -18.66911 -18.32315 -17.34184 -16.93221 -16.41500 -16.12305 -15.72055 -14.92968 -14.84519 -14.75568 -14.62202 -14.38909 -14.35828 -14.13883 -14.07200 -13.98206 -13.69745 -13.49236 -13.27398 -13.08460 -13.01875 -12.79316 -12.27990 -12.16679 -11.95132 -11.81381 -11.43951 -11.20163 -11.10021 -10.87981 -10.66343 -10.32666 -10.10669 -9.88378 -9.74986 -9.66660 -9.47828 -9.00721 -8.55798 -7.09502 -5.87022 -3.17957 0.33654 0.64363 2.28938 2.54233 2.89851 3.31267 3.37115 3.37803 3.42742 3.45287 3.69280 4.10188 4.21232 4.39612 4.49041 4.51682 4.63476 4.87170 4.90502 5.00110 5.18332 5.23094 5.35246 5.36495 5.43716 5.57045 5.64865 5.68964 5.75279 5.79311 5.84873 5.99090 6.04669 6.19527 6.21722 6.36400 6.49164 6.54408 6.62510 6.83752 7.56051 7.60888 8.12861 8.30035 9.41762 9.95431 10.29918 11.35090 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.002282 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.875764 B =12265.878861 C =12448.854407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.088 3.912 17 N -0.600 5.600 18 C 0.569 3.431 19 O -0.533 6.533 20 C -0.121 4.121 21 C -0.069 4.069 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.193 4.193 25 C 0.511 3.489 26 F -0.178 7.178 27 F -0.175 7.175 28 F -0.174 7.174 29 C -0.015 4.015 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -11.983 -21.617 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.035 4.035 17 N -0.333 5.333 18 C 0.357 3.643 19 O -0.411 6.411 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.073 4.073 24 C -0.194 4.194 25 C 0.457 3.543 26 F -0.159 7.159 27 F -0.156 7.156 28 F -0.156 7.156 29 C -0.034 4.034 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.563 -11.485 -21.648 24.513 hybrid contribution 0.366 0.115 0.653 0.757 sum 0.929 -11.370 -20.995 23.894 Atomic orbital electron populations 1.22062 0.94594 1.01726 1.02953 1.21980 0.94643 0.96958 0.84020 0.90176 1.21241 0.93494 0.91647 0.87102 0.91613 1.42351 1.80906 1.09114 1.03139 1.19228 1.39392 0.95169 0.83756 0.90916 1.24779 1.01996 0.95630 0.98210 1.69673 1.52411 1.02989 1.32528 0.86111 0.77309 0.77704 0.84971 1.20483 1.21810 1.21779 1.23626 1.01592 1.01945 0.92681 1.22787 0.94748 0.88304 0.97686 1.48440 1.51510 1.28531 1.04770 1.17734 0.81350 0.83857 0.81325 1.90792 1.38031 1.29142 1.83117 1.19915 1.02996 0.94919 0.94631 1.22227 0.93219 0.93199 1.00035 1.21163 1.00035 1.00817 0.92407 1.21208 0.95329 0.92483 0.98285 1.19883 1.09119 0.96565 0.93854 1.18204 0.74448 0.76696 0.84966 1.93161 1.84314 1.66170 1.72243 1.93238 1.46272 1.89247 1.86828 1.93240 1.70297 1.56962 1.95054 1.20929 0.91735 1.00500 0.90220 0.90982 0.91773 0.93036 0.77939 0.93362 0.90336 0.90427 0.90560 0.91149 0.83063 0.84017 0.84052 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.09 37.16 0.34 -2.15 16 2 C 0.13 2.14 3.23 -66.95 -0.22 1.92 16 3 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 4 C 0.18 3.18 3.12 -66.10 -0.21 2.98 16 5 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 6 N -0.71 -16.69 5.25 -51.66 -0.27 -16.96 16 7 C -0.24 -6.35 9.98 -15.06 -0.15 -6.50 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 11 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C -0.16 -2.35 6.77 -24.58 -0.17 -2.52 16 16 C 0.09 1.01 5.02 -2.52 -0.01 1.00 16 17 N -0.60 -8.66 3.06 -164.11 -0.50 -9.16 16 18 C 0.57 8.54 7.46 -12.33 -0.09 8.45 16 19 O -0.53 -9.74 15.58 5.31 0.08 -9.66 16 20 C -0.12 -1.43 5.70 -104.97 -0.60 -2.03 16 21 C -0.07 -0.60 7.94 -39.19 -0.31 -0.91 16 22 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 23 C -0.05 -0.41 9.43 -39.49 -0.37 -0.78 16 24 C -0.19 -1.85 5.37 -104.68 -0.56 -2.42 16 25 C 0.51 4.98 3.31 36.01 0.12 5.09 16 26 F -0.18 -1.59 15.96 2.25 0.04 -1.56 16 27 F -0.17 -1.85 17.23 2.25 0.04 -1.81 16 28 F -0.17 -1.86 17.24 2.25 0.04 -1.82 16 29 C -0.01 -0.17 9.14 -39.18 -0.36 -0.53 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.07 6.79 -51.92 -0.35 0.72 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.39 9.81 7.51 -40.82 -0.31 9.51 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.08 0.74 6.16 -51.93 -0.32 0.42 16 38 H 0.07 0.65 7.29 -51.93 -0.38 0.28 16 39 H 0.15 1.10 4.56 -52.49 -0.24 0.86 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.77 7.14 -52.48 -0.37 0.39 16 42 H 0.14 1.70 7.88 -52.48 -0.41 1.29 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -30.69 358.94 -7.40 -38.09 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.85 Total: 7.40 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -3.08 Total: 0.00 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.05 Total: -52.50 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.11 Total: -5.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.69 -7.40 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987388207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.487 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds