Wall clock time and date at job start Wed Apr 1 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.99718 * 2 1 4 4 C 1.54329 * 109.88152 * 121.09280 * 2 1 3 5 5 H 1.08992 * 110.71979 * 23.24928 * 4 2 1 6 6 N 1.46492 * 110.71788 * 259.97089 * 4 2 1 7 7 C 1.36941 * 119.99667 * 160.02438 * 6 4 2 8 8 H 1.08001 * 120.00191 * 0.02562 * 7 6 4 9 9 C 1.38818 * 120.00039 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99834 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99970 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46444 * 120.00198 * 11 9 7 14 14 H 1.48498 * 109.47349 * 240.00288 * 11 9 7 15 15 C 1.55154 * 102.93961 * 141.61178 * 4 2 1 16 16 C 1.54916 * 101.58476 * 324.49702 * 15 4 2 17 17 N 1.47023 * 109.88196 * 238.90260 * 2 1 3 18 18 C 1.34775 * 125.65029 * 61.67555 * 17 2 1 19 19 O 1.21559 * 119.99928 * 356.33654 * 18 17 2 20 20 C 1.47845 * 119.99976 * 176.32893 * 18 17 2 21 21 C 1.39593 * 120.14409 * 27.16526 * 20 18 17 22 22 C 1.37938 * 119.85364 * 179.97438 * 21 20 18 23 23 C 1.38380 * 120.14385 * 0.02562 * 22 21 20 24 24 C 1.38337 * 120.29487 * 359.97438 * 23 22 21 25 25 C 1.50700 * 119.92908 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47016 * 0.02562 * 25 24 23 27 27 F 1.39899 * 109.47010 * 120.00174 * 25 24 23 28 28 F 1.39898 * 109.47041 * 239.99977 * 25 24 23 29 29 C 1.37982 * 120.14101 * 359.74163 * 24 23 22 30 30 H 1.09000 * 109.47275 * 298.90373 * 1 2 3 31 31 H 1.09008 * 109.47260 * 58.90593 * 1 2 3 32 32 H 1.09003 * 109.47615 * 178.90593 * 1 2 3 33 33 H 0.96998 * 120.00632 * 340.03206 * 6 4 2 34 34 H 0.96998 * 119.99624 * 179.97438 * 10 9 7 35 35 H 1.08999 * 111.00740 * 206.42632 * 15 4 2 36 36 H 1.09001 * 111.00835 * 82.57185 * 15 4 2 37 37 H 1.08997 * 110.36991 * 155.85031 * 16 15 4 38 38 H 1.08998 * 110.36346 * 278.17613 * 16 15 4 39 39 H 1.08001 * 120.07075 * 359.95177 * 21 20 18 40 40 H 1.08001 * 119.92727 * 180.02562 * 22 21 20 41 41 H 1.08003 * 119.85254 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.06994 * 180.25473 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 1.3051 -1.4458 1.6183 6 7 2.4554 0.1961 2.2874 7 6 2.5575 -0.2224 3.5873 8 1 2.3430 -1.2498 3.8422 9 6 2.9366 0.6737 4.5774 10 7 3.1975 1.9258 4.2668 11 14 3.0750 0.1029 6.3506 12 1 2.7307 -1.3392 6.4347 13 1 4.4657 0.3081 6.8294 14 1 2.1394 0.8858 7.1972 15 6 3.2875 -1.5142 0.6925 16 6 2.8145 -1.8795 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8085 -0.3614 -2.4657 19 8 1.0893 0.5851 -2.7200 20 6 2.4402 -1.1256 -3.5624 21 6 2.7722 -2.4691 -3.3800 22 6 3.3609 -3.1765 -4.4075 23 6 3.6230 -2.5570 -5.6167 24 6 3.2966 -1.2258 -5.8041 25 6 3.5863 -0.5592 -7.1242 26 9 4.1805 -1.4817 -7.9920 27 9 2.3912 -0.0953 -7.6845 28 9 4.4554 0.5182 -6.9217 29 6 2.7019 -0.5084 -4.7864 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5308 -0.8801 32 1 -0.3634 -1.0275 -0.0196 33 1 2.6483 1.1188 2.0585 34 1 3.4620 2.5521 4.9586 35 1 3.4852 -2.4110 1.2796 36 1 4.1654 -0.8688 0.6604 37 1 3.6716 -2.0339 -1.3922 38 1 2.1886 -2.7715 -0.7127 39 1 2.5688 -2.9535 -2.4364 40 1 3.6179 -4.2162 -4.2678 41 1 4.0838 -3.1155 -6.4182 42 1 2.4438 0.5297 -4.9353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987388207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:20 Heat of formation + Delta-G solvation = -150.664144 kcal Electronic energy + Delta-G solvation = -29633.891355 eV Core-core repulsion = 24970.870320 eV Total energy + Delta-G solvation = -4663.021034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.24542 -48.75597 -48.71742 -41.77162 -40.00021 -38.69405 -36.00230 -34.04045 -32.92554 -32.48419 -32.02018 -30.63790 -27.34559 -26.79674 -25.59911 -24.87850 -23.47245 -22.96631 -21.72552 -20.78894 -19.56721 -19.46952 -19.34377 -19.07684 -17.90992 -17.41741 -17.16295 -16.74970 -16.45210 -15.83151 -15.64604 -15.57476 -15.44913 -15.30398 -15.14533 -15.06381 -14.88180 -14.86837 -14.72146 -14.57460 -14.12889 -14.00694 -13.84080 -13.57539 -13.26598 -13.13770 -12.96091 -12.89399 -12.64451 -12.53228 -12.25340 -12.08442 -12.05097 -11.68225 -11.54936 -11.07101 -10.89699 -10.36401 -10.23063 -9.73647 -9.01877 -7.93211 -5.23205 -0.38347 -0.07835 1.48351 1.50773 1.51137 1.60874 1.62414 1.81302 2.47185 2.58242 2.62641 2.93263 3.28478 3.32715 3.41518 3.64546 3.72269 3.76160 3.92497 3.97858 4.02489 4.17089 4.22464 4.32187 4.38123 4.42667 4.53941 4.63938 4.66359 4.71247 4.90981 4.95275 5.03355 5.09926 5.15648 5.21547 5.24668 5.30255 5.46123 5.56760 5.60669 6.27054 6.43563 6.97891 7.33579 8.05641 8.28783 9.30620 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.002282 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.875764 B =12265.878861 C =12448.854407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.044 0.956 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.731 5.731 7 C -0.232 4.232 8 H 0.086 0.914 9 C -0.078 4.078 10 N -0.973 5.973 11 Si 0.972 3.028 12 H -0.259 1.259 13 H -0.297 1.297 14 H -0.299 1.299 15 C -0.149 4.149 16 C 0.093 3.907 17 N -0.600 5.600 18 C 0.565 3.435 19 O -0.580 6.580 20 C -0.141 4.141 21 C -0.062 4.062 22 C -0.109 4.109 23 C -0.045 4.045 24 C -0.199 4.199 25 C 0.512 3.488 26 F -0.170 7.170 27 F -0.183 7.183 28 F -0.183 7.183 29 C -0.032 4.032 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.169 0.831 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -16.576 -22.570 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.063 0.937 4 C 0.062 3.938 5 H 0.093 0.907 6 N -0.370 5.370 7 C -0.363 4.363 8 H 0.104 0.896 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.802 3.198 12 H -0.183 1.183 13 H -0.225 1.225 14 H -0.227 1.227 15 C -0.190 4.190 16 C -0.028 4.028 17 N -0.332 5.332 18 C 0.355 3.645 19 O -0.461 6.461 20 C -0.144 4.144 21 C -0.080 4.080 22 C -0.126 4.126 23 C -0.063 4.063 24 C -0.201 4.201 25 C 0.458 3.542 26 F -0.151 7.151 27 F -0.164 7.164 28 F -0.165 7.165 29 C -0.052 4.052 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.189 0.811 40 H 0.203 0.797 41 H 0.186 0.814 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.252 -16.164 -22.636 27.843 hybrid contribution 0.147 1.488 0.804 1.697 sum 1.399 -14.676 -21.832 26.344 Atomic orbital electron populations 1.21952 0.94038 1.02676 1.01667 1.21678 0.95022 0.95453 0.85047 0.93749 1.21452 0.95138 0.91066 0.86186 0.90696 1.42550 1.81305 1.09357 1.03781 1.19658 1.36575 0.95402 0.84700 0.89575 1.25585 1.03351 0.95868 1.02186 1.69842 1.54964 1.04284 1.33241 0.85084 0.76434 0.78083 0.80214 1.18318 1.22468 1.22688 1.23436 0.98873 1.01548 0.95129 1.23037 0.96073 0.88149 0.95554 1.48448 1.51596 1.29124 1.03994 1.18327 0.80715 0.83469 0.81950 1.90761 1.40170 1.31328 1.83819 1.19672 1.05033 0.96304 0.93433 1.22451 0.92435 0.91523 1.01547 1.21633 0.97724 1.02383 0.90886 1.21634 0.93835 0.91328 0.99510 1.19898 1.09544 0.97589 0.93021 1.18261 0.74067 0.76566 0.85312 1.93171 1.84143 1.65739 1.72055 1.93220 1.46796 1.89407 1.87003 1.93222 1.70564 1.57565 1.95127 1.20819 0.93166 1.00065 0.91116 0.92265 0.93028 0.90846 0.79815 0.94203 0.88539 0.92763 0.87788 0.87179 0.81061 0.79667 0.81358 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.09 71.98 0.65 -4.06 16 2 C 0.13 4.52 3.23 45.34 0.15 4.67 16 3 H 0.04 1.83 7.69 -2.39 -0.02 1.81 16 4 C 0.17 6.02 3.12 46.18 0.14 6.17 16 5 H 0.08 2.53 7.83 -2.39 -0.02 2.51 16 6 N -0.73 -34.72 5.25 -317.34 -1.67 -36.39 16 7 C -0.23 -11.99 9.98 84.03 0.84 -11.15 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -58.72 13.06 21.65 0.28 -58.43 16 11 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 15 C -0.15 -4.13 6.77 31.99 0.22 -3.91 16 16 C 0.09 1.81 5.02 86.86 0.44 2.24 16 17 N -0.60 -16.71 3.06 -791.41 -2.43 -19.13 16 18 C 0.56 16.97 7.46 86.79 0.65 17.61 16 19 O -0.58 -22.31 15.58 -3.90 -0.06 -22.37 16 20 C -0.14 -3.12 5.70 -20.09 -0.11 -3.24 16 21 C -0.06 -0.80 7.94 22.53 0.18 -0.62 16 22 C -0.11 -0.87 10.03 22.23 0.22 -0.65 16 23 C -0.05 -0.49 9.43 22.33 0.21 -0.28 16 24 C -0.20 -3.49 5.37 -19.90 -0.11 -3.60 16 25 C 0.51 9.49 3.31 71.24 0.24 9.73 16 26 F -0.17 -2.68 15.96 44.97 0.72 -1.97 16 27 F -0.18 -3.85 17.23 44.97 0.77 -3.08 16 28 F -0.18 -3.91 17.24 44.97 0.78 -3.13 16 29 C -0.03 -0.73 9.14 22.53 0.21 -0.53 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.80 6.79 -2.38 -0.02 1.78 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.37 19.74 7.51 -92.71 -0.70 19.05 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.10 1.53 6.16 -2.39 -0.01 1.51 16 38 H 0.11 1.38 7.29 -2.39 -0.02 1.36 16 39 H 0.17 1.48 4.56 -2.91 -0.01 1.46 16 40 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.17 0.95 7.14 -2.91 -0.02 0.93 16 42 H 0.12 3.18 7.88 -2.91 -0.02 3.16 16 Total: -1.00 -71.41 358.94 5.20 -66.21 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.39 Total: 23.26 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.38 Total: 8.55 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.81 Total: -113.95 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 2.27 Total: -8.18 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.41 5.20 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987388207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.452 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds