Wall clock time and date at job start Wed Apr 1 2020 02:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.87159 * 2 1 4 4 C 1.54363 * 110.03055 * 121.06965 * 2 1 3 5 5 H 1.08998 * 110.75638 * 260.01416 * 4 2 1 6 6 N 1.46502 * 110.71002 * 23.30154 * 4 2 1 7 7 C 1.36930 * 120.00471 * 202.84475 * 6 4 2 8 8 H 1.08005 * 119.99890 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00062 * 179.97438 * 7 6 4 10 10 N 1.31613 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47120 * 60.00108 * 11 9 7 13 13 H 1.48499 * 109.46947 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47051 * 300.00334 * 11 9 7 15 15 C 1.55151 * 102.92251 * 141.64862 * 4 2 1 16 16 C 1.54913 * 101.61492 * 324.54455 * 15 4 2 17 17 N 1.47025 * 109.87896 * 238.98601 * 2 1 3 18 18 C 1.34772 * 125.64788 * 61.45025 * 17 2 1 19 19 O 1.21548 * 120.00391 * 356.79857 * 18 17 2 20 20 C 1.47850 * 120.00058 * 176.79399 * 18 17 2 21 21 C 1.39570 * 120.14665 * 206.22940 * 20 18 17 22 22 C 1.37966 * 119.85072 * 179.79529 * 21 20 18 23 23 C 1.38363 * 120.14403 * 0.48393 * 22 21 20 24 24 C 1.50703 * 119.85120 * 179.72596 * 23 22 21 25 25 F 1.39898 * 109.46650 * 270.02047 * 24 23 22 26 26 F 1.39906 * 109.47176 * 30.02001 * 24 23 22 27 27 F 1.39899 * 109.46865 * 150.02127 * 24 23 22 28 28 C 1.38353 * 120.29045 * 359.74638 * 23 22 21 29 29 C 1.37959 * 120.15147 * 0.02562 * 28 23 22 30 30 H 1.08999 * 109.46912 * 173.43165 * 1 2 3 31 31 H 1.08997 * 109.46763 * 293.42930 * 1 2 3 32 32 H 1.09002 * 109.47183 * 53.42818 * 1 2 3 33 33 H 0.97002 * 119.99754 * 22.84293 * 6 4 2 34 34 H 0.97006 * 119.99723 * 180.02562 * 10 9 7 35 35 H 1.08997 * 111.00866 * 206.45172 * 15 4 2 36 36 H 1.09005 * 111.00847 * 82.63578 * 15 4 2 37 37 H 1.09006 * 110.36529 * 155.83144 * 16 15 4 38 38 H 1.08996 * 110.36389 * 278.14705 * 16 15 4 39 39 H 1.07995 * 120.07827 * 0.02562 * 21 20 18 40 40 H 1.07999 * 119.92749 * 180.23285 * 22 21 20 41 41 H 1.08005 * 119.92226 * 180.02562 * 28 23 22 42 42 H 1.07995 * 120.08024 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0588 -0.7484 1.2422 5 1 2.3571 -0.0447 2.0192 6 7 1.0538 -1.6864 1.7486 7 6 1.0965 -2.0968 3.0543 8 1 1.8714 -1.7293 3.7107 9 6 0.1439 -2.9851 3.5342 10 7 -0.8007 -3.4326 2.7343 11 14 0.2027 -3.5455 5.3152 12 1 0.0767 -2.3667 6.2095 13 1 -0.9162 -4.4866 5.5752 14 1 1.4948 -4.2291 5.5767 15 6 3.2918 -1.5107 0.6893 16 6 2.8176 -1.8762 -0.7395 17 7 2.0300 -0.7124 -1.1850 18 6 1.8048 -0.3602 -2.4662 19 8 1.0891 0.5891 -2.7189 20 6 2.4286 -1.1286 -3.5647 21 6 2.6757 -0.5178 -4.7951 22 6 3.2619 -1.2393 -5.8145 23 6 3.5955 -2.5683 -5.6223 24 6 4.2299 -3.3520 -6.7424 25 9 3.2307 -3.9555 -7.5134 26 9 4.9828 -2.4896 -7.5468 27 9 5.0652 -4.3381 -6.2067 28 6 3.3489 -3.1810 -4.4066 29 6 2.7675 -2.4696 -3.3774 30 1 -0.3633 -1.0209 -0.1176 31 1 -0.3633 0.4086 0.9429 32 1 -0.3634 0.6123 -0.8253 33 1 0.3580 -2.0168 1.1590 34 1 -1.4666 -4.0531 3.0698 35 1 3.4921 -2.4074 1.2757 36 1 4.1686 -0.8640 0.6564 37 1 3.6742 -2.0285 -1.3962 38 1 2.1937 -2.7697 -0.7151 39 1 2.4120 0.5183 -4.9477 40 1 3.4570 -0.7669 -6.7658 41 1 3.6121 -4.2186 -4.2630 42 1 2.5751 -2.9491 -2.4291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987395281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:38 Heat of formation + Delta-G solvation = -143.601292 kcal Electronic energy + Delta-G solvation = -29856.783683 eV Core-core repulsion = 25194.068917 eV Total energy + Delta-G solvation = -4662.714766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 10.73 seconds Orbital eigenvalues (eV) -51.20615 -48.71446 -48.67465 -41.78724 -40.05327 -38.74380 -35.83954 -34.00305 -32.89623 -32.39529 -32.01049 -30.52852 -27.58783 -26.89184 -25.54663 -24.57775 -23.94402 -22.92408 -21.43049 -20.27823 -19.53350 -19.51615 -19.40734 -19.30919 -18.31952 -17.69193 -16.74581 -16.53237 -16.00443 -15.88671 -15.65138 -15.58245 -15.49407 -15.34126 -15.12032 -14.96026 -14.85305 -14.82024 -14.72449 -14.48467 -14.32814 -13.99030 -13.84924 -13.82124 -13.24228 -12.98290 -12.84309 -12.79308 -12.54935 -12.47124 -12.33660 -12.11181 -12.05489 -11.58813 -11.47074 -11.02688 -10.89345 -10.40832 -10.20516 -9.71943 -8.97888 -7.90277 -5.18266 -0.60426 0.13446 1.51978 1.53202 1.54027 1.56942 1.59048 1.84487 2.45650 2.59416 2.63010 2.95426 3.28189 3.36180 3.43358 3.62494 3.73984 3.78452 3.87729 3.94070 4.08338 4.20050 4.25148 4.28728 4.35988 4.44698 4.56034 4.66418 4.79164 4.82261 4.90892 4.93125 4.99041 5.05415 5.12654 5.20617 5.33415 5.35311 5.43616 5.53166 5.59158 6.30895 6.44659 6.98439 7.38887 8.12340 8.35932 9.32621 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002571 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.590562 B =10889.178530 C =11755.083992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.131 3.869 3 H 0.086 0.914 4 C 0.164 3.836 5 H 0.075 0.925 6 N -0.724 5.724 7 C -0.234 4.234 8 H 0.081 0.919 9 C -0.072 4.072 10 N -0.969 5.969 11 Si 0.967 3.033 12 H -0.281 1.281 13 H -0.303 1.303 14 H -0.277 1.277 15 C -0.149 4.149 16 C 0.098 3.902 17 N -0.598 5.598 18 C 0.563 3.437 19 O -0.570 6.570 20 C -0.105 4.105 21 C -0.069 4.069 22 C -0.071 4.071 23 C -0.168 4.168 24 C 0.514 3.486 25 F -0.179 7.179 26 F -0.175 7.175 27 F -0.176 7.176 28 C -0.072 4.072 29 C -0.101 4.101 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.148 0.852 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.714 2.150 -18.356 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.054 3.946 5 H 0.093 0.907 6 N -0.366 5.366 7 C -0.366 4.366 8 H 0.099 0.901 9 C -0.264 4.264 10 N -0.619 5.619 11 Si 0.797 3.203 12 H -0.208 1.208 13 H -0.230 1.230 14 H -0.203 1.203 15 C -0.190 4.190 16 C -0.024 4.024 17 N -0.330 5.330 18 C 0.353 3.647 19 O -0.451 6.451 20 C -0.108 4.108 21 C -0.088 4.088 22 C -0.089 4.089 23 C -0.170 4.170 24 C 0.460 3.540 25 F -0.161 7.161 26 F -0.157 7.157 27 F -0.157 7.157 28 C -0.090 4.090 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.166 0.834 40 H 0.182 0.818 41 H 0.179 0.821 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.387 2.629 -18.383 22.892 hybrid contribution -0.733 -0.734 0.732 1.270 sum 12.653 1.895 -17.651 21.801 Atomic orbital electron populations 1.21754 0.95525 1.00844 1.01272 1.21917 0.94250 0.96376 0.84693 0.89623 1.21430 0.89319 0.91332 0.92552 0.90721 1.42647 1.32318 1.52176 1.09417 1.19571 1.09090 1.19620 0.88331 0.90133 1.25452 0.98144 1.01371 1.01426 1.69803 1.18357 1.37425 1.36329 0.85303 0.76653 0.77517 0.80789 1.20775 1.22970 1.20269 1.23420 0.98720 1.02072 0.94748 1.22784 0.95227 0.87658 0.96685 1.48572 1.51147 1.28764 1.04479 1.18295 0.80788 0.83700 0.81904 1.90749 1.39714 1.30923 1.83754 1.20115 1.00899 0.95240 0.94561 1.21301 0.95682 1.01297 0.90483 1.21106 0.95501 0.91899 1.00415 1.20295 1.05882 0.96101 0.94710 1.18210 0.76307 0.77674 0.81856 1.93237 1.61206 1.84421 1.77191 1.93202 1.77273 1.69755 1.75437 1.93205 1.72811 1.63790 1.85910 1.21135 0.95858 1.01449 0.90588 1.22037 0.96211 0.92822 1.00842 0.94218 0.92188 0.92916 0.78876 0.94265 0.90261 0.88954 0.87530 0.91537 0.83420 0.81807 0.82069 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.19 71.98 0.59 -4.47 16 2 C 0.13 4.27 3.44 45.36 0.16 4.43 16 3 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.16 5.63 3.48 46.19 0.16 5.79 16 5 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 6 N -0.72 -32.68 4.60 -317.28 -1.46 -34.14 16 7 C -0.23 -11.86 9.97 84.03 0.84 -11.02 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 10 N -0.97 -56.69 13.06 21.65 0.28 -56.41 16 11 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 15 C -0.15 -4.08 6.77 31.99 0.22 -3.86 16 16 C 0.10 2.46 4.99 86.86 0.43 2.90 16 17 N -0.60 -17.50 3.07 -791.36 -2.43 -19.93 16 18 C 0.56 16.98 7.47 86.79 0.65 17.62 16 19 O -0.57 -20.81 15.66 -3.87 -0.06 -20.87 16 20 C -0.11 -2.45 5.71 -20.09 -0.11 -2.56 16 21 C -0.07 -1.35 9.59 22.53 0.22 -1.13 16 22 C -0.07 -1.12 9.38 22.23 0.21 -0.91 16 23 C -0.17 -2.74 5.46 -19.81 -0.11 -2.85 16 24 C 0.51 8.24 3.36 71.24 0.24 8.48 16 25 F -0.18 -3.19 17.30 44.97 0.78 -2.41 16 26 F -0.18 -2.79 16.45 44.97 0.74 -2.05 16 27 F -0.18 -2.91 16.45 44.97 0.74 -2.17 16 28 C -0.07 -1.18 9.38 22.23 0.21 -0.97 16 29 C -0.10 -1.96 7.95 22.53 0.18 -1.78 16 30 H 0.04 1.65 6.56 -2.39 -0.02 1.63 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.96 6.98 -2.39 -0.02 1.95 16 33 H 0.38 18.77 5.73 -92.71 -0.53 18.24 16 34 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.11 2.01 6.16 -2.38 -0.01 1.99 16 38 H 0.07 1.86 7.28 -2.39 -0.02 1.84 16 39 H 0.15 2.78 7.87 -2.91 -0.02 2.76 16 40 H 0.16 1.77 7.59 -2.91 -0.02 1.75 16 41 H 0.16 1.97 7.59 -2.91 -0.02 1.94 16 42 H 0.16 2.98 4.51 -2.91 -0.01 2.96 16 Total: -1.00 -63.51 355.18 5.51 -58.00 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.55 Total: 27.69 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.34 Total: 6.27 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -3.60 Total: -110.48 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 2.26 Total: -6.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -63.51 5.51 -58.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987395281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.602 kcal (2) G-P(sol) polarization free energy of solvation -63.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.73 seconds