Wall clock time and date at job start Wed Apr 1 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99661 * 2 1 4 4 C 1.54327 * 109.88012 * 121.09343 * 2 1 3 5 5 C 1.55156 * 102.93923 * 141.61162 * 4 2 1 6 6 H 1.09004 * 111.00488 * 82.57519 * 5 4 2 7 7 N 1.46501 * 111.00422 * 206.38506 * 5 4 2 8 8 C 1.36943 * 120.00288 * 205.00233 * 7 5 4 9 9 H 1.07992 * 119.99476 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00054 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99988 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00029 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47080 * 90.00242 * 12 10 8 14 14 H 1.48503 * 109.47009 * 209.99919 * 12 10 8 15 15 H 1.48495 * 109.47307 * 329.99945 * 12 10 8 16 16 C 1.55125 * 101.48977 * 324.32942 * 5 4 2 17 17 N 1.47017 * 109.88070 * 238.90101 * 2 1 3 18 18 C 1.34774 * 125.65345 * 61.61023 * 17 2 1 19 19 O 1.21569 * 119.99524 * 5.77166 * 18 17 2 20 20 C 1.47718 * 120.00584 * 185.77826 * 18 17 2 21 21 C 1.39664 * 120.11769 * 24.55027 * 20 18 17 22 22 C 1.37820 * 119.88041 * 179.76822 * 21 20 18 23 23 C 1.38676 * 120.11732 * 0.51315 * 22 21 20 24 24 F 1.35104 * 119.88165 * 179.75956 * 23 22 21 25 25 C 1.38628 * 120.23767 * 359.48870 * 23 22 21 26 26 C 1.50705 * 119.94323 * 180.23367 * 25 23 22 27 27 F 1.39902 * 109.47058 * 29.99351 * 26 25 23 28 28 F 1.39893 * 109.47311 * 149.99923 * 26 25 23 29 29 C 1.37863 * 120.11995 * 0.25383 * 25 23 22 30 30 H 1.09003 * 109.46899 * 179.64342 * 1 2 3 31 31 H 1.09000 * 109.46984 * 299.64418 * 1 2 3 32 32 H 1.08999 * 109.47346 * 59.64348 * 1 2 3 33 33 H 1.09000 * 110.71957 * 259.96914 * 4 2 1 34 34 H 1.08994 * 110.72299 * 23.06835 * 4 2 1 35 35 H 0.97006 * 120.00129 * 24.99854 * 7 5 4 36 36 H 0.97003 * 119.99962 * 179.97438 * 11 10 8 37 37 H 1.08998 * 110.50010 * 278.45783 * 16 5 4 38 38 H 1.08994 * 110.34792 * 156.05804 * 16 5 4 39 39 H 1.08004 * 120.06349 * 0.02832 * 21 20 18 40 40 H 1.07999 * 119.94227 * 180.24953 * 22 21 20 41 41 H 1.09000 * 109.46972 * 270.00135 * 26 25 23 42 42 H 1.07998 * 120.05708 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 4.1654 -0.8688 0.6605 7 7 3.5537 -2.7190 1.4823 8 6 4.8172 -3.2457 1.5234 9 1 5.6172 -2.7730 0.9732 10 6 5.0694 -4.3869 2.2722 11 7 6.2836 -4.8934 2.3113 12 14 3.6854 -5.2040 3.2244 13 1 3.0227 -6.2164 2.3635 14 1 4.2398 -5.8676 4.4317 15 1 2.6938 -4.1778 3.6349 16 6 2.8100 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4657 19 8 1.2322 0.6784 -2.7192 20 6 2.2623 -1.2408 -3.5626 21 6 2.4427 -2.6073 -3.3370 22 6 2.8627 -3.4234 -4.3651 23 6 3.1162 -2.8882 -5.6191 24 9 3.5324 -3.6918 -6.6223 25 6 2.9388 -1.5326 -5.8484 26 6 3.2113 -0.9589 -7.2151 27 9 2.9564 -1.9312 -8.1883 28 9 2.3810 0.1461 -7.4311 29 6 2.5140 -0.7081 -4.8284 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 2.3529 -0.0459 2.0201 34 1 1.3039 -1.4436 1.6202 35 1 2.8349 -3.1438 1.9762 36 1 6.4599 -5.6907 2.8349 37 1 2.1802 -2.7718 -0.7113 38 1 3.6655 -2.0413 -1.3931 39 1 2.2495 -3.0245 -2.3597 40 1 2.9986 -4.4808 -4.1928 41 1 4.2540 -0.6476 -7.2772 42 1 2.3766 0.3479 -5.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988848042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:56 Heat of formation + Delta-G solvation = -126.849296 kcal Electronic energy + Delta-G solvation = -29961.079560 eV Core-core repulsion = 25299.091215 eV Total energy + Delta-G solvation = -4661.988345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.56121 -49.04590 -47.27988 -40.66873 -38.87852 -37.47106 -34.49168 -33.10746 -31.82948 -31.66419 -30.59670 -29.05400 -26.65104 -25.75419 -24.54588 -23.50478 -22.63025 -21.51505 -20.62486 -19.42368 -18.02860 -18.00513 -17.84921 -17.71142 -17.44879 -16.71238 -16.33741 -15.89048 -15.72098 -15.38636 -14.64545 -14.53590 -14.25363 -14.17885 -14.00530 -13.88861 -13.62893 -13.43009 -13.36253 -13.24586 -12.93548 -12.78171 -12.71684 -12.38874 -12.31351 -12.07291 -11.92471 -11.52250 -11.33340 -11.14449 -10.88782 -10.80743 -10.49398 -10.20845 -9.99359 -9.75922 -9.56281 -9.16678 -9.12301 -8.58474 -7.51788 -5.94742 -3.34035 0.34253 0.70518 2.49261 2.86503 3.24361 3.26650 3.28097 3.34362 3.37201 3.68846 3.80910 4.09076 4.31623 4.42384 4.51862 4.55722 4.69447 4.78545 4.88743 4.95956 5.01494 5.23445 5.26326 5.36515 5.41258 5.51471 5.53792 5.57818 5.61861 5.70485 5.79817 5.82139 5.88206 5.92154 6.09792 6.20596 6.22810 6.30761 6.45614 6.56468 7.52076 7.78440 8.09653 8.23422 8.99443 9.71379 9.88631 11.22562 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.003262 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.367438 B = 8582.311762 C =10344.681897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.079 0.921 7 N -0.734 5.734 8 C -0.258 4.258 9 H 0.093 0.907 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.065 3.935 17 N -0.603 5.603 18 C 0.575 3.425 19 O -0.540 6.540 20 C -0.139 4.139 21 C -0.044 4.044 22 C -0.158 4.158 23 C 0.155 3.845 24 F -0.122 7.122 25 C -0.220 4.220 26 C 0.320 3.680 27 F -0.193 7.193 28 F -0.194 7.194 29 C -0.004 4.004 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.365 0.635 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.127 0.873 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 7.261 -13.546 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.097 0.903 7 N -0.375 5.375 8 C -0.387 4.387 9 H 0.111 0.889 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.712 3.288 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.061 4.061 17 N -0.336 5.336 18 C 0.364 3.636 19 O -0.419 6.419 20 C -0.142 4.142 21 C -0.063 4.063 22 C -0.177 4.177 23 C 0.135 3.865 24 F -0.101 7.101 25 C -0.222 4.222 26 C 0.266 3.734 27 F -0.175 7.175 28 F -0.175 7.175 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.198 0.802 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.144 0.856 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.692 7.735 -13.807 18.056 hybrid contribution -0.860 -1.063 0.446 1.439 sum -9.553 6.672 -13.360 17.728 Atomic orbital electron populations 1.22136 0.94942 1.02222 1.02646 1.21547 0.94268 0.96447 0.84154 0.90433 1.23102 0.98981 0.99884 0.96068 1.21318 0.95218 0.88834 0.88029 0.90295 1.42670 1.09251 1.29282 1.56337 1.19064 0.85831 1.07541 1.26308 0.88945 1.24684 0.96097 0.97950 0.99707 1.69696 1.19001 1.23964 1.44604 0.86596 0.82249 0.79671 0.80241 1.20913 1.21562 1.20180 1.23803 0.94673 0.87395 1.00225 1.48475 1.51824 1.28911 1.04406 1.17683 0.79508 0.85083 0.81363 1.90770 1.43249 1.24490 1.83413 1.19916 1.05592 0.94262 0.94458 1.22040 0.91850 0.92226 1.00143 1.21205 1.03380 1.02173 0.90947 1.17589 0.96323 0.86912 0.85690 1.91580 1.86825 1.72656 1.58995 1.20397 1.11126 0.93644 0.97034 1.20159 0.94655 0.75697 0.82881 1.93046 1.95741 1.63774 1.64893 1.93021 1.75383 1.53850 1.95289 1.20840 0.91077 1.00659 0.89699 0.92517 0.91602 0.91616 0.89853 0.90525 0.80170 0.92787 0.90967 0.90186 0.82341 0.83060 0.85558 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.10 37.16 0.34 -1.54 16 2 C 0.14 1.76 3.43 -66.95 -0.23 1.53 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.84 6.12 -24.89 -0.15 -1.99 16 5 C 0.18 2.86 3.73 -65.67 -0.24 2.62 16 6 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 7 N -0.73 -14.91 5.05 -51.24 -0.26 -15.17 16 8 C -0.26 -6.50 10.44 -15.06 -0.16 -6.65 16 9 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 11 N -0.93 -27.14 13.97 55.49 0.78 -26.37 16 12 Si 0.88 20.18 27.73 -169.99 -4.71 15.47 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -5.86 6.52 56.52 0.37 -5.49 16 16 C 0.06 0.91 4.69 -2.41 -0.01 0.90 16 17 N -0.60 -8.20 3.06 -164.02 -0.50 -8.70 16 18 C 0.57 8.28 7.39 -12.39 -0.09 8.19 16 19 O -0.54 -9.08 15.86 5.30 0.08 -8.99 16 20 C -0.14 -1.75 5.67 -104.97 -0.60 -2.34 16 21 C -0.04 -0.50 8.06 -39.20 -0.32 -0.82 16 22 C -0.16 -1.68 10.01 -39.57 -0.40 -2.08 16 23 C 0.15 1.73 7.15 -39.28 -0.28 1.45 16 24 F -0.12 -1.43 15.41 2.25 0.03 -1.39 16 25 C -0.22 -2.38 5.74 -104.61 -0.60 -2.98 16 26 C 0.32 3.02 5.59 36.01 0.20 3.23 16 27 F -0.19 -2.18 15.48 2.25 0.03 -2.15 16 28 F -0.19 -2.08 16.48 2.25 0.04 -2.05 16 29 C 0.00 -0.04 8.93 -39.20 -0.35 -0.39 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.86 7.08 -51.93 -0.37 0.49 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.98 7.72 -51.93 -0.40 0.58 16 35 H 0.36 7.29 5.63 -40.82 -0.23 7.06 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 0.99 6.84 -51.93 -0.36 0.63 16 38 H 0.08 1.14 6.81 -51.93 -0.35 0.79 16 39 H 0.16 1.74 4.59 -52.48 -0.24 1.50 16 40 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.15 1.70 7.38 -52.49 -0.39 1.31 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -30.30 354.60 -7.03 -37.33 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.88 Total: 7.32 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.98 Total: -0.64 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.01 Total: -50.24 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.11 Total: -5.59 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.71 Total: 15.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.30 -7.03 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.516 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds