Wall clock time and date at job start Wed Apr 1 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99661 * 2 1 4 4 C 1.54327 * 109.88012 * 121.09343 * 2 1 3 5 5 C 1.55156 * 102.93923 * 141.61162 * 4 2 1 6 6 H 1.09004 * 111.00488 * 82.57519 * 5 4 2 7 7 N 1.46501 * 111.00422 * 206.38506 * 5 4 2 8 8 C 1.36943 * 120.00288 * 205.00233 * 7 5 4 9 9 H 1.07992 * 119.99476 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00054 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99988 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 120.00029 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47080 * 90.00242 * 12 10 8 14 14 H 1.48503 * 109.47009 * 209.99919 * 12 10 8 15 15 H 1.48495 * 109.47307 * 329.99945 * 12 10 8 16 16 C 1.55125 * 101.48977 * 324.32942 * 5 4 2 17 17 N 1.47017 * 109.88070 * 238.90101 * 2 1 3 18 18 C 1.34774 * 125.65345 * 61.61023 * 17 2 1 19 19 O 1.21569 * 119.99524 * 5.77166 * 18 17 2 20 20 C 1.47718 * 120.00584 * 185.77826 * 18 17 2 21 21 C 1.39664 * 120.11769 * 24.55027 * 20 18 17 22 22 C 1.37820 * 119.88041 * 179.76822 * 21 20 18 23 23 C 1.38676 * 120.11732 * 0.51315 * 22 21 20 24 24 F 1.35104 * 119.88165 * 179.75956 * 23 22 21 25 25 C 1.38628 * 120.23767 * 359.48870 * 23 22 21 26 26 C 1.50705 * 119.94323 * 180.23367 * 25 23 22 27 27 F 1.39902 * 109.47058 * 29.99351 * 26 25 23 28 28 F 1.39893 * 109.47311 * 149.99923 * 26 25 23 29 29 C 1.37863 * 120.11995 * 0.25383 * 25 23 22 30 30 H 1.09003 * 109.46899 * 179.64342 * 1 2 3 31 31 H 1.09000 * 109.46984 * 299.64418 * 1 2 3 32 32 H 1.08999 * 109.47346 * 59.64348 * 1 2 3 33 33 H 1.09000 * 110.71957 * 259.96914 * 4 2 1 34 34 H 1.08994 * 110.72299 * 23.06835 * 4 2 1 35 35 H 0.97006 * 120.00129 * 24.99854 * 7 5 4 36 36 H 0.97003 * 119.99962 * 179.97438 * 11 10 8 37 37 H 1.08998 * 110.50010 * 278.45783 * 16 5 4 38 38 H 1.08994 * 110.34792 * 156.05804 * 16 5 4 39 39 H 1.08004 * 120.06349 * 0.02832 * 21 20 18 40 40 H 1.07999 * 119.94227 * 180.24953 * 22 21 20 41 41 H 1.09000 * 109.46972 * 270.00135 * 26 25 23 42 42 H 1.07998 * 120.05708 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 3.2876 -1.5142 0.6925 6 1 4.1654 -0.8688 0.6605 7 7 3.5537 -2.7190 1.4823 8 6 4.8172 -3.2457 1.5234 9 1 5.6172 -2.7730 0.9732 10 6 5.0694 -4.3869 2.2722 11 7 6.2836 -4.8934 2.3113 12 14 3.6854 -5.2040 3.2244 13 1 3.0227 -6.2164 2.3635 14 1 4.2398 -5.8676 4.4317 15 1 2.6938 -4.1778 3.6349 16 6 2.8100 -1.8826 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.8075 -0.3622 -2.4657 19 8 1.2322 0.6784 -2.7192 20 6 2.2623 -1.2408 -3.5626 21 6 2.4427 -2.6073 -3.3370 22 6 2.8627 -3.4234 -4.3651 23 6 3.1162 -2.8882 -5.6191 24 9 3.5324 -3.6918 -6.6223 25 6 2.9388 -1.5326 -5.8484 26 6 3.2113 -0.9589 -7.2151 27 9 2.9564 -1.9312 -8.1883 28 9 2.3810 0.1461 -7.4311 29 6 2.5140 -0.7081 -4.8284 30 1 -0.3633 -1.0277 -0.0064 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 2.3529 -0.0459 2.0201 34 1 1.3039 -1.4436 1.6202 35 1 2.8349 -3.1438 1.9762 36 1 6.4599 -5.6907 2.8349 37 1 2.1802 -2.7718 -0.7113 38 1 3.6655 -2.0413 -1.3931 39 1 2.2495 -3.0245 -2.3597 40 1 2.9986 -4.4808 -4.1928 41 1 4.2540 -0.6476 -7.2772 42 1 2.3766 0.3479 -5.0081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988848042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:41 Heat of formation + Delta-G solvation = -144.053059 kcal Electronic energy + Delta-G solvation = -29961.825572 eV Core-core repulsion = 25299.091215 eV Total energy + Delta-G solvation = -4662.734356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 7.76 seconds Orbital eigenvalues (eV) -50.42112 -49.89195 -48.09725 -41.74530 -39.87315 -38.67573 -36.11497 -34.08113 -33.46804 -32.75474 -31.55532 -30.52043 -27.50201 -26.79387 -25.84406 -24.93701 -23.56190 -22.57463 -21.98727 -20.47627 -19.68521 -18.94906 -18.78138 -18.61254 -18.34426 -17.79508 -17.35999 -16.78833 -16.72994 -16.67656 -16.18739 -15.58928 -15.40842 -15.22300 -15.14521 -14.91980 -14.76868 -14.47872 -14.37932 -14.33341 -14.16901 -13.93667 -13.81281 -13.53838 -13.34222 -13.17708 -12.95101 -12.87141 -12.82421 -12.31435 -12.16170 -11.97806 -11.88228 -11.81202 -11.49787 -11.17570 -10.93484 -10.42358 -10.08160 -9.73655 -9.31565 -7.98653 -5.34711 -0.58909 -0.17361 1.44454 1.46274 1.47474 1.54438 1.79405 2.35791 2.51947 2.52644 2.82586 3.08607 3.11039 3.30663 3.37113 3.56355 3.69876 3.76064 3.81485 3.85427 3.90708 4.09528 4.10696 4.26032 4.37409 4.40297 4.46681 4.62956 4.68610 4.71268 4.75388 4.79978 4.88329 4.96211 5.05067 5.10323 5.22959 5.33977 5.38289 5.47297 5.81013 6.24078 6.39047 6.97234 7.10366 7.83101 8.02615 9.22042 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.003262 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.367438 B = 8582.311762 C =10344.681897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.168 3.832 6 H 0.065 0.935 7 N -0.735 5.735 8 C -0.233 4.233 9 H 0.061 0.939 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.949 3.051 13 H -0.277 1.277 14 H -0.304 1.304 15 H -0.246 1.246 16 C 0.076 3.924 17 N -0.601 5.601 18 C 0.574 3.426 19 O -0.568 6.568 20 C -0.152 4.152 21 C -0.044 4.044 22 C -0.155 4.155 23 C 0.150 3.850 24 F -0.125 7.125 25 C -0.218 4.218 26 C 0.316 3.684 27 F -0.204 7.204 28 F -0.202 7.202 29 C -0.006 4.006 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.371 0.629 36 H 0.257 0.743 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 7.426 -13.521 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.166 4.166 5 C 0.058 3.942 6 H 0.083 0.917 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.079 0.921 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.203 1.203 14 H -0.232 1.232 15 H -0.170 1.170 16 C -0.049 4.049 17 N -0.333 5.333 18 C 0.364 3.636 19 O -0.449 6.449 20 C -0.155 4.155 21 C -0.062 4.062 22 C -0.174 4.174 23 C 0.130 3.870 24 F -0.103 7.103 25 C -0.219 4.219 26 C 0.263 3.737 27 F -0.185 7.185 28 F -0.183 7.183 29 C -0.025 4.025 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.205 0.795 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.180 0.820 40 H 0.187 0.813 41 H 0.183 0.817 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.566 7.950 -13.803 19.114 hybrid contribution -0.253 -1.013 0.347 1.100 sum -10.818 6.937 -13.456 18.607 Atomic orbital electron populations 1.22069 0.93729 1.02480 1.02884 1.21653 0.95190 0.96276 0.83522 0.90500 1.23018 0.97380 0.99836 0.96360 1.21458 0.96360 0.87494 0.88918 0.91674 1.42556 1.07504 1.30417 1.57227 1.18997 0.86964 1.06457 1.23930 0.92141 1.25449 0.98450 0.99226 1.01739 1.69881 1.21717 1.24894 1.46656 0.85507 0.79655 0.79106 0.78075 1.20307 1.23153 1.16984 1.23538 0.94876 0.87900 0.98585 1.48470 1.51505 1.28695 1.04639 1.17921 0.78998 0.84880 0.81760 1.90754 1.44609 1.25750 1.83769 1.19875 1.06729 0.94586 0.94329 1.22041 0.91889 0.91754 1.00524 1.21393 1.02491 1.03013 0.90463 1.17716 0.96395 0.87064 0.85842 1.91577 1.86869 1.72728 1.59134 1.20517 1.10370 0.93491 0.97565 1.20555 0.96260 0.75116 0.81748 1.93024 1.95923 1.64331 1.65245 1.93005 1.75908 1.54173 1.95257 1.20855 0.91166 1.00860 0.89608 0.92179 0.89473 0.93287 0.88588 0.89340 0.79502 0.93411 0.89835 0.90569 0.81976 0.81285 0.81725 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.10 71.98 0.66 -2.53 16 2 C 0.14 3.16 3.43 45.34 0.16 3.32 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.13 -2.95 6.12 31.78 0.19 -2.76 16 5 C 0.17 5.13 3.73 46.46 0.17 5.30 16 6 H 0.07 2.18 8.09 -2.38 -0.02 2.16 16 7 N -0.73 -28.51 5.05 -316.02 -1.59 -30.11 16 8 C -0.23 -11.70 10.44 84.03 0.88 -10.82 16 9 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 10 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 11 N -0.98 -58.92 13.97 21.65 0.30 -58.61 16 12 Si 0.95 40.95 27.73 68.60 1.90 42.86 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 15 H -0.25 -9.24 6.52 99.48 0.65 -8.59 16 16 C 0.08 2.02 4.69 86.93 0.41 2.43 16 17 N -0.60 -15.45 3.06 -791.12 -2.42 -17.87 16 18 C 0.57 16.04 7.39 86.75 0.64 16.68 16 19 O -0.57 -18.79 15.86 -3.93 -0.06 -18.86 16 20 C -0.15 -3.68 5.67 -20.09 -0.11 -3.79 16 21 C -0.04 -0.94 8.06 22.52 0.18 -0.76 16 22 C -0.16 -3.04 10.01 22.28 0.22 -2.82 16 23 C 0.15 3.13 7.15 22.47 0.16 3.29 16 24 F -0.12 -2.73 15.41 44.97 0.69 -2.04 16 25 C -0.22 -4.41 5.74 -19.86 -0.11 -4.53 16 26 C 0.32 5.47 5.59 71.24 0.40 5.87 16 27 F -0.20 -4.32 15.48 44.97 0.70 -3.63 16 28 F -0.20 -4.10 16.48 44.97 0.74 -3.36 16 29 C -0.01 -0.13 8.93 22.52 0.20 0.07 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.20 7.08 -2.39 -0.02 1.18 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 1.90 7.72 -2.39 -0.02 1.88 16 35 H 0.37 13.64 5.63 -92.70 -0.52 13.12 16 36 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.08 2.08 6.84 -2.39 -0.02 2.06 16 38 H 0.08 2.10 6.81 -2.39 -0.02 2.08 16 39 H 0.16 3.28 4.59 -2.91 -0.01 3.27 16 40 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.17 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.15 3.33 7.38 -2.91 -0.02 3.31 16 Total: -1.00 -65.99 354.60 5.27 -60.72 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.50 Total: 24.51 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.51 Total: 6.39 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.72 Total: -106.59 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 9 Polarization: -11.15 SS G_CDS: 2.13 Total: -9.02 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.90 Total: 42.86 kcal Total: -65.99 5.27 -60.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.333 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.76 seconds