Wall clock time and date at job start Wed Apr 1 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.99878 * 2 1 4 4 C 1.54328 * 109.88124 * 238.90796 * 2 1 3 5 5 C 1.55154 * 102.94136 * 218.38879 * 4 2 1 6 6 H 1.08999 * 111.00490 * 277.39066 * 5 4 2 7 7 N 1.46509 * 111.00251 * 153.57409 * 5 4 2 8 8 C 1.36937 * 119.99556 * 155.00064 * 7 5 4 9 9 H 1.08000 * 120.00255 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99413 * 179.72788 * 8 7 5 11 11 N 1.31612 * 120.00119 * 0.27145 * 10 8 7 12 12 Si 1.86801 * 119.99563 * 180.27468 * 10 8 7 13 13 H 1.48499 * 109.47265 * 60.00100 * 12 10 8 14 14 H 1.48502 * 109.46811 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47361 * 299.99773 * 12 10 8 16 16 C 1.54915 * 101.58206 * 35.50591 * 5 4 2 17 17 N 1.47020 * 109.88353 * 121.09973 * 2 1 3 18 18 C 1.34777 * 125.64904 * 298.37691 * 17 2 1 19 19 O 1.21568 * 120.00067 * 354.19994 * 18 17 2 20 20 C 1.47724 * 119.99778 * 174.19710 * 18 17 2 21 21 C 1.39673 * 120.12287 * 335.22544 * 20 18 17 22 22 C 1.37814 * 119.87970 * 179.76911 * 21 20 18 23 23 C 1.38678 * 120.12107 * 0.48886 * 22 21 20 24 24 F 1.35100 * 119.88027 * 179.76428 * 23 22 21 25 25 C 1.38634 * 120.23443 * 359.78651 * 23 22 21 26 26 C 1.50701 * 119.93546 * 179.97438 * 25 23 22 27 27 F 1.39903 * 109.47047 * 119.98375 * 26 25 23 28 28 F 1.39902 * 109.46847 * 239.97769 * 26 25 23 29 29 C 1.37858 * 120.12373 * 359.95610 * 25 23 22 30 30 H 1.09002 * 109.47189 * 181.09445 * 1 2 3 31 31 H 1.08999 * 109.47214 * 301.09315 * 1 2 3 32 32 H 1.09002 * 109.47461 * 61.08938 * 1 2 3 33 33 H 1.09002 * 110.71891 * 100.02218 * 4 2 1 34 34 H 1.08996 * 110.87126 * 336.82536 * 4 2 1 35 35 H 0.96999 * 119.99985 * 335.00473 * 7 5 4 36 36 H 0.97006 * 120.00236 * 180.02562 * 11 10 8 37 37 H 1.08993 * 110.36996 * 81.82383 * 16 5 4 38 38 H 1.09003 * 110.36158 * 204.15308 * 16 5 4 39 39 H 1.08003 * 120.05424 * 359.97438 * 21 20 18 40 40 H 1.07998 * 119.93690 * 180.27365 * 22 21 20 41 41 H 1.08995 * 109.47368 * 359.97438 * 26 25 23 42 42 H 1.07995 * 120.05815 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6925 6 1 4.1655 -0.8690 -0.6611 7 7 3.5531 -2.7196 -1.4819 8 6 4.8163 -3.2465 -1.5231 9 1 5.6168 -2.7737 -0.9734 10 6 5.0667 -4.3917 -2.2664 11 7 4.0910 -4.9681 -2.9359 12 14 6.7883 -5.1149 -2.3164 13 1 7.2119 -5.4803 -0.9408 14 1 6.7910 -6.3278 -3.1733 15 1 7.7305 -4.1119 -2.8745 16 6 2.8144 -1.8796 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8077 -0.3620 2.4657 19 8 1.2331 0.6789 2.7192 20 6 2.2621 -1.2410 3.5625 21 6 2.4373 -2.6084 3.3382 22 6 2.8660 -3.4231 4.3637 23 6 3.1137 -2.8892 5.6194 24 9 3.5293 -3.6930 6.6226 25 6 2.9359 -1.5336 5.8491 26 6 3.2065 -0.9606 7.2164 27 9 4.2112 0.0087 7.1254 28 9 2.0381 -0.3757 7.7164 29 6 2.5125 -0.7087 4.8289 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8800 32 1 -0.3634 0.4968 -0.8996 33 1 2.3528 -0.0459 -2.0201 34 1 1.3064 -1.4457 -1.6212 35 1 2.8340 -3.1443 -1.9753 36 1 4.2659 -5.7687 -3.4550 37 1 2.1885 -2.7715 0.7126 38 1 3.6716 -2.0340 1.3920 39 1 2.2403 -3.0260 2.3618 40 1 3.0060 -4.4797 4.1901 41 1 3.5296 -1.7571 7.8867 42 1 2.3740 0.3471 5.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988848045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:06 Heat of formation + Delta-G solvation = -132.572385 kcal Electronic energy + Delta-G solvation = -29885.691165 eV Core-core repulsion = 25223.454649 eV Total energy + Delta-G solvation = -4662.236517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -49.59917 -49.17375 -47.26809 -40.61424 -38.83579 -37.38347 -34.33563 -33.07937 -31.78084 -31.50964 -30.61364 -28.53623 -26.67242 -25.67852 -24.55304 -23.71831 -22.58098 -21.57171 -20.49674 -19.37053 -18.21284 -17.86713 -17.62779 -17.55024 -17.43959 -16.69449 -16.24800 -16.01903 -15.65485 -15.36234 -14.63114 -14.43102 -14.21525 -14.13524 -14.07325 -13.75130 -13.63442 -13.56624 -13.32478 -13.17636 -12.95073 -12.74919 -12.70454 -12.31653 -12.20846 -11.93123 -11.78064 -11.26494 -11.20293 -11.04581 -10.80901 -10.74592 -10.40039 -10.15123 -9.95737 -9.83767 -9.61833 -9.17568 -9.10887 -8.50766 -7.20682 -5.95046 -3.26706 0.31897 0.70130 2.51317 2.92981 3.26645 3.33452 3.37787 3.39311 3.39641 3.63549 3.78036 4.09701 4.33267 4.44456 4.51082 4.67464 4.72022 4.87084 4.93993 4.99474 5.14878 5.24937 5.39388 5.44507 5.49713 5.55104 5.57894 5.65573 5.69245 5.75626 5.85198 5.94669 6.01314 6.06983 6.22070 6.28003 6.32564 6.36982 6.53423 6.70048 7.53641 7.60163 8.14845 8.22364 9.34494 9.86484 10.21537 11.26493 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003353 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.925636 B = 8349.543744 C =10263.915481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.172 3.828 6 H 0.070 0.930 7 N -0.710 5.710 8 C -0.254 4.254 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.064 3.936 17 N -0.602 5.602 18 C 0.573 3.427 19 O -0.542 6.542 20 C -0.137 4.137 21 C -0.041 4.041 22 C -0.158 4.158 23 C 0.153 3.847 24 F -0.129 7.129 25 C -0.220 4.220 26 C 0.318 3.682 27 F -0.194 7.194 28 F -0.195 7.195 29 C 0.003 3.997 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 5.594 15.365 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.059 3.941 6 H 0.088 0.912 7 N -0.349 5.349 8 C -0.384 4.384 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.062 4.062 17 N -0.335 5.335 18 C 0.362 3.638 19 O -0.421 6.421 20 C -0.141 4.141 21 C -0.059 4.059 22 C -0.177 4.177 23 C 0.133 3.867 24 F -0.108 7.108 25 C -0.222 4.222 26 C 0.265 3.735 27 F -0.175 7.175 28 F -0.176 7.176 29 C -0.016 4.016 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.954 6.097 15.573 17.443 hybrid contribution 0.806 -0.820 0.030 1.150 sum -4.147 5.277 15.603 16.986 Atomic orbital electron populations 1.22127 0.94960 1.02283 1.02513 1.21559 0.94269 0.96324 0.84288 0.90655 1.23063 0.99165 0.99736 0.95717 1.21314 0.94871 0.89594 0.88279 0.91206 1.42315 1.09654 1.27697 1.55271 1.19207 0.86839 1.06865 1.25534 0.90955 1.24760 0.97640 0.98171 0.99599 1.69640 1.30963 1.22121 1.34790 0.86273 0.83898 0.78500 0.77519 1.21092 1.21589 1.21069 1.23841 0.94399 0.87510 1.00408 1.48499 1.51536 1.29073 1.04343 1.17683 0.79611 0.85105 0.81444 1.90767 1.43380 1.24466 1.83440 1.19978 1.05287 0.94308 0.94491 1.22077 0.91440 0.92179 1.00235 1.21185 1.03389 1.02210 0.90875 1.17575 0.96648 0.86767 0.85669 1.91524 1.87230 1.72789 1.59208 1.20231 1.11275 0.93393 0.97254 1.20130 0.74350 0.86425 0.92634 1.93040 1.60805 1.66555 1.97139 1.93037 1.49696 1.86383 1.88458 1.20897 0.90384 1.00510 0.89797 0.92427 0.91770 0.91603 0.90129 0.90253 0.77780 0.93180 0.90823 0.90722 0.82153 0.82975 0.85963 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.10 37.16 0.34 -1.68 16 2 C 0.14 1.89 3.43 -66.95 -0.23 1.66 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -1.96 6.12 -24.90 -0.15 -2.11 16 5 C 0.17 2.94 3.71 -65.78 -0.24 2.70 16 6 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 7 N -0.71 -15.54 5.24 -51.34 -0.27 -15.81 16 8 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 11 N -0.93 -25.86 13.06 55.49 0.72 -25.13 16 12 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.06 0.96 4.69 -2.52 -0.01 0.95 16 17 N -0.60 -8.69 3.06 -164.16 -0.50 -9.19 16 18 C 0.57 8.70 7.39 -12.38 -0.09 8.61 16 19 O -0.54 -9.54 15.87 5.31 0.08 -9.45 16 20 C -0.14 -1.81 5.67 -104.97 -0.59 -2.40 16 21 C -0.04 -0.48 8.07 -39.20 -0.32 -0.79 16 22 C -0.16 -1.63 10.01 -39.57 -0.40 -2.03 16 23 C 0.15 1.61 7.25 -39.27 -0.28 1.33 16 24 F -0.13 -1.28 16.18 2.25 0.04 -1.24 16 25 C -0.22 -2.43 5.37 -104.61 -0.56 -2.99 16 26 C 0.32 3.15 5.43 36.01 0.20 3.34 16 27 F -0.19 -2.20 17.25 2.25 0.04 -2.17 16 28 F -0.19 -2.18 17.25 2.25 0.04 -2.14 16 29 C 0.00 0.04 9.13 -39.20 -0.36 -0.32 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.89 7.10 -51.93 -0.37 0.52 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.14 7.72 -51.93 -0.40 0.74 16 35 H 0.39 9.07 7.76 -40.82 -0.32 8.75 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.07 1.10 6.82 -51.93 -0.35 0.75 16 38 H 0.07 1.11 6.85 -51.93 -0.36 0.75 16 39 H 0.16 1.84 4.62 -52.48 -0.24 1.60 16 40 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.12 0.88 7.12 -51.93 -0.37 0.51 16 42 H 0.15 1.86 7.84 -52.49 -0.41 1.45 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -28.86 360.30 -7.30 -36.15 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.90 Total: 8.18 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.95 Total: -0.44 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.05 Total: -50.13 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.86 -7.30 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.419 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds