Wall clock time and date at job start Wed Apr 1 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.99878 * 2 1 4 4 C 1.54328 * 109.88124 * 238.90796 * 2 1 3 5 5 C 1.55154 * 102.94136 * 218.38879 * 4 2 1 6 6 H 1.08999 * 111.00490 * 277.39066 * 5 4 2 7 7 N 1.46509 * 111.00251 * 153.57409 * 5 4 2 8 8 C 1.36937 * 119.99556 * 155.00064 * 7 5 4 9 9 H 1.08000 * 120.00255 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99413 * 179.72788 * 8 7 5 11 11 N 1.31612 * 120.00119 * 0.27145 * 10 8 7 12 12 Si 1.86801 * 119.99563 * 180.27468 * 10 8 7 13 13 H 1.48499 * 109.47265 * 60.00100 * 12 10 8 14 14 H 1.48502 * 109.46811 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47361 * 299.99773 * 12 10 8 16 16 C 1.54915 * 101.58206 * 35.50591 * 5 4 2 17 17 N 1.47020 * 109.88353 * 121.09973 * 2 1 3 18 18 C 1.34777 * 125.64904 * 298.37691 * 17 2 1 19 19 O 1.21568 * 120.00067 * 354.19994 * 18 17 2 20 20 C 1.47724 * 119.99778 * 174.19710 * 18 17 2 21 21 C 1.39673 * 120.12287 * 335.22544 * 20 18 17 22 22 C 1.37814 * 119.87970 * 179.76911 * 21 20 18 23 23 C 1.38678 * 120.12107 * 0.48886 * 22 21 20 24 24 F 1.35100 * 119.88027 * 179.76428 * 23 22 21 25 25 C 1.38634 * 120.23443 * 359.78651 * 23 22 21 26 26 C 1.50701 * 119.93546 * 179.97438 * 25 23 22 27 27 F 1.39903 * 109.47047 * 119.98375 * 26 25 23 28 28 F 1.39902 * 109.46847 * 239.97769 * 26 25 23 29 29 C 1.37858 * 120.12373 * 359.95610 * 25 23 22 30 30 H 1.09002 * 109.47189 * 181.09445 * 1 2 3 31 31 H 1.08999 * 109.47214 * 301.09315 * 1 2 3 32 32 H 1.09002 * 109.47461 * 61.08938 * 1 2 3 33 33 H 1.09002 * 110.71891 * 100.02218 * 4 2 1 34 34 H 1.08996 * 110.87126 * 336.82536 * 4 2 1 35 35 H 0.96999 * 119.99985 * 335.00473 * 7 5 4 36 36 H 0.97006 * 120.00236 * 180.02562 * 11 10 8 37 37 H 1.08993 * 110.36996 * 81.82383 * 16 5 4 38 38 H 1.09003 * 110.36158 * 204.15308 * 16 5 4 39 39 H 1.08003 * 120.05424 * 359.97438 * 21 20 18 40 40 H 1.07998 * 119.93690 * 180.27365 * 22 21 20 41 41 H 1.08995 * 109.47368 * 359.97438 * 26 25 23 42 42 H 1.07995 * 120.05815 * 179.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 6 3.2876 -1.5142 -0.6925 6 1 4.1655 -0.8690 -0.6611 7 7 3.5531 -2.7196 -1.4819 8 6 4.8163 -3.2465 -1.5231 9 1 5.6168 -2.7737 -0.9734 10 6 5.0667 -4.3917 -2.2664 11 7 4.0910 -4.9681 -2.9359 12 14 6.7883 -5.1149 -2.3164 13 1 7.2119 -5.4803 -0.9408 14 1 6.7910 -6.3278 -3.1733 15 1 7.7305 -4.1119 -2.8745 16 6 2.8144 -1.8796 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.8077 -0.3620 2.4657 19 8 1.2331 0.6789 2.7192 20 6 2.2621 -1.2410 3.5625 21 6 2.4373 -2.6084 3.3382 22 6 2.8660 -3.4231 4.3637 23 6 3.1137 -2.8892 5.6194 24 9 3.5293 -3.6930 6.6226 25 6 2.9359 -1.5336 5.8491 26 6 3.2065 -0.9606 7.2164 27 9 4.2112 0.0087 7.1254 28 9 2.0381 -0.3757 7.7164 29 6 2.5125 -0.7087 4.8289 30 1 -0.3634 -1.0275 0.0196 31 1 -0.3633 0.5307 0.8800 32 1 -0.3634 0.4968 -0.8996 33 1 2.3528 -0.0459 -2.0201 34 1 1.3064 -1.4457 -1.6212 35 1 2.8340 -3.1443 -1.9753 36 1 4.2659 -5.7687 -3.4550 37 1 2.1885 -2.7715 0.7126 38 1 3.6716 -2.0340 1.3920 39 1 2.2403 -3.0260 2.3618 40 1 3.0060 -4.4797 4.1901 41 1 3.5296 -1.7571 7.8867 42 1 2.3740 0.3471 5.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988848045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:06 Heat of formation + Delta-G solvation = -147.752249 kcal Electronic energy + Delta-G solvation = -29886.349414 eV Core-core repulsion = 25223.454649 eV Total energy + Delta-G solvation = -4662.894765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.42480 -50.00473 -48.11336 -41.74409 -39.86612 -38.65091 -36.00303 -34.08651 -33.22237 -32.74383 -31.61611 -30.08076 -27.55091 -26.81913 -25.97985 -25.11489 -23.51052 -22.66920 -21.86267 -20.47172 -19.27787 -19.08105 -18.76684 -18.55437 -18.38793 -17.77844 -17.36248 -16.85910 -16.79245 -16.63458 -16.10428 -15.50211 -15.37174 -15.30553 -15.08705 -15.03800 -14.82139 -14.48748 -14.43348 -14.22537 -14.16321 -13.95630 -13.76232 -13.40202 -13.37337 -13.04257 -12.83892 -12.80406 -12.78304 -12.33956 -12.15171 -12.02774 -11.96062 -11.73822 -11.48210 -11.17219 -10.90707 -10.50220 -10.12149 -9.72021 -9.02762 -7.92516 -5.22030 -0.61365 -0.20267 1.45817 1.53386 1.54112 1.59919 1.79350 2.35395 2.44348 2.58755 2.76453 3.03137 3.14909 3.37623 3.40748 3.61135 3.70517 3.79167 3.86158 3.86915 3.97604 4.06677 4.16743 4.25297 4.34964 4.45481 4.51559 4.58719 4.67552 4.70099 4.74185 4.80254 4.88501 4.95384 5.05239 5.13706 5.22876 5.35253 5.38587 5.45522 5.57338 6.28233 6.39741 6.96263 7.37238 8.07526 8.32295 9.29690 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003353 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.925636 B = 8349.543744 C =10263.915481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.125 4.125 5 C 0.164 3.836 6 H 0.064 0.936 7 N -0.719 5.719 8 C -0.244 4.244 9 H 0.078 0.922 10 C -0.063 4.063 11 N -0.964 5.964 12 Si 0.964 3.036 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.282 1.282 16 C 0.079 3.921 17 N -0.600 5.600 18 C 0.572 3.428 19 O -0.571 6.571 20 C -0.152 4.152 21 C -0.040 4.040 22 C -0.152 4.152 23 C 0.162 3.838 24 F -0.121 7.121 25 C -0.221 4.221 26 C 0.317 3.683 27 F -0.204 7.204 28 F -0.203 7.203 29 C -0.005 4.005 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.379 0.621 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.162 0.838 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 5.250 16.515 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.053 3.947 6 H 0.082 0.918 7 N -0.358 5.358 8 C -0.376 4.376 9 H 0.096 0.904 10 C -0.256 4.256 11 N -0.613 5.613 12 Si 0.793 3.207 13 H -0.203 1.203 14 H -0.226 1.226 15 H -0.208 1.208 16 C -0.046 4.046 17 N -0.332 5.332 18 C 0.362 3.638 19 O -0.452 6.452 20 C -0.156 4.156 21 C -0.058 4.058 22 C -0.170 4.170 23 C 0.142 3.858 24 F -0.099 7.099 25 C -0.222 4.222 26 C 0.264 3.736 27 F -0.185 7.185 28 F -0.184 7.184 29 C -0.024 4.024 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.212 0.788 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.179 0.821 40 H 0.193 0.807 41 H 0.173 0.827 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.503 5.794 16.758 18.294 hybrid contribution 0.650 -0.637 -0.258 0.946 sum -3.853 5.157 16.500 17.711 Atomic orbital electron populations 1.22057 0.93866 1.02317 1.02848 1.21632 0.95125 0.96163 0.83632 0.90549 1.22956 0.97707 0.99554 0.96135 1.21459 0.96006 0.88148 0.89064 0.91771 1.42385 1.08462 1.28909 1.56050 1.19554 0.88063 1.06142 1.23825 0.90417 1.25415 1.00530 0.99223 1.00420 1.69775 1.32557 1.22608 1.36393 0.85367 0.80491 0.77327 0.77476 1.20254 1.22605 1.20815 1.23523 0.94623 0.87679 0.98789 1.48493 1.51299 1.28842 1.04554 1.17988 0.79040 0.84940 0.81845 1.90747 1.44794 1.25838 1.83817 1.19873 1.06813 0.94746 0.94124 1.22051 0.91532 0.91548 1.00714 1.21410 1.02190 1.03152 0.90280 1.17555 0.95853 0.86499 0.85866 1.91550 1.86992 1.72496 1.58888 1.20345 1.10776 0.93643 0.97485 1.20458 0.73831 0.86743 0.92612 1.93020 1.61164 1.67125 1.97179 1.93020 1.50308 1.86628 1.88484 1.20870 0.91026 1.00451 0.90062 0.92433 0.93185 0.89557 0.89058 0.90122 0.78813 0.93985 0.90499 0.90422 0.82106 0.80690 0.82698 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.10 71.98 0.66 -2.98 16 2 C 0.14 3.59 3.43 45.34 0.16 3.75 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -3.38 6.12 31.78 0.19 -3.19 16 5 C 0.16 5.44 3.71 46.38 0.17 5.61 16 6 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 7 N -0.72 -31.04 5.24 -316.35 -1.66 -32.70 16 8 C -0.24 -12.00 9.96 84.03 0.84 -11.16 16 9 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 10 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 11 N -0.96 -54.05 13.06 21.65 0.28 -53.77 16 12 Si 0.96 42.53 29.55 68.60 2.03 44.56 16 13 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 C 0.08 2.28 4.69 86.86 0.41 2.68 16 17 N -0.60 -16.82 3.06 -791.55 -2.43 -19.24 16 18 C 0.57 17.17 7.39 86.75 0.64 17.81 16 19 O -0.57 -20.21 15.87 -3.93 -0.06 -20.27 16 20 C -0.15 -3.90 5.67 -20.09 -0.11 -4.01 16 21 C -0.04 -0.87 8.07 22.52 0.18 -0.69 16 22 C -0.15 -2.76 10.01 22.27 0.22 -2.54 16 23 C 0.16 3.01 7.25 22.47 0.16 3.17 16 24 F -0.12 -2.02 16.18 44.97 0.73 -1.29 16 25 C -0.22 -4.53 5.37 -19.86 -0.11 -4.64 16 26 C 0.32 5.72 5.43 71.24 0.39 6.10 16 27 F -0.20 -4.38 17.25 44.97 0.78 -3.60 16 28 F -0.20 -4.31 17.25 44.97 0.78 -3.54 16 29 C 0.00 -0.12 9.13 22.52 0.21 0.08 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.35 7.10 -2.39 -0.02 1.33 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 2.21 7.72 -2.39 -0.02 2.19 16 35 H 0.38 17.67 7.76 -92.71 -0.72 16.95 16 36 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 37 H 0.08 2.21 6.82 -2.39 -0.02 2.19 16 38 H 0.08 2.20 6.85 -2.39 -0.02 2.19 16 39 H 0.16 3.44 4.62 -2.91 -0.01 3.43 16 40 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.16 1.78 7.12 -2.39 -0.02 1.77 16 42 H 0.14 3.57 7.84 -2.91 -0.02 3.55 16 Total: -1.00 -61.07 360.30 5.28 -55.79 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.37 Total: 26.86 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.47 Total: 7.20 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -3.80 Total: -105.71 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 2.28 Total: -8.43 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -61.07 5.28 -55.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.959 kcal (2) G-P(sol) polarization free energy of solvation -61.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds