Wall clock time and date at job start Wed Apr 1 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.86962 * 2 1 4 4 C 1.54328 * 109.88322 * 238.98923 * 2 1 3 5 5 C 1.55150 * 102.94435 * 218.22969 * 4 2 1 6 6 H 1.08995 * 111.00600 * 153.57227 * 5 4 2 7 7 N 1.46502 * 111.00831 * 277.43145 * 5 4 2 8 8 C 1.36938 * 120.00343 * 198.64694 * 7 5 4 9 9 H 1.07999 * 119.99752 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00200 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00118 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00034 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47028 * 89.99803 * 12 10 8 14 14 H 1.48498 * 109.47498 * 210.00034 * 12 10 8 15 15 H 1.48506 * 109.47350 * 330.00305 * 12 10 8 16 16 C 1.54917 * 101.58041 * 35.50197 * 5 4 2 17 17 N 1.47287 * 110.00736 * 121.06267 * 2 1 3 18 18 C 1.34774 * 125.79123 * 298.43714 * 17 2 1 19 19 O 1.21573 * 119.99562 * 181.07094 * 18 17 2 20 20 C 1.47682 * 120.00244 * 1.06869 * 18 17 2 21 21 C 1.39666 * 120.16864 * 351.65280 * 20 18 17 22 22 C 1.37860 * 119.87628 * 179.69877 * 21 20 18 23 23 C 1.38456 * 120.22153 * 0.60073 * 22 21 20 24 24 C 1.38207 * 120.33722 * 359.67452 * 23 22 21 25 25 C 1.50693 * 119.93690 * 179.97438 * 24 23 22 26 26 F 1.39907 * 109.46662 * 120.02485 * 25 24 23 27 27 F 1.39898 * 109.47555 * 240.01960 * 25 24 23 28 28 C 1.38319 * 120.11501 * 0.02588 * 24 23 22 29 29 F 1.35107 * 120.10741 * 180.02562 * 28 24 23 30 30 H 1.09005 * 109.46588 * 168.47815 * 1 2 3 31 31 H 1.08994 * 109.47095 * 288.47593 * 1 2 3 32 32 H 1.08998 * 109.47512 * 48.48178 * 1 2 3 33 33 H 1.09006 * 110.71876 * 99.86677 * 4 2 1 34 34 H 1.08996 * 110.86997 * 336.66493 * 4 2 1 35 35 H 0.97005 * 119.99807 * 18.64277 * 7 5 4 36 36 H 0.97004 * 120.00428 * 179.97438 * 11 10 8 37 37 H 1.08993 * 110.36491 * 81.82940 * 16 5 4 38 38 H 1.09007 * 110.36759 * 204.04498 * 16 5 4 39 39 H 1.08001 * 120.05322 * 359.97438 * 21 20 18 40 40 H 1.08002 * 119.88457 * 180.32173 * 22 21 20 41 41 H 1.07993 * 119.82803 * 179.69551 * 23 22 21 42 42 H 1.09000 * 109.47895 * 0.02689 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7477 -1.2438 5 6 3.2901 -1.5099 -0.6957 6 1 3.4888 -2.4059 -1.2836 7 7 4.4680 -0.6399 -0.6537 8 6 5.7208 -1.1869 -0.5736 9 1 5.8405 -2.2598 -0.5418 10 6 6.8369 -0.3626 -0.5343 11 7 8.0411 -0.8884 -0.4579 12 14 6.6300 1.4931 -0.5914 13 1 6.5003 2.0194 0.7910 14 1 7.8158 2.1036 -1.2444 15 1 5.4092 1.8315 -1.3664 16 6 2.8197 -1.8769 0.7340 17 7 2.0339 -0.7141 1.1855 18 6 1.8144 -0.3647 2.4685 19 8 2.2993 -1.0220 3.3690 20 6 0.9850 0.8167 2.7806 21 6 0.5710 1.6735 1.7583 22 6 -0.2084 2.7711 2.0557 23 6 -0.5716 3.0336 3.3657 24 6 -0.1623 2.1949 4.3851 25 6 -0.5624 2.4894 5.8077 26 9 -1.3047 1.4174 6.3148 27 9 0.5852 2.6717 6.5868 28 6 0.6149 1.0863 4.1018 29 9 1.0145 0.2662 5.0983 30 1 -0.3633 -1.0070 -0.2053 31 1 -0.3633 0.3257 0.9746 32 1 -0.3634 0.6812 -0.7694 33 1 2.3503 -0.0430 -2.0213 34 1 1.3075 -1.4454 -1.6216 35 1 4.3605 0.3238 -0.6826 36 1 8.8211 -0.3123 -0.4308 37 1 2.1958 -2.7703 0.7104 38 1 3.6781 -2.0316 1.3878 39 1 0.8573 1.4740 0.7363 40 1 -0.5329 3.4309 1.2646 41 1 -1.1782 3.8979 3.5920 42 1 -1.1676 3.3955 5.8349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988848921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:56 Heat of formation + Delta-G solvation = -86.596324 kcal Electronic energy + Delta-G solvation = -30854.928427 eV Core-core repulsion = 26194.685581 eV Total energy + Delta-G solvation = -4660.242845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -49.48482 -48.78865 -47.23711 -40.94246 -38.84398 -37.58643 -34.80750 -33.05713 -31.63996 -31.30325 -31.00117 -29.20269 -26.45900 -26.05458 -24.47735 -23.36959 -22.36893 -22.09244 -20.36688 -19.54660 -18.05997 -18.00465 -17.75292 -17.51781 -17.43760 -16.38023 -16.26683 -15.92688 -15.64081 -15.49917 -14.94571 -14.60802 -14.38438 -14.11264 -14.08695 -13.59621 -13.58866 -13.46367 -13.27346 -13.08514 -12.89993 -12.64532 -12.51855 -12.38832 -12.14149 -12.05898 -11.85808 -11.55771 -11.23490 -11.14407 -10.89210 -10.70483 -10.54883 -10.18650 -9.78265 -9.66743 -9.39291 -9.15499 -9.10872 -8.44131 -7.37954 -5.84194 -3.21809 0.33362 0.61315 2.60611 2.96167 3.27941 3.30188 3.34217 3.40052 3.41064 3.66980 3.83070 4.08392 4.26783 4.38869 4.51733 4.52146 4.60532 4.67741 4.74106 4.76870 4.92764 5.09579 5.13821 5.27244 5.34582 5.36848 5.49442 5.54906 5.61186 5.64676 5.71748 5.81263 5.86705 5.99580 6.06614 6.14012 6.25652 6.34605 6.53508 6.65233 7.65064 7.89332 8.27597 8.34147 9.10383 9.82586 9.99794 11.33646 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.003536 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.517462 B = 7916.272947 C = 8398.594071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.113 3.887 3 H 0.084 0.916 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.083 0.917 7 N -0.736 5.736 8 C -0.251 4.251 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.882 3.118 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.079 3.921 17 N -0.594 5.594 18 C 0.569 3.431 19 O -0.522 6.522 20 C -0.175 4.175 21 C -0.066 4.066 22 C -0.154 4.154 23 C -0.032 4.032 24 C -0.232 4.232 25 C 0.320 3.680 26 F -0.196 7.196 27 F -0.195 7.195 28 C 0.200 3.800 29 F -0.102 7.102 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.361 0.639 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.183 0.817 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.505 9.972 2.700 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.009 3.991 3 H 0.102 0.898 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.101 0.899 7 N -0.378 5.378 8 C -0.381 4.381 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.712 3.288 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 C -0.045 4.045 17 N -0.327 5.327 18 C 0.357 3.643 19 O -0.399 6.399 20 C -0.179 4.179 21 C -0.084 4.084 22 C -0.172 4.172 23 C -0.051 4.051 24 C -0.234 4.234 25 C 0.266 3.734 26 F -0.177 7.177 27 F -0.176 7.176 28 C 0.179 3.821 29 F -0.080 7.080 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.194 0.806 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.199 0.801 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.973 9.397 3.345 25.965 hybrid contribution 0.104 1.240 0.372 1.299 sum -23.869 10.638 3.717 26.395 Atomic orbital electron populations 1.22952 0.94917 1.03659 1.03022 1.22031 0.93744 0.96555 0.86727 0.89843 1.23087 0.98684 1.00214 0.95653 1.21332 0.85926 0.94468 0.92048 0.89928 1.42657 1.02090 1.03778 1.89226 1.19041 0.81323 0.94038 1.43684 0.88889 1.24659 0.95107 0.97281 1.01520 1.69689 0.97106 1.34151 1.56543 0.86603 0.76923 0.87455 0.77827 1.21055 1.21558 1.20387 1.23331 0.95084 0.86340 0.99784 1.48318 1.51534 1.29092 1.03715 1.17460 0.80937 0.83907 0.81986 1.90861 1.50489 1.53775 1.44781 1.20123 1.05176 1.00075 0.92505 1.23152 0.92128 0.91162 1.01915 1.21162 1.00953 0.98504 0.96573 1.21010 0.95489 0.96822 0.91762 1.20425 1.07168 0.99263 0.96559 1.20248 0.80372 0.89105 0.83670 1.93044 1.76715 1.59526 1.88447 1.93057 1.52348 1.95586 1.76571 1.17450 0.92467 0.87592 0.84566 1.91653 1.87614 1.70044 1.58664 0.91300 0.90695 0.90647 0.89502 0.89770 0.80601 0.92903 0.92189 0.89253 0.80085 0.83902 0.83939 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 7.84 37.16 0.29 -1.31 16 2 C 0.11 1.34 2.71 -66.81 -0.18 1.16 16 3 H 0.08 0.95 6.24 -51.93 -0.32 0.63 16 4 C -0.14 -1.65 6.04 -24.90 -0.15 -1.80 16 5 C 0.17 2.94 3.69 -65.78 -0.24 2.70 16 6 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 7 N -0.74 -16.17 5.07 -51.35 -0.26 -16.43 16 8 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 9 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 10 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 11 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 12 Si 0.88 21.70 27.73 -169.99 -4.71 16.98 16 13 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 16 C 0.08 1.38 6.60 -2.52 -0.02 1.37 16 17 N -0.59 -9.58 3.08 -165.63 -0.51 -10.09 16 18 C 0.57 10.37 7.65 -12.40 -0.09 10.28 16 19 O -0.52 -11.76 15.63 5.30 0.08 -11.67 16 20 C -0.17 -2.55 5.35 -104.91 -0.56 -3.11 16 21 C -0.07 -0.69 6.22 -39.19 -0.24 -0.93 16 22 C -0.15 -1.13 10.03 -39.64 -0.40 -1.53 16 23 C -0.03 -0.23 9.66 -39.51 -0.38 -0.62 16 24 C -0.23 -2.51 5.37 -104.61 -0.56 -3.07 16 25 C 0.32 3.10 5.16 36.00 0.19 3.29 16 26 F -0.20 -2.34 17.07 2.25 0.04 -2.30 16 27 F -0.19 -2.46 17.07 2.25 0.04 -2.42 16 28 C 0.20 2.98 7.10 -38.96 -0.28 2.70 16 29 F -0.10 -1.85 14.78 2.25 0.03 -1.82 16 30 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 31 H 0.07 0.69 4.25 -51.95 -0.22 0.47 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 35 H 0.36 7.82 5.68 -40.82 -0.23 7.59 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.93 8.02 -51.93 -0.42 1.51 16 39 H 0.18 1.67 2.15 -54.74 -0.12 1.55 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.45 7.93 -52.49 -0.42 0.03 16 42 H 0.13 0.57 7.87 -51.93 -0.41 0.16 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -36.42 349.22 -6.79 -43.21 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.65 Total: 5.00 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.89 Total: 2.35 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.01 Total: -54.60 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.11 Total: -6.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.42 -6.79 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.388 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds