Wall clock time and date at job start Wed Apr 1 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.87162 * 2 1 4 4 C 1.54315 * 109.88397 * 121.01605 * 2 1 3 5 5 C 1.55156 * 102.94391 * 97.22307 * 4 2 1 6 6 H 1.09001 * 111.00567 * 277.38981 * 5 4 2 7 7 N 1.46500 * 111.00202 * 153.57582 * 5 4 2 8 8 C 1.36942 * 119.99715 * 155.00461 * 7 5 4 9 9 H 1.07996 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99883 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99921 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46699 * 270.00065 * 12 10 8 14 14 H 1.48497 * 109.47070 * 29.99776 * 12 10 8 15 15 H 1.48495 * 109.47057 * 150.00164 * 12 10 8 16 16 C 1.54914 * 101.57992 * 35.50304 * 5 4 2 17 17 N 1.47020 * 109.88081 * 238.82821 * 2 1 3 18 18 C 1.34773 * 125.65512 * 59.53943 * 17 2 1 19 19 O 1.21570 * 119.99831 * 354.75982 * 18 17 2 20 20 C 1.47690 * 120.00448 * 174.75261 * 18 17 2 21 21 C 1.39655 * 120.16547 * 323.72068 * 20 18 17 22 22 C 1.37861 * 119.87351 * 179.69167 * 21 20 18 23 23 C 1.38458 * 120.22072 * 0.58011 * 22 21 20 24 24 C 1.38199 * 120.33765 * 359.71604 * 23 22 21 25 25 C 1.50702 * 119.94262 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.46969 * 29.97831 * 25 24 23 27 27 F 1.39900 * 109.47297 * 149.97463 * 25 24 23 28 28 C 1.38323 * 120.11733 * 359.97438 * 24 23 22 29 29 F 1.35102 * 120.11236 * 179.97438 * 28 24 23 30 30 H 1.08999 * 109.46946 * 298.98535 * 1 2 3 31 31 H 1.08998 * 109.46736 * 58.98642 * 1 2 3 32 32 H 1.08998 * 109.46698 * 178.98081 * 1 2 3 33 33 H 1.08999 * 110.71918 * 338.86330 * 4 2 1 34 34 H 1.08998 * 110.87429 * 215.66263 * 4 2 1 35 35 H 0.96993 * 120.00464 * 335.00224 * 7 5 4 36 36 H 0.97001 * 120.00024 * 359.97438 * 11 10 8 37 37 H 1.09006 * 110.36518 * 81.82821 * 16 5 4 38 38 H 1.09003 * 110.36733 * 204.15001 * 16 5 4 39 39 H 1.07997 * 120.06765 * 359.97438 * 21 20 18 40 40 H 1.08006 * 119.88929 * 180.32026 * 22 21 20 41 41 H 1.08004 * 119.82893 * 179.74189 * 23 22 21 42 42 H 1.08999 * 109.47112 * 269.98073 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3519 -2.1685 0.6954 6 1 1.4454 -2.7729 0.6649 7 7 3.3938 -2.8291 1.4856 8 6 3.4569 -4.1963 1.5286 9 1 2.7390 -4.7876 0.9797 10 6 4.4444 -4.8223 2.2769 11 7 5.3197 -4.1016 2.9454 12 14 4.5302 -6.6874 2.3362 13 1 3.7059 -7.1850 3.4667 14 1 4.0125 -7.2475 1.0620 15 1 5.9402 -7.1122 2.5270 16 6 2.8569 -1.8508 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.7751 -0.3881 -2.4652 19 8 1.0012 0.5142 -2.7197 20 6 2.4361 -1.1251 -3.5611 21 6 3.7548 -1.5619 -3.4178 22 6 4.3638 -2.2550 -4.4422 23 6 3.6765 -2.5088 -5.6170 24 6 2.3733 -2.0753 -5.7708 25 6 1.6333 -2.3570 -7.0531 26 9 2.1057 -3.5494 -7.6118 27 9 0.2654 -2.4774 -6.7854 28 6 1.7465 -1.3843 -4.7496 29 9 0.4727 -0.9602 -4.9003 30 1 -0.3633 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8808 32 1 -0.3633 -1.0275 -0.0183 33 1 1.2919 -0.7862 2.0211 34 1 2.9651 -0.2821 1.6214 35 1 4.0388 -2.2981 1.9782 36 1 5.2749 -3.1331 2.9149 37 1 3.9092 -1.5676 -0.7107 38 1 2.7089 -2.7100 -1.3886 39 1 4.2950 -1.3612 -2.5044 40 1 5.3820 -2.5974 -4.3295 41 1 4.1612 -3.0487 -6.4170 42 1 1.7958 -1.5380 -7.7538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988848925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:59 Heat of formation + Delta-G solvation = -133.000542 kcal Electronic energy + Delta-G solvation = -30333.146174 eV Core-core repulsion = 25670.891090 eV Total energy + Delta-G solvation = -4662.255083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -49.49742 -48.96737 -47.28584 -40.49794 -38.94986 -37.46211 -34.58628 -33.13948 -31.62274 -31.40646 -30.70215 -28.20740 -26.59272 -25.67720 -24.64467 -23.61189 -22.37809 -21.87590 -20.52341 -19.36784 -18.05749 -17.86237 -17.68899 -17.57322 -17.45990 -16.48391 -16.32896 -15.86729 -15.64249 -15.40861 -15.07053 -14.57017 -14.22307 -14.12839 -13.75880 -13.72735 -13.63063 -13.43812 -13.32634 -13.17779 -13.08795 -12.72554 -12.63480 -12.41215 -12.18124 -11.95883 -11.91466 -11.29967 -11.12005 -11.06178 -10.77032 -10.63818 -10.32752 -10.10374 -9.90610 -9.51213 -9.32371 -9.13177 -9.10191 -8.54106 -7.25705 -6.25801 -3.29136 0.41267 0.63644 2.56000 2.82962 3.24834 3.34386 3.44785 3.47970 3.62146 3.69854 3.81340 4.09280 4.32588 4.51407 4.53462 4.61472 4.63525 4.83224 4.94125 4.99438 5.10918 5.21692 5.31406 5.46376 5.51197 5.51779 5.59513 5.67837 5.73358 5.75697 5.88668 5.90262 5.95045 6.02734 6.13555 6.27295 6.32490 6.39201 6.49412 6.66279 7.55605 7.66653 8.11969 8.59717 9.02358 9.89049 10.01749 11.21801 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.003536 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.923504 B = 7915.809292 C = 9663.440578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.070 0.930 7 N -0.722 5.722 8 C -0.342 4.342 9 H 0.067 0.933 10 C -0.037 4.037 11 N -0.939 5.939 12 Si 1.081 2.919 13 H -0.294 1.294 14 H -0.293 1.293 15 H -0.287 1.287 16 C 0.069 3.931 17 N -0.601 5.601 18 C 0.573 3.427 19 O -0.532 6.532 20 C -0.163 4.163 21 C -0.037 4.037 22 C -0.135 4.135 23 C -0.038 4.038 24 C -0.221 4.221 25 C 0.320 3.680 26 F -0.196 7.196 27 F -0.192 7.192 28 C 0.184 3.816 29 F -0.109 7.109 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.370 0.630 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 6.818 -17.082 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.088 0.912 7 N -0.363 5.363 8 C -0.473 4.473 9 H 0.085 0.915 10 C -0.235 4.235 11 N -0.583 5.583 12 Si 0.911 3.089 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.213 1.213 16 C -0.057 4.057 17 N -0.334 5.334 18 C 0.361 3.639 19 O -0.410 6.410 20 C -0.167 4.167 21 C -0.055 4.055 22 C -0.153 4.153 23 C -0.057 4.057 24 C -0.223 4.223 25 C 0.267 3.733 26 F -0.177 7.177 27 F -0.173 7.173 28 C 0.163 3.837 29 F -0.087 7.087 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.320 5.833 -16.740 18.035 hybrid contribution -0.846 1.336 -0.556 1.676 sum -4.166 7.169 -17.296 19.181 Atomic orbital electron populations 1.22161 0.94711 1.02532 1.02673 1.21532 0.94748 0.95776 0.84192 0.90920 1.23059 1.01770 0.97081 0.95946 1.21215 0.92732 0.91204 0.88167 0.91185 1.42330 1.33620 1.04294 1.56021 1.20087 1.14977 0.82518 1.29689 0.91465 1.25790 0.94307 1.06892 0.96552 1.70873 1.37281 1.06505 1.43651 0.83223 0.76138 0.73962 0.75554 1.22138 1.22004 1.21278 1.23674 0.94620 0.87198 1.00174 1.48464 1.50156 1.30633 1.04193 1.17546 0.81539 0.83386 0.81433 1.90787 1.35557 1.31319 1.83306 1.19997 0.96382 1.05633 0.94663 1.21690 0.92416 0.92015 0.99427 1.21215 1.01410 0.99839 0.92799 1.21021 0.91611 0.94793 0.98227 1.20437 0.97715 1.07512 0.96621 1.20149 0.75462 0.85491 0.92235 1.93010 1.88151 1.50272 1.86246 1.93063 1.32648 1.96588 1.94995 1.17223 0.79579 0.94324 0.92566 1.91622 1.34642 1.86884 1.95508 0.91819 0.91132 0.92395 0.89931 0.90660 0.79568 0.93255 0.91174 0.90955 0.83323 0.83674 0.83641 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.04 37.16 0.34 -1.92 16 2 C 0.14 2.02 3.53 -66.96 -0.24 1.79 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.07 6.14 -24.90 -0.15 -2.23 16 5 C 0.18 3.23 3.71 -65.78 -0.24 2.99 16 6 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 7 N -0.72 -16.24 5.24 -51.35 -0.27 -16.51 16 8 C -0.34 -8.86 9.96 -15.06 -0.15 -9.01 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.04 -1.01 5.50 -17.43 -0.10 -1.10 16 11 N -0.94 -27.23 13.70 55.49 0.76 -26.47 16 12 Si 1.08 24.54 29.92 -169.99 -5.09 19.46 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.07 1.10 4.90 -2.52 -0.01 1.09 16 17 N -0.60 -9.26 3.08 -164.17 -0.51 -9.76 16 18 C 0.57 9.35 7.21 -12.40 -0.09 9.26 16 19 O -0.53 -9.99 14.85 5.30 0.08 -9.91 16 20 C -0.16 -2.29 5.42 -104.92 -0.57 -2.86 16 21 C -0.04 -0.43 8.17 -39.19 -0.32 -0.75 16 22 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 23 C -0.04 -0.34 9.39 -39.51 -0.37 -0.71 16 24 C -0.22 -2.40 5.74 -104.60 -0.60 -3.00 16 25 C 0.32 3.03 5.59 36.01 0.20 3.23 16 26 F -0.20 -1.94 16.47 2.25 0.04 -1.90 16 27 F -0.19 -2.37 15.49 2.25 0.03 -2.34 16 28 C 0.18 2.53 7.08 -38.96 -0.28 2.25 16 29 F -0.11 -1.70 14.30 2.25 0.03 -1.67 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.08 6.62 -51.93 -0.34 0.74 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.17 7.83 -51.93 -0.41 0.76 16 34 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 35 H 0.37 8.57 6.59 -40.82 -0.27 8.30 16 36 H 0.26 7.25 6.77 -40.82 -0.28 6.97 16 37 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 38 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 39 H 0.15 1.67 5.74 -52.49 -0.30 1.37 16 40 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.15 0.93 7.59 -52.48 -0.40 0.53 16 42 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -31.84 355.64 -7.42 -39.26 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.89 Total: 7.11 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.98 Total: -2.62 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.01 Total: -52.74 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.10 Total: -5.91 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.09 Total: 19.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.84 -7.42 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.742 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds