Wall clock time and date at job start Wed Apr 1 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.87162 * 2 1 4 4 C 1.54315 * 109.88397 * 121.01605 * 2 1 3 5 5 C 1.55156 * 102.94391 * 97.22307 * 4 2 1 6 6 H 1.09001 * 111.00567 * 277.38981 * 5 4 2 7 7 N 1.46500 * 111.00202 * 153.57582 * 5 4 2 8 8 C 1.36942 * 119.99715 * 155.00461 * 7 5 4 9 9 H 1.07996 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99883 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99921 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46699 * 270.00065 * 12 10 8 14 14 H 1.48497 * 109.47070 * 29.99776 * 12 10 8 15 15 H 1.48495 * 109.47057 * 150.00164 * 12 10 8 16 16 C 1.54914 * 101.57992 * 35.50304 * 5 4 2 17 17 N 1.47020 * 109.88081 * 238.82821 * 2 1 3 18 18 C 1.34773 * 125.65512 * 59.53943 * 17 2 1 19 19 O 1.21570 * 119.99831 * 354.75982 * 18 17 2 20 20 C 1.47690 * 120.00448 * 174.75261 * 18 17 2 21 21 C 1.39655 * 120.16547 * 323.72068 * 20 18 17 22 22 C 1.37861 * 119.87351 * 179.69167 * 21 20 18 23 23 C 1.38458 * 120.22072 * 0.58011 * 22 21 20 24 24 C 1.38199 * 120.33765 * 359.71604 * 23 22 21 25 25 C 1.50702 * 119.94262 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.46969 * 29.97831 * 25 24 23 27 27 F 1.39900 * 109.47297 * 149.97463 * 25 24 23 28 28 C 1.38323 * 120.11733 * 359.97438 * 24 23 22 29 29 F 1.35102 * 120.11236 * 179.97438 * 28 24 23 30 30 H 1.08999 * 109.46946 * 298.98535 * 1 2 3 31 31 H 1.08998 * 109.46736 * 58.98642 * 1 2 3 32 32 H 1.08998 * 109.46698 * 178.98081 * 1 2 3 33 33 H 1.08999 * 110.71918 * 338.86330 * 4 2 1 34 34 H 1.08998 * 110.87429 * 215.66263 * 4 2 1 35 35 H 0.96993 * 120.00464 * 335.00224 * 7 5 4 36 36 H 0.97001 * 120.00024 * 359.97438 * 11 10 8 37 37 H 1.09006 * 110.36518 * 81.82821 * 16 5 4 38 38 H 1.09003 * 110.36733 * 204.15001 * 16 5 4 39 39 H 1.07997 * 120.06765 * 359.97438 * 21 20 18 40 40 H 1.08006 * 119.88929 * 180.32026 * 22 21 20 41 41 H 1.08004 * 119.82893 * 179.74189 * 23 22 21 42 42 H 1.08999 * 109.47112 * 269.98073 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3519 -2.1685 0.6954 6 1 1.4454 -2.7729 0.6649 7 7 3.3938 -2.8291 1.4856 8 6 3.4569 -4.1963 1.5286 9 1 2.7390 -4.7876 0.9797 10 6 4.4444 -4.8223 2.2769 11 7 5.3197 -4.1016 2.9454 12 14 4.5302 -6.6874 2.3362 13 1 3.7059 -7.1850 3.4667 14 1 4.0125 -7.2475 1.0620 15 1 5.9402 -7.1122 2.5270 16 6 2.8569 -1.8508 -0.7343 17 7 2.0300 -0.7156 -1.1830 18 6 1.7751 -0.3881 -2.4652 19 8 1.0012 0.5142 -2.7197 20 6 2.4361 -1.1251 -3.5611 21 6 3.7548 -1.5619 -3.4178 22 6 4.3638 -2.2550 -4.4422 23 6 3.6765 -2.5088 -5.6170 24 6 2.3733 -2.0753 -5.7708 25 6 1.6333 -2.3570 -7.0531 26 9 2.1057 -3.5494 -7.6118 27 9 0.2654 -2.4774 -6.7854 28 6 1.7465 -1.3843 -4.7496 29 9 0.4727 -0.9602 -4.9003 30 1 -0.3633 0.4980 0.8989 31 1 -0.3633 0.5295 -0.8808 32 1 -0.3633 -1.0275 -0.0183 33 1 1.2919 -0.7862 2.0211 34 1 2.9651 -0.2821 1.6214 35 1 4.0388 -2.2981 1.9782 36 1 5.2749 -3.1331 2.9149 37 1 3.9092 -1.5676 -0.7107 38 1 2.7089 -2.7100 -1.3886 39 1 4.2950 -1.3612 -2.5044 40 1 5.3820 -2.5974 -4.3295 41 1 4.1612 -3.0487 -6.4170 42 1 1.7958 -1.5380 -7.7538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988848925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:59 Heat of formation + Delta-G solvation = -151.380036 kcal Electronic energy + Delta-G solvation = -30333.943168 eV Core-core repulsion = 25670.891090 eV Total energy + Delta-G solvation = -4663.052078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.42326 -49.89048 -48.09497 -41.69309 -39.93964 -38.80570 -36.35166 -34.17492 -33.20561 -32.52959 -31.69921 -29.82428 -27.41115 -26.90584 -25.94847 -25.29467 -23.29396 -23.05322 -21.87440 -20.53093 -19.53959 -19.02370 -18.62965 -18.59462 -18.41190 -17.58733 -17.30798 -17.08069 -16.88978 -16.62536 -16.18951 -15.91879 -15.69525 -15.44506 -14.96584 -14.80940 -14.74055 -14.50780 -14.45677 -14.33951 -14.23500 -13.91083 -13.61900 -13.44924 -13.22095 -13.16490 -12.95211 -12.74589 -12.69880 -12.31468 -12.14500 -12.09872 -11.85098 -11.69331 -11.23459 -11.19208 -10.93548 -10.39560 -10.05510 -9.82697 -9.16133 -8.36541 -5.33928 -0.49217 -0.25195 1.42917 1.62860 1.69518 1.71318 1.85558 2.28893 2.53815 2.71229 2.82488 3.05229 3.08528 3.37587 3.41740 3.57655 3.71059 3.78041 3.81351 3.85097 3.88341 3.97175 4.08925 4.20738 4.33710 4.35896 4.38366 4.58787 4.62255 4.69083 4.73877 4.77991 4.90856 4.95055 5.03032 5.07997 5.13630 5.20079 5.34650 5.50724 5.62795 6.28217 6.52991 6.86212 7.07604 7.96909 8.07258 9.14988 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.003536 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.923504 B = 7915.809292 C = 9663.440578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.172 3.828 6 H 0.057 0.943 7 N -0.731 5.731 8 C -0.334 4.334 9 H 0.066 0.934 10 C -0.091 4.091 11 N -0.972 5.972 12 Si 1.123 2.877 13 H -0.289 1.289 14 H -0.274 1.274 15 H -0.293 1.293 16 C 0.086 3.914 17 N -0.600 5.600 18 C 0.569 3.431 19 O -0.564 6.564 20 C -0.186 4.186 21 C -0.043 4.043 22 C -0.123 4.123 23 C -0.025 4.025 24 C -0.219 4.219 25 C 0.317 3.683 26 F -0.196 7.196 27 F -0.212 7.212 28 C 0.157 3.843 29 F -0.129 7.129 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.366 0.634 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.149 0.851 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 6.177 -18.540 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.100 0.900 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.075 0.925 7 N -0.372 5.372 8 C -0.465 4.465 9 H 0.084 0.916 10 C -0.284 4.284 11 N -0.620 5.620 12 Si 0.949 3.051 13 H -0.216 1.216 14 H -0.199 1.199 15 H -0.220 1.220 16 C -0.039 4.039 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.444 6.444 20 C -0.190 4.190 21 C -0.062 4.062 22 C -0.141 4.141 23 C -0.042 4.042 24 C -0.221 4.221 25 C 0.263 3.737 26 F -0.178 7.178 27 F -0.193 7.193 28 C 0.136 3.864 29 F -0.107 7.107 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.199 0.801 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.167 0.833 40 H 0.195 0.805 41 H 0.198 0.802 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.520 5.213 -18.225 19.123 hybrid contribution -1.128 1.566 -0.169 1.937 sum -3.648 6.779 -18.394 19.940 Atomic orbital electron populations 1.22099 0.94213 1.01981 1.03072 1.21633 0.95146 0.96096 0.83550 0.89956 1.22952 1.02404 0.94753 0.96288 1.21327 0.91121 0.92453 0.89021 0.92451 1.42384 1.34549 1.03407 1.56851 1.20344 1.13946 0.84128 1.28128 0.91621 1.26969 0.94466 1.10125 0.96825 1.70966 1.38938 1.06232 1.45842 0.82666 0.75772 0.70190 0.76502 1.21586 1.19898 1.21981 1.23322 0.94813 0.87347 0.98434 1.48465 1.49962 1.30347 1.04453 1.17957 0.81100 0.83103 0.81955 1.90758 1.37085 1.32807 1.83748 1.19948 0.97552 1.07172 0.94311 1.21776 0.91480 0.92520 1.00401 1.21607 1.02556 0.98026 0.91876 1.21461 0.90610 0.93349 0.98826 1.20681 0.98462 1.06532 0.96402 1.20581 0.74131 0.86474 0.92467 1.93006 1.88017 1.50622 1.86108 1.93024 1.34394 1.96723 1.95189 1.17540 0.79235 0.96032 0.93583 1.91563 1.36023 1.87441 1.95670 0.89359 0.92839 0.93279 0.88869 0.90054 0.80056 0.94124 0.90583 0.91397 0.83309 0.80518 0.80196 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 9.04 71.98 0.65 -3.58 16 2 C 0.14 3.89 3.53 45.34 0.16 4.05 16 3 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 4 C -0.13 -3.59 6.14 31.78 0.20 -3.40 16 5 C 0.17 6.11 3.71 46.38 0.17 6.28 16 6 H 0.06 2.19 8.09 -2.39 -0.02 2.18 16 7 N -0.73 -32.72 5.24 -316.37 -1.66 -34.38 16 8 C -0.33 -17.18 9.96 84.03 0.84 -16.34 16 9 H 0.07 3.34 7.83 -2.91 -0.02 3.32 16 10 C -0.09 -4.93 5.50 84.86 0.47 -4.46 16 11 N -0.97 -56.70 13.70 21.65 0.30 -56.40 16 12 Si 1.12 48.93 29.92 68.60 2.05 50.98 16 13 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 14 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 16 C 0.09 2.72 4.90 86.86 0.43 3.14 16 17 N -0.60 -18.38 3.08 -791.58 -2.44 -20.81 16 18 C 0.57 18.85 7.21 86.74 0.63 19.48 16 19 O -0.56 -21.78 14.85 -3.94 -0.06 -21.84 16 20 C -0.19 -5.21 5.42 -20.05 -0.11 -5.32 16 21 C -0.04 -0.95 8.17 22.52 0.18 -0.76 16 22 C -0.12 -1.90 10.03 22.23 0.22 -1.68 16 23 C -0.02 -0.36 9.39 22.31 0.21 -0.15 16 24 C -0.22 -4.34 5.74 -19.85 -0.11 -4.46 16 25 C 0.32 5.32 5.59 71.24 0.40 5.72 16 26 F -0.20 -3.36 16.47 44.97 0.74 -2.62 16 27 F -0.21 -5.11 15.49 44.97 0.70 -4.42 16 28 C 0.16 4.28 7.08 22.67 0.16 4.44 16 29 F -0.13 -4.17 14.30 44.97 0.64 -3.52 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.65 6.62 -2.39 -0.02 1.64 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 34 H 0.08 2.27 8.00 -2.39 -0.02 2.25 16 35 H 0.37 16.99 6.59 -92.71 -0.61 16.37 16 36 H 0.25 14.24 6.77 -92.71 -0.63 13.61 16 37 H 0.08 2.33 6.91 -2.38 -0.02 2.31 16 38 H 0.07 2.20 7.26 -2.39 -0.02 2.19 16 39 H 0.15 3.17 5.74 -2.91 -0.02 3.15 16 40 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 1.40 7.59 -2.91 -0.02 1.37 16 42 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -70.07 355.64 5.37 -64.70 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.61 Total: 25.35 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.49 Total: 2.96 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.80 Total: -111.60 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 9 Polarization: -12.64 SS G_CDS: 2.08 Total: -10.56 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -70.07 5.37 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988848925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.679 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds