Wall clock time and date at job start Wed Apr 1 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.00016 * 2 1 4 4 C 1.54331 * 109.99304 * 238.96108 * 2 1 3 5 5 C 1.55160 * 103.02114 * 218.66669 * 4 2 1 6 6 H 1.09001 * 111.00332 * 277.23325 * 5 4 2 7 7 N 1.46495 * 111.00608 * 153.38135 * 5 4 2 8 8 C 1.36939 * 120.00231 * 161.35392 * 7 5 4 9 9 H 1.07997 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99840 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99563 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00341 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46892 * 89.99980 * 12 10 8 14 14 H 1.48503 * 109.46939 * 209.99852 * 12 10 8 15 15 H 1.48498 * 109.46862 * 329.99953 * 12 10 8 16 16 C 1.54915 * 101.58057 * 35.30245 * 5 4 2 17 17 N 1.47019 * 109.88226 * 121.09281 * 2 1 3 18 18 C 1.34781 * 125.64887 * 298.39460 * 17 2 1 19 19 O 1.21574 * 119.99963 * 3.75368 * 18 17 2 20 20 C 1.47688 * 120.00228 * 183.75205 * 18 17 2 21 21 C 1.39669 * 120.16795 * 324.19208 * 20 18 17 22 22 C 1.37848 * 119.88067 * 179.97438 * 21 20 18 23 23 C 1.50697 * 119.89176 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47261 * 150.00107 * 23 22 21 25 25 F 1.39904 * 109.47263 * 29.99611 * 23 22 21 26 26 C 1.38465 * 120.21615 * 0.25618 * 22 21 20 27 27 C 1.38196 * 120.34192 * 359.48494 * 26 22 21 28 28 C 1.38322 * 120.11356 * 0.51763 * 27 26 22 29 29 F 1.35100 * 120.11212 * 179.72376 * 28 27 26 30 30 H 1.08998 * 109.47081 * 300.36230 * 1 2 3 31 31 H 1.09003 * 109.47119 * 60.35948 * 1 2 3 32 32 H 1.08999 * 109.47458 * 180.35877 * 1 2 3 33 33 H 1.09003 * 110.85403 * 100.19887 * 4 2 1 34 34 H 1.08995 * 110.66500 * 337.04731 * 4 2 1 35 35 H 0.97006 * 119.99872 * 341.34739 * 7 5 4 36 36 H 0.97002 * 120.00118 * 180.02562 * 11 10 8 37 37 H 1.08995 * 110.36543 * 204.15079 * 16 5 4 38 38 H 1.09003 * 110.36054 * 81.83166 * 16 5 4 39 39 H 1.08002 * 120.05612 * 0.02562 * 21 20 18 40 40 H 1.09003 * 109.47323 * 270.00231 * 23 22 21 41 41 H 1.08001 * 119.82882 * 179.72130 * 26 22 21 42 42 H 1.07997 * 119.94302 * 180.25574 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1669 -0.8769 -0.6578 7 7 3.5476 -2.7242 -1.4811 8 6 4.7734 -3.3314 -1.4188 9 1 5.5478 -2.9209 -0.7877 10 6 5.0207 -4.4742 -2.1667 11 7 6.1992 -5.0574 -2.1072 12 14 3.6811 -5.1846 -3.2578 13 1 3.7724 -4.5798 -4.6110 14 1 3.8546 -6.6558 -3.3603 15 1 2.3516 -4.8827 -2.6693 16 6 2.8099 -1.8824 0.7370 17 7 2.0299 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0857 0.5829 2.7201 20 6 2.4399 -1.1238 3.5614 21 6 2.6111 -2.5053 3.4480 22 6 3.2028 -3.2105 4.4740 23 6 3.3872 -4.7012 4.3521 24 9 4.5209 -5.0914 5.0729 25 9 3.5505 -5.0423 3.0052 26 6 3.6229 -2.5546 5.6188 27 6 3.4628 -1.1872 5.7384 28 6 2.8708 -0.4658 4.7174 29 9 2.7092 0.8702 4.8368 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.3598 -0.0451 -2.0192 34 1 1.3066 -1.4405 -1.6224 35 1 2.8521 -3.0927 -2.0482 36 1 6.3722 -5.8559 -2.6301 37 1 3.6654 -2.0411 1.3934 38 1 2.1801 -2.7717 0.7116 39 1 2.2813 -3.0199 2.5575 40 1 2.5098 -5.2098 4.7517 41 1 4.0816 -3.1140 6.4207 42 1 3.7966 -0.6815 6.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988850292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:24 Heat of formation + Delta-G solvation = -128.444771 kcal Electronic energy + Delta-G solvation = -30715.337060 eV Core-core repulsion = 26053.279530 eV Total energy + Delta-G solvation = -4662.057530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.11398 -49.05719 -47.06564 -40.51057 -38.92650 -37.46465 -34.40375 -32.76601 -31.94836 -31.59939 -30.68050 -28.97497 -26.24162 -25.75097 -24.63284 -23.47623 -22.71492 -21.28189 -20.50012 -19.40440 -17.85714 -17.72183 -17.58487 -17.53058 -17.35389 -16.72524 -16.31298 -16.19468 -15.74740 -15.08143 -14.52558 -14.46081 -14.14150 -13.88617 -13.79739 -13.67355 -13.50759 -13.41547 -13.34224 -13.19943 -13.00976 -12.69293 -12.51703 -12.35030 -12.32864 -11.97429 -11.73443 -11.46239 -11.25368 -11.14766 -10.86321 -10.75088 -10.44458 -10.14597 -9.90003 -9.68015 -9.45569 -9.13056 -9.07079 -8.53257 -7.43467 -5.86200 -3.25125 0.42650 0.70502 2.55108 2.88668 3.28415 3.30353 3.33084 3.39804 3.47916 3.84571 4.02192 4.12996 4.34896 4.50039 4.54663 4.69271 4.75652 4.84699 4.95224 4.99230 5.06466 5.29099 5.31602 5.40101 5.45509 5.50950 5.60640 5.62123 5.67307 5.71848 5.85084 5.86447 5.92285 5.98446 6.16260 6.26348 6.29281 6.34059 6.49429 6.64247 7.55676 7.86722 8.12613 8.31796 9.07837 9.79729 9.96985 11.31298 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.004834 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.717905 B = 5790.868152 C = 8170.495360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.066 3.934 17 N -0.601 5.601 18 C 0.574 3.426 19 O -0.533 6.533 20 C -0.163 4.163 21 C -0.027 4.027 22 C -0.187 4.187 23 C 0.315 3.685 24 F -0.198 7.198 25 F -0.185 7.185 26 C -0.037 4.037 27 C -0.164 4.164 28 C 0.169 3.831 29 F -0.117 7.117 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.365 0.635 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 5.248 14.407 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.179 4.179 5 C 0.066 3.934 6 H 0.092 0.908 7 N -0.376 5.376 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.203 1.203 16 C -0.059 4.059 17 N -0.334 5.334 18 C 0.362 3.638 19 O -0.411 6.411 20 C -0.167 4.167 21 C -0.045 4.045 22 C -0.188 4.188 23 C 0.262 3.738 24 F -0.179 7.179 25 F -0.166 7.166 26 C -0.055 4.055 27 C -0.183 4.183 28 C 0.148 3.852 29 F -0.095 7.095 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.594 5.720 14.600 18.382 hybrid contribution -0.690 -0.583 -0.778 1.192 sum -10.283 5.137 13.822 17.978 Atomic orbital electron populations 1.22145 0.94833 1.02264 1.02733 1.21546 0.94433 0.96238 0.84090 0.90538 1.23058 0.98876 0.99817 0.96100 1.21254 0.95076 0.88820 0.88213 0.90757 1.42652 1.13944 1.29086 1.51922 1.19038 0.89094 1.06729 1.23550 0.89001 1.24666 0.96365 0.97728 0.99645 1.69697 1.21144 1.22036 1.44414 0.86594 0.82024 0.78812 0.81306 1.20959 1.21614 1.20270 1.23715 0.94855 0.87235 1.00102 1.48492 1.51810 1.28866 1.04277 1.17538 0.81254 0.83639 0.81402 1.90789 1.37837 1.29175 1.83287 1.19939 1.06451 0.94572 0.95692 1.21373 0.92968 0.92124 0.98044 1.20460 1.05761 0.95576 0.97010 1.20220 0.87154 0.90968 0.75479 1.93004 1.55170 1.92048 1.77713 1.93125 1.96319 1.93137 1.34043 1.20941 0.94452 0.93531 0.96599 1.21074 1.03269 0.94453 0.99503 1.17740 0.96109 0.77860 0.93457 1.91586 1.92651 1.29444 1.95830 0.91265 0.91730 0.92553 0.89796 0.90453 0.80180 0.92874 0.90364 0.90922 0.82729 0.85970 0.83601 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.10 37.15 0.34 -1.70 16 2 C 0.14 1.93 3.48 -66.95 -0.23 1.70 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -1.95 6.11 -24.89 -0.15 -2.10 16 5 C 0.18 3.10 3.69 -65.78 -0.24 2.86 16 6 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 7 N -0.73 -15.81 5.08 -51.35 -0.26 -16.07 16 8 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 11 N -0.93 -28.02 13.97 55.49 0.78 -27.25 16 12 Si 0.88 20.97 27.73 -169.99 -4.71 16.25 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 16 C 0.07 1.06 4.82 -2.53 -0.01 1.05 16 17 N -0.60 -9.10 3.06 -164.18 -0.50 -9.60 16 18 C 0.57 9.20 7.25 -12.40 -0.09 9.11 16 19 O -0.53 -9.78 15.02 5.30 0.08 -9.70 16 20 C -0.16 -2.28 5.53 -104.91 -0.58 -2.86 16 21 C -0.03 -0.34 7.25 -39.19 -0.28 -0.62 16 22 C -0.19 -2.03 5.73 -104.68 -0.60 -2.63 16 23 C 0.32 3.28 5.65 36.00 0.20 3.49 16 24 F -0.20 -2.29 16.48 2.25 0.04 -2.25 16 25 F -0.19 -2.69 16.47 2.25 0.04 -2.65 16 26 C -0.04 -0.34 9.39 -39.51 -0.37 -0.71 16 27 C -0.16 -1.60 10.01 -39.57 -0.40 -1.99 16 28 C 0.17 2.19 7.24 -38.96 -0.28 1.91 16 29 F -0.12 -1.71 16.13 2.25 0.04 -1.67 16 30 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 35 H 0.36 7.69 5.57 -40.82 -0.23 7.47 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.31 6.59 -51.93 -0.34 0.96 16 38 H 0.07 1.17 7.23 -51.93 -0.38 0.79 16 39 H 0.16 2.00 4.95 -52.49 -0.26 1.74 16 40 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.15 0.96 7.60 -52.49 -0.40 0.56 16 42 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -32.45 355.57 -7.01 -39.46 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.90 Total: 7.23 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.95 Total: 0.89 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.01 Total: -52.93 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.45 -7.01 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988850292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.980 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds