Wall clock time and date at job start Wed Apr 1 2020 02:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.00016 * 2 1 4 4 C 1.54331 * 109.99304 * 238.96108 * 2 1 3 5 5 C 1.55160 * 103.02114 * 218.66669 * 4 2 1 6 6 H 1.09001 * 111.00332 * 277.23325 * 5 4 2 7 7 N 1.46495 * 111.00608 * 153.38135 * 5 4 2 8 8 C 1.36939 * 120.00231 * 161.35392 * 7 5 4 9 9 H 1.07997 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99840 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99563 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00341 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46892 * 89.99980 * 12 10 8 14 14 H 1.48503 * 109.46939 * 209.99852 * 12 10 8 15 15 H 1.48498 * 109.46862 * 329.99953 * 12 10 8 16 16 C 1.54915 * 101.58057 * 35.30245 * 5 4 2 17 17 N 1.47019 * 109.88226 * 121.09281 * 2 1 3 18 18 C 1.34781 * 125.64887 * 298.39460 * 17 2 1 19 19 O 1.21574 * 119.99963 * 3.75368 * 18 17 2 20 20 C 1.47688 * 120.00228 * 183.75205 * 18 17 2 21 21 C 1.39669 * 120.16795 * 324.19208 * 20 18 17 22 22 C 1.37848 * 119.88067 * 179.97438 * 21 20 18 23 23 C 1.50697 * 119.89176 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47261 * 150.00107 * 23 22 21 25 25 F 1.39904 * 109.47263 * 29.99611 * 23 22 21 26 26 C 1.38465 * 120.21615 * 0.25618 * 22 21 20 27 27 C 1.38196 * 120.34192 * 359.48494 * 26 22 21 28 28 C 1.38322 * 120.11356 * 0.51763 * 27 26 22 29 29 F 1.35100 * 120.11212 * 179.72376 * 28 27 26 30 30 H 1.08998 * 109.47081 * 300.36230 * 1 2 3 31 31 H 1.09003 * 109.47119 * 60.35948 * 1 2 3 32 32 H 1.08999 * 109.47458 * 180.35877 * 1 2 3 33 33 H 1.09003 * 110.85403 * 100.19887 * 4 2 1 34 34 H 1.08995 * 110.66500 * 337.04731 * 4 2 1 35 35 H 0.97006 * 119.99872 * 341.34739 * 7 5 4 36 36 H 0.97002 * 120.00118 * 180.02562 * 11 10 8 37 37 H 1.08995 * 110.36543 * 204.15079 * 16 5 4 38 38 H 1.09003 * 110.36054 * 81.83166 * 16 5 4 39 39 H 1.08002 * 120.05612 * 0.02562 * 21 20 18 40 40 H 1.09003 * 109.47323 * 270.00231 * 23 22 21 41 41 H 1.08001 * 119.82882 * 179.72130 * 26 22 21 42 42 H 1.07997 * 119.94302 * 180.25574 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 6 3.2863 -1.5184 -0.6914 6 1 4.1669 -0.8769 -0.6578 7 7 3.5476 -2.7242 -1.4811 8 6 4.7734 -3.3314 -1.4188 9 1 5.5478 -2.9209 -0.7877 10 6 5.0207 -4.4742 -2.1667 11 7 6.1992 -5.0574 -2.1072 12 14 3.6811 -5.1846 -3.2578 13 1 3.7724 -4.5798 -4.6110 14 1 3.8546 -6.6558 -3.3603 15 1 2.3516 -4.8827 -2.6693 16 6 2.8099 -1.8824 0.7370 17 7 2.0299 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0857 0.5829 2.7201 20 6 2.4399 -1.1238 3.5614 21 6 2.6111 -2.5053 3.4480 22 6 3.2028 -3.2105 4.4740 23 6 3.3872 -4.7012 4.3521 24 9 4.5209 -5.0914 5.0729 25 9 3.5505 -5.0423 3.0052 26 6 3.6229 -2.5546 5.6188 27 6 3.4628 -1.1872 5.7384 28 6 2.8708 -0.4658 4.7174 29 9 2.7092 0.8702 4.8368 30 1 -0.3633 0.5194 0.8867 31 1 -0.3633 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.3598 -0.0451 -2.0192 34 1 1.3066 -1.4405 -1.6224 35 1 2.8521 -3.0927 -2.0482 36 1 6.3722 -5.8559 -2.6301 37 1 3.6654 -2.0411 1.3934 38 1 2.1801 -2.7717 0.7116 39 1 2.2813 -3.0199 2.5575 40 1 2.5098 -5.2098 4.7517 41 1 4.0816 -3.1140 6.4207 42 1 3.7966 -0.6815 6.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988850292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:23 Heat of formation + Delta-G solvation = -148.222037 kcal Electronic energy + Delta-G solvation = -30716.194666 eV Core-core repulsion = 26053.279530 eV Total energy + Delta-G solvation = -4662.915137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.14941 -49.97755 -48.01256 -41.68474 -39.92680 -38.78547 -36.13383 -33.87912 -33.46398 -32.83579 -31.71026 -30.55239 -27.20845 -26.83303 -25.92987 -25.05875 -23.70619 -22.45674 -21.91819 -20.55325 -19.67963 -18.73105 -18.62855 -18.44382 -18.32282 -17.90980 -17.45635 -17.22821 -16.80467 -16.56343 -16.10583 -15.58809 -15.49594 -15.06383 -14.95065 -14.79436 -14.64719 -14.51997 -14.44747 -14.30404 -14.29460 -13.99290 -13.75093 -13.67801 -13.31820 -13.20348 -12.95260 -12.90852 -12.68586 -12.33525 -12.10753 -12.06655 -11.93878 -11.82343 -11.57738 -11.16704 -10.96439 -10.36010 -10.07396 -9.80231 -9.34949 -7.99662 -5.36158 -0.51498 -0.18741 1.41771 1.44105 1.45445 1.52239 1.73631 2.27896 2.51200 2.64441 2.92926 3.05207 3.25877 3.29277 3.37689 3.60616 3.63977 3.71534 3.81629 3.91372 4.01260 4.04547 4.12136 4.20760 4.36868 4.40735 4.46101 4.56799 4.64700 4.69168 4.74229 4.78733 4.86105 5.00886 5.03274 5.04193 5.18663 5.29446 5.36073 5.48722 5.78356 6.22488 6.30291 6.88898 7.08418 7.80350 8.00686 9.21244 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.004834 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.717905 B = 5790.868152 C = 8170.495360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.168 3.832 6 H 0.061 0.939 7 N -0.734 5.734 8 C -0.234 4.234 9 H 0.057 0.943 10 C -0.056 4.056 11 N -0.981 5.981 12 Si 0.951 3.049 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.246 1.246 16 C 0.082 3.918 17 N -0.600 5.600 18 C 0.570 3.430 19 O -0.562 6.562 20 C -0.185 4.185 21 C -0.034 4.034 22 C -0.188 4.188 23 C 0.310 3.690 24 F -0.204 7.204 25 F -0.213 7.213 26 C -0.023 4.023 27 C -0.149 4.149 28 C 0.147 3.853 29 F -0.132 7.132 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.371 0.629 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 5.088 15.199 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.377 5.377 8 C -0.365 4.365 9 H 0.075 0.925 10 C -0.248 4.248 11 N -0.630 5.630 12 Si 0.778 3.222 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.170 1.170 16 C -0.043 4.043 17 N -0.332 5.332 18 C 0.360 3.640 19 O -0.442 6.442 20 C -0.189 4.189 21 C -0.053 4.053 22 C -0.189 4.189 23 C 0.257 3.743 24 F -0.185 7.185 25 F -0.194 7.194 26 C -0.041 4.041 27 C -0.167 4.167 28 C 0.127 3.873 29 F -0.110 7.110 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.206 0.794 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.198 0.802 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.421 5.608 15.406 19.981 hybrid contribution -0.059 -0.457 -0.891 1.003 sum -11.481 5.151 14.516 19.210 Atomic orbital electron populations 1.22067 0.93490 1.02428 1.03083 1.21704 0.95490 0.96134 0.83410 0.90434 1.22988 0.97047 0.99794 0.96408 1.21394 0.96423 0.87588 0.88842 0.92078 1.42525 1.12364 1.30030 1.52766 1.18943 0.89978 1.06109 1.21434 0.92545 1.25464 0.98794 0.98598 1.01955 1.69886 1.23868 1.22903 1.46366 0.85476 0.80329 0.77024 0.79326 1.20431 1.22744 1.16997 1.23365 0.94592 0.87653 0.98726 1.48506 1.51493 1.28560 1.04683 1.17889 0.80839 0.83387 0.81913 1.90761 1.39177 1.30544 1.83702 1.19898 1.08070 0.95119 0.95831 1.21273 0.93868 0.91614 0.98522 1.20628 1.05163 0.96004 0.97098 1.20757 0.88301 0.91061 0.74153 1.92989 1.55850 1.92055 1.77601 1.93068 1.96524 1.93352 1.36502 1.21344 0.92796 0.93357 0.96584 1.21437 1.01324 0.94568 0.99364 1.18085 0.97430 0.77530 0.94241 1.91544 1.92978 1.30561 1.95937 0.93070 0.89214 0.92402 0.87956 0.89199 0.79442 0.93368 0.91642 0.90641 0.83621 0.81313 0.80188 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.10 71.98 0.66 -2.91 16 2 C 0.14 3.55 3.48 45.34 0.16 3.71 16 3 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 4 C -0.12 -3.18 6.11 31.79 0.19 -2.99 16 5 C 0.17 5.75 3.69 46.39 0.17 5.92 16 6 H 0.06 2.26 8.13 -2.39 -0.02 2.24 16 7 N -0.73 -30.96 5.08 -316.37 -1.61 -32.57 16 8 C -0.23 -12.52 10.47 84.03 0.88 -11.64 16 9 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 10 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 11 N -0.98 -61.07 13.97 21.65 0.30 -60.77 16 12 Si 0.95 42.97 27.73 68.60 1.90 44.87 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.25 -9.72 6.52 99.48 0.65 -9.07 16 16 C 0.08 2.63 4.82 86.86 0.42 3.04 16 17 N -0.60 -18.07 3.06 -791.60 -2.43 -20.49 16 18 C 0.57 18.52 7.25 86.74 0.63 19.15 16 19 O -0.56 -20.96 15.02 -3.95 -0.06 -21.02 16 20 C -0.19 -5.22 5.53 -20.05 -0.11 -5.33 16 21 C -0.03 -0.85 7.25 22.52 0.16 -0.69 16 22 C -0.19 -3.75 5.73 -19.90 -0.11 -3.87 16 23 C 0.31 5.85 5.65 71.24 0.40 6.25 16 24 F -0.20 -4.26 16.48 44.97 0.74 -3.52 16 25 F -0.21 -6.10 16.47 44.97 0.74 -5.36 16 26 C -0.02 -0.35 9.39 22.31 0.21 -0.14 16 27 C -0.15 -2.52 10.01 22.28 0.22 -2.30 16 28 C 0.15 3.74 7.24 22.67 0.16 3.90 16 29 F -0.13 -3.86 16.13 44.97 0.73 -3.13 16 30 H 0.05 1.40 6.76 -2.39 -0.02 1.39 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.14 7.70 -2.39 -0.02 2.12 16 35 H 0.37 14.76 5.57 -92.70 -0.52 14.25 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.07 2.26 6.59 -2.39 -0.02 2.24 16 38 H 0.08 2.39 7.23 -2.39 -0.02 2.37 16 39 H 0.15 3.80 4.95 -2.91 -0.01 3.79 16 40 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.18 1.56 7.60 -2.91 -0.02 1.54 16 42 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -73.38 355.57 5.34 -68.04 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.51 Total: 24.53 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.51 Total: 9.42 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -3.73 Total: -113.83 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 9 Polarization: -14.22 SS G_CDS: 2.21 Total: -12.01 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.90 Total: 44.87 kcal Total: -73.38 5.34 -68.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988850292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.180 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds