Wall clock time and date at job start Wed Apr 1 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.99428 * 2 1 4 4 C 1.54328 * 109.99381 * 238.95445 * 2 1 3 5 5 C 1.55153 * 103.02305 * 218.66447 * 4 2 1 6 6 H 1.09000 * 111.03990 * 153.39578 * 5 4 2 7 7 N 1.46498 * 111.00718 * 277.23495 * 5 4 2 8 8 C 1.36939 * 120.00201 * 198.64678 * 7 5 4 9 9 H 1.07998 * 119.99880 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99980 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00038 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99845 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47260 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46761 * 120.00084 * 12 10 8 15 15 H 1.48500 * 109.47214 * 239.99942 * 12 10 8 16 16 C 1.54917 * 101.57952 * 35.31122 * 5 4 2 17 17 N 1.47028 * 109.87724 * 121.08942 * 2 1 3 18 18 C 1.34772 * 125.65055 * 298.39264 * 17 2 1 19 19 O 1.21546 * 120.00134 * 185.94753 * 18 17 2 20 20 C 1.47854 * 119.99979 * 5.95036 * 18 17 2 21 21 C 1.39598 * 120.13332 * 163.75362 * 20 18 17 22 22 C 1.37942 * 119.90137 * 180.02562 * 21 20 18 23 23 C 1.38337 * 120.17800 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.86667 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.47331 * 119.97752 * 24 23 22 26 26 F 1.39908 * 109.47230 * 239.97952 * 24 23 22 27 27 C 1.38545 * 120.26882 * 359.97438 * 23 22 21 28 28 F 1.35098 * 119.95646 * 179.97438 * 27 23 22 29 29 C 1.38214 * 120.09055 * 0.24785 * 27 23 22 30 30 H 1.08995 * 109.47431 * 278.78775 * 1 2 3 31 31 H 1.09005 * 109.46874 * 38.79573 * 1 2 3 32 32 H 1.09003 * 109.46945 * 158.78754 * 1 2 3 33 33 H 1.09003 * 110.85067 * 100.19927 * 4 2 1 34 34 H 1.08999 * 110.67097 * 337.05229 * 4 2 1 35 35 H 0.97000 * 120.00184 * 18.65239 * 7 5 4 36 36 H 0.96998 * 120.00102 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.36344 * 204.15270 * 16 5 4 38 38 H 1.08996 * 110.36504 * 81.82531 * 16 5 4 39 39 H 1.07997 * 120.04903 * 0.03983 * 21 20 18 40 40 H 1.08004 * 119.90607 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47198 * 359.97438 * 24 23 22 42 42 H 1.07999 * 120.08572 * 179.72749 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2425 5 6 3.2864 -1.5184 -0.6912 6 1 3.4814 -2.4157 -1.2785 7 7 4.4699 -0.6562 -0.6461 8 6 5.7189 -1.2115 -0.5629 9 1 5.8314 -2.2852 -0.5309 10 6 6.8403 -0.3945 -0.5197 11 7 6.7031 0.9139 -0.5581 12 14 8.5439 -1.1521 -0.4054 13 1 8.4266 -2.6321 -0.3766 14 1 9.3478 -0.7426 -1.5849 15 1 9.2117 -0.6838 0.8356 16 6 2.8098 -1.8825 0.7372 17 7 2.0299 -0.7140 1.1841 18 6 1.8073 -0.3618 2.4658 19 8 2.3592 -0.9637 3.3661 20 6 0.8915 0.7565 2.7768 21 6 0.3917 0.9140 4.0707 22 6 -0.4628 1.9588 4.3554 23 6 -0.8260 2.8505 3.3621 24 6 -1.7595 3.9898 3.6811 25 9 -1.1186 5.2053 3.4185 26 9 -2.9080 3.8875 2.8887 27 6 -0.3343 2.7011 2.0755 28 9 -0.6936 3.5753 1.1102 29 6 0.5189 1.6555 1.7768 30 1 -0.3634 0.1570 1.0155 31 1 -0.3633 0.8010 -0.6439 32 1 -0.3633 -0.9581 -0.3719 33 1 2.3598 -0.0452 -2.0191 34 1 1.3067 -1.4407 -1.6224 35 1 4.3689 0.3081 -0.6752 36 1 7.4867 1.4848 -0.5276 37 1 3.6655 -2.0410 1.3936 38 1 2.1801 -2.7717 0.7118 39 1 0.6738 0.2189 4.8476 40 1 -0.8498 2.0804 5.3563 41 1 -2.0393 3.9465 4.7336 42 1 0.8987 1.5366 0.7728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989443014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:37 Heat of formation + Delta-G solvation = -120.471327 kcal Electronic energy + Delta-G solvation = -30516.429128 eV Core-core repulsion = 25854.717353 eV Total energy + Delta-G solvation = -4661.711776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.41082 -49.73483 -48.02800 -42.05405 -39.79055 -38.85223 -36.22955 -34.31711 -32.94956 -32.59046 -31.66661 -30.20148 -27.94375 -26.80150 -25.77721 -24.46759 -24.01622 -22.82181 -21.61057 -20.77231 -19.35230 -19.12342 -18.60955 -18.33400 -18.29179 -17.70952 -17.24763 -16.84132 -16.77738 -16.47286 -16.34608 -16.08186 -15.56591 -15.40433 -14.92640 -14.83974 -14.56992 -14.52745 -14.40164 -14.38692 -14.10971 -13.61529 -13.44194 -13.36077 -13.23603 -13.07374 -12.87811 -12.73746 -12.62274 -12.31681 -12.24111 -12.12261 -11.97691 -11.64243 -11.57607 -11.16035 -11.04024 -10.31095 -9.93536 -9.74835 -9.02119 -7.97916 -5.26102 -0.67734 -0.04513 1.44747 1.46354 1.49359 1.55268 1.85887 2.39670 2.53334 2.54722 2.86349 3.13125 3.25713 3.30673 3.42708 3.52851 3.70855 3.82121 3.91237 3.94599 3.96389 4.04300 4.08288 4.22925 4.33065 4.46192 4.58238 4.62443 4.70350 4.74545 4.77583 4.90671 4.93449 4.97804 5.02792 5.13466 5.17876 5.28998 5.36203 5.50321 5.51586 6.24356 6.43215 6.95869 7.31282 8.05447 8.26795 9.25385 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.002974 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.434111 B = 9412.177980 C = 9588.882106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.157 3.843 6 H 0.085 0.915 7 N -0.725 5.725 8 C -0.238 4.238 9 H 0.079 0.921 10 C -0.074 4.074 11 N -0.968 5.968 12 Si 0.967 3.033 13 H -0.264 1.264 14 H -0.291 1.291 15 H -0.301 1.301 16 C 0.083 3.917 17 N -0.592 5.592 18 C 0.560 3.440 19 O -0.578 6.578 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.048 4.048 23 C -0.188 4.188 24 C 0.310 3.690 25 F -0.211 7.211 26 F -0.208 7.208 27 C 0.104 3.896 28 F -0.135 7.135 29 C -0.145 4.145 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.198 0.802 41 H 0.182 0.818 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 2.160 7.133 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.091 0.909 4 C -0.160 4.160 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.363 5.363 8 C -0.370 4.370 9 H 0.097 0.903 10 C -0.266 4.266 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.228 1.228 16 C -0.042 4.042 17 N -0.322 5.322 18 C 0.350 3.650 19 O -0.460 6.460 20 C -0.102 4.102 21 C -0.096 4.096 22 C -0.065 4.065 23 C -0.190 4.190 24 C 0.257 3.743 25 F -0.193 7.193 26 F -0.189 7.189 27 C 0.084 3.916 28 F -0.113 7.113 29 C -0.163 4.163 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.204 0.796 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.171 0.829 40 H 0.215 0.785 41 H 0.199 0.801 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.740 1.776 7.564 24.031 hybrid contribution 1.545 0.434 -0.335 1.639 sum -21.195 2.210 7.230 22.503 Atomic orbital electron populations 1.22774 0.92201 1.04683 1.03330 1.22121 0.95658 0.95702 0.85203 0.90909 1.23059 0.97140 1.00190 0.95567 1.21660 0.86589 0.94804 0.92229 0.89728 1.42494 1.01197 1.05153 1.87502 1.19655 0.84688 0.92177 1.40483 0.90296 1.25508 1.01501 0.95815 1.03790 1.69807 1.29212 1.03302 1.59514 0.85154 0.80484 0.78216 0.76420 1.18841 1.21851 1.22844 1.23180 0.94335 0.87857 0.98819 1.48423 1.50705 1.28358 1.04748 1.18247 0.81575 0.83629 0.81581 1.90743 1.52140 1.56797 1.46329 1.19833 0.98912 0.95811 0.95683 1.21526 0.94943 0.98303 0.94786 1.21218 0.94550 0.90574 1.00193 1.21039 1.03262 1.00954 0.93731 1.20957 0.77728 0.78016 0.97633 1.93019 1.82697 1.47615 1.95941 1.93016 1.51515 1.96042 1.78336 1.17463 0.98537 0.89575 0.86014 1.91540 1.90205 1.67291 1.62276 1.22696 0.97339 0.93032 1.03239 0.91512 0.89344 0.89906 0.89516 0.86402 0.79559 0.94184 0.94022 0.89549 0.82868 0.78486 0.80084 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 7.74 71.98 0.56 -2.75 16 2 C 0.12 3.04 2.73 45.34 0.12 3.16 16 3 H 0.07 2.11 6.21 -2.39 -0.01 2.10 16 4 C -0.12 -3.09 6.04 31.78 0.19 -2.90 16 5 C 0.16 5.52 3.69 46.39 0.17 5.69 16 6 H 0.08 2.80 8.13 -2.39 -0.02 2.78 16 7 N -0.72 -34.66 5.27 -316.37 -1.67 -36.32 16 8 C -0.24 -12.89 9.98 84.03 0.84 -12.06 16 9 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 10 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 11 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 12 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 16 C 0.08 2.94 6.63 86.86 0.58 3.51 16 17 N -0.59 -19.55 3.06 -791.41 -2.42 -21.98 16 18 C 0.56 19.76 7.60 86.79 0.66 20.41 16 19 O -0.58 -24.68 16.69 -3.86 -0.06 -24.74 16 20 C -0.10 -2.70 5.04 -20.09 -0.10 -2.80 16 21 C -0.08 -1.58 9.59 22.53 0.22 -1.37 16 22 C -0.05 -0.64 9.65 22.22 0.21 -0.43 16 23 C -0.19 -3.31 5.38 -19.77 -0.11 -3.42 16 24 C 0.31 4.42 5.15 71.24 0.37 4.79 16 25 F -0.21 -4.34 17.06 44.97 0.77 -3.58 16 26 F -0.21 -3.90 17.06 44.97 0.77 -3.13 16 27 C 0.10 2.42 7.12 22.34 0.16 2.58 16 28 F -0.13 -3.50 16.43 44.97 0.74 -2.76 16 29 C -0.14 -3.63 6.28 22.58 0.14 -3.48 16 30 H 0.07 1.39 4.46 -2.39 -0.01 1.38 16 31 H 0.09 1.42 8.08 -2.38 -0.02 1.40 16 32 H 0.08 1.33 7.61 -2.39 -0.02 1.31 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.12 2.14 7.52 -2.39 -0.02 2.12 16 35 H 0.37 19.37 7.82 -92.71 -0.72 18.65 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.04 1.83 7.98 -2.39 -0.02 1.82 16 38 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.15 3.03 7.74 -2.91 -0.02 3.00 16 40 H 0.20 0.60 7.94 -2.91 -0.02 0.57 16 41 H 0.18 0.56 7.87 -2.39 -0.02 0.54 16 42 H 0.18 4.42 2.51 -2.91 -0.01 4.41 16 Total: -1.00 -76.37 353.92 5.28 -71.09 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.37 Total: 24.65 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.48 Total: 7.19 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -3.81 Total: -117.22 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 2.27 Total: -9.47 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.37 5.28 -71.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989443014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.381 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds