Wall clock time and date at job start Wed Apr 1 2020 02:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99849 * 2 1 4 4 C 1.54323 * 109.88364 * 121.09691 * 2 1 3 5 5 C 1.55160 * 102.93953 * 141.60760 * 4 2 1 6 6 H 1.09000 * 111.03723 * 206.40472 * 5 4 2 7 7 N 1.46510 * 111.00194 * 82.57440 * 5 4 2 8 8 C 1.36935 * 119.99579 * 161.34676 * 7 5 4 9 9 H 1.07993 * 120.00431 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99219 * 180.27710 * 8 7 5 11 11 N 1.31615 * 120.00270 * 359.71959 * 10 8 7 12 12 Si 1.86804 * 119.99515 * 179.72711 * 10 8 7 13 13 H 1.48497 * 109.47316 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47112 * 120.00054 * 12 10 8 15 15 H 1.48500 * 109.47069 * 239.99827 * 12 10 8 16 16 C 1.54906 * 101.58632 * 324.50045 * 5 4 2 17 17 N 1.47024 * 109.88003 * 238.90801 * 2 1 3 18 18 C 1.34774 * 125.65342 * 61.60544 * 17 2 1 19 19 O 1.21547 * 120.00612 * 173.81517 * 18 17 2 20 20 C 1.47856 * 119.99294 * 353.81448 * 18 17 2 21 21 C 1.39601 * 120.12722 * 196.97602 * 20 18 17 22 22 C 1.37946 * 119.90256 * 180.02562 * 21 20 18 23 23 C 1.38336 * 120.17295 * 0.02562 * 22 21 20 24 24 C 1.50699 * 119.86543 * 179.97438 * 23 22 21 25 25 F 1.39903 * 109.47216 * 300.00129 * 24 23 22 26 26 F 1.39903 * 109.47520 * 60.00013 * 24 23 22 27 27 C 1.38552 * 120.27326 * 359.97438 * 23 22 21 28 28 F 1.35101 * 119.95740 * 180.02562 * 27 23 22 29 29 C 1.38217 * 120.08481 * 359.72468 * 27 23 22 30 30 H 1.09000 * 109.46924 * 197.46351 * 1 2 3 31 31 H 1.09000 * 109.47183 * 317.46530 * 1 2 3 32 32 H 1.08997 * 109.47534 * 77.46549 * 1 2 3 33 33 H 1.08998 * 110.72341 * 23.25098 * 4 2 1 34 34 H 1.08994 * 110.71915 * 259.97281 * 4 2 1 35 35 H 0.97000 * 119.99750 * 341.35160 * 7 5 4 36 36 H 0.97001 * 119.99797 * 180.02562 * 11 10 8 37 37 H 1.09000 * 110.37065 * 155.84527 * 16 5 4 38 38 H 1.08994 * 110.36388 * 278.06196 * 16 5 4 39 39 H 1.07995 * 120.05050 * 359.97438 * 21 20 18 40 40 H 1.08001 * 119.90955 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47697 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.08320 * 180.29821 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 3.2876 -1.5143 0.6922 6 1 3.4859 -2.4110 1.2792 7 7 4.4675 -0.6468 0.6492 8 6 5.7189 -1.1966 0.5672 9 1 5.8361 -2.2697 0.5338 10 6 6.8370 -0.3748 0.5322 11 7 6.6941 0.9330 0.5724 12 14 8.5446 -1.1251 0.4280 13 1 8.4338 -2.6055 0.3966 14 1 9.2184 -0.6523 -0.8080 15 1 9.3392 -0.7137 1.6132 16 6 2.8145 -1.8794 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.8074 -0.3620 -2.4658 19 8 2.3627 -0.9610 -3.3659 20 6 0.8875 0.7530 -2.7770 21 6 0.3765 0.9003 -4.0677 22 6 -0.4810 1.9425 -4.3531 23 6 -0.8352 2.8422 -3.3638 24 6 -1.7720 3.9786 -3.6833 25 9 -1.2105 4.7784 -4.6845 26 9 -2.9946 3.4642 -4.1282 27 6 -0.3323 2.7029 -2.0803 28 9 -0.6829 3.5849 -1.1188 29 6 0.5227 1.6590 -1.7807 30 1 -0.3633 -0.9803 0.3084 31 1 -0.3633 0.7572 0.6947 32 1 -0.3634 0.2230 -1.0031 33 1 1.3052 -1.4460 1.6182 34 1 2.3529 -0.0460 2.0200 35 1 4.3621 0.3170 0.6789 36 1 7.4755 1.5072 0.5476 37 1 3.6716 -2.0337 -1.3925 38 1 2.1902 -2.7725 -0.7132 39 1 0.6527 0.1998 -4.8419 40 1 -0.8767 2.0564 -5.3515 41 1 -1.9349 4.5781 -2.7877 42 1 0.9109 1.5476 -0.7790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989443017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:51 Heat of formation + Delta-G solvation = -119.404846 kcal Electronic energy + Delta-G solvation = -30377.576909 eV Core-core repulsion = 25715.911380 eV Total energy + Delta-G solvation = -4661.665530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.35327 -49.95665 -48.07832 -42.05804 -39.79755 -38.85499 -36.21198 -34.28916 -32.94195 -32.62768 -31.73141 -30.14616 -28.07191 -26.77745 -25.78910 -24.36285 -24.10144 -22.83751 -21.60156 -20.78569 -19.36152 -19.17256 -18.65133 -18.43686 -18.34988 -17.73646 -17.24691 -16.86529 -16.79683 -16.47310 -16.32781 -16.07856 -15.57246 -15.38824 -15.00959 -14.78439 -14.55595 -14.51730 -14.44971 -14.40517 -14.23604 -13.68087 -13.55980 -13.42279 -13.23007 -13.06737 -12.88026 -12.72594 -12.57419 -12.28783 -12.20280 -12.11245 -12.00155 -11.63768 -11.56820 -11.17031 -11.03516 -10.34003 -9.95554 -9.74266 -9.00843 -7.97286 -5.24942 -0.71728 -0.09008 1.45060 1.46704 1.47084 1.55483 1.85005 2.35476 2.43871 2.53895 2.80143 3.03292 3.22825 3.31129 3.42255 3.54221 3.60744 3.83516 3.84303 3.90447 3.95019 4.01810 4.06024 4.24983 4.32169 4.45692 4.53642 4.65675 4.71433 4.72009 4.76876 4.87353 4.94413 4.99226 5.02459 5.16006 5.20270 5.32896 5.36906 5.45336 5.52662 6.25356 6.43850 6.95924 7.32544 8.06841 8.28190 9.25886 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.002909 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.218867 B = 9622.756281 C = 9859.671077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.157 3.843 6 H 0.084 0.916 7 N -0.724 5.724 8 C -0.238 4.238 9 H 0.078 0.922 10 C -0.073 4.073 11 N -0.966 5.966 12 Si 0.966 3.034 13 H -0.265 1.265 14 H -0.301 1.301 15 H -0.291 1.291 16 C 0.083 3.917 17 N -0.591 5.591 18 C 0.560 3.440 19 O -0.580 6.580 20 C -0.096 4.096 21 C -0.074 4.074 22 C -0.060 4.060 23 C -0.183 4.183 24 C 0.316 3.684 25 F -0.202 7.202 26 F -0.199 7.199 27 C 0.121 3.879 28 F -0.123 7.123 29 C -0.137 4.137 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.374 0.626 36 H 0.249 0.751 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.151 0.849 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 3.402 -2.834 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.011 3.989 3 H 0.096 0.904 4 C -0.158 4.158 5 C 0.047 3.953 6 H 0.102 0.898 7 N -0.363 5.363 8 C -0.370 4.370 9 H 0.096 0.904 10 C -0.265 4.265 11 N -0.617 5.617 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.229 1.229 15 H -0.218 1.218 16 C -0.043 4.043 17 N -0.321 5.321 18 C 0.350 3.650 19 O -0.462 6.462 20 C -0.100 4.100 21 C -0.093 4.093 22 C -0.078 4.078 23 C -0.185 4.185 24 C 0.263 3.737 25 F -0.183 7.183 26 F -0.180 7.180 27 C 0.101 3.899 28 F -0.101 7.101 29 C -0.155 4.155 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.165 0.835 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.442 2.999 -3.333 22.885 hybrid contribution 1.495 0.217 -0.371 1.556 sum -20.947 3.216 -3.704 21.514 Atomic orbital electron populations 1.22827 0.92065 1.04892 1.03556 1.22179 0.95841 0.95857 0.85004 0.90390 1.23049 0.96931 1.00221 0.95639 1.21661 0.86754 0.94799 0.92104 0.89847 1.42485 1.01146 1.05187 1.87484 1.19636 0.84702 0.92159 1.40460 0.90420 1.25482 1.01397 0.95824 1.03843 1.69795 1.29276 1.03096 1.59517 0.85181 0.80659 0.78178 0.76410 1.18957 1.22917 1.21818 1.23179 0.94228 0.87965 0.98891 1.48417 1.50511 1.28505 1.04711 1.18218 0.81615 0.83546 0.81661 1.90750 1.52134 1.56826 1.46502 1.19786 0.98766 0.96036 0.95376 1.21403 0.94777 0.97976 0.95173 1.21027 0.95179 0.91702 0.99926 1.20740 1.03204 1.00562 0.94031 1.20419 0.76915 0.87066 0.89300 1.93027 1.85543 1.74633 1.65096 1.93025 1.45318 1.88300 1.91333 1.17013 0.98321 0.89525 0.85044 1.91545 1.90335 1.66300 1.61913 1.22694 0.97023 0.92621 1.03125 0.90200 0.88511 0.91421 0.86433 0.89273 0.79436 0.94182 0.94194 0.89657 0.83515 0.81645 0.83241 0.79886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 7.79 71.98 0.56 -2.39 16 2 C 0.11 2.76 2.73 45.34 0.12 2.88 16 3 H 0.08 2.04 6.19 -2.39 -0.01 2.02 16 4 C -0.12 -2.87 6.04 31.78 0.19 -2.68 16 5 C 0.16 5.36 3.69 46.38 0.17 5.53 16 6 H 0.08 2.71 8.13 -2.39 -0.02 2.69 16 7 N -0.72 -33.92 5.27 -316.36 -1.67 -35.59 16 8 C -0.24 -12.72 9.98 84.03 0.84 -11.88 16 9 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 10 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 11 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16 12 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 15 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 16 C 0.08 2.87 6.63 86.85 0.58 3.44 16 17 N -0.59 -18.98 3.07 -791.42 -2.43 -21.40 16 18 C 0.56 19.65 7.61 86.79 0.66 20.31 16 19 O -0.58 -25.09 16.70 -3.86 -0.06 -25.16 16 20 C -0.10 -2.61 5.06 -20.09 -0.10 -2.71 16 21 C -0.07 -1.73 9.59 22.53 0.22 -1.51 16 22 C -0.06 -1.12 9.57 22.22 0.21 -0.91 16 23 C -0.18 -3.35 5.38 -19.77 -0.11 -3.46 16 24 C 0.32 4.86 5.43 71.24 0.39 5.25 16 25 F -0.20 -3.76 17.25 44.97 0.78 -2.99 16 26 F -0.20 -3.39 17.25 44.97 0.78 -2.62 16 27 C 0.12 2.35 7.24 22.34 0.16 2.52 16 28 F -0.12 -2.17 16.17 44.97 0.73 -1.45 16 29 C -0.14 -3.08 6.21 22.57 0.14 -2.94 16 30 H 0.08 1.16 7.70 -2.39 -0.02 1.15 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.26 4.27 -2.39 -0.01 1.25 16 33 H 0.12 1.97 7.57 -2.39 -0.02 1.95 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.37 18.91 7.82 -92.71 -0.72 18.18 16 36 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.04 1.75 7.98 -2.39 -0.02 1.73 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.15 3.41 7.75 -2.91 -0.02 3.39 16 40 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.15 1.54 7.11 -2.39 -0.02 1.53 16 42 H 0.18 3.96 2.61 -2.91 -0.01 3.95 16 Total: -1.00 -71.10 353.85 5.31 -65.80 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.37 Total: 25.48 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.50 Total: 7.77 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -3.81 Total: -115.01 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 9 Polarization: -9.33 SS G_CDS: 2.28 Total: -7.05 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -71.10 5.31 -65.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989443017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.609 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds