Wall clock time and date at job start Wed Apr 1 2020 02:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.00321 * 2 1 4 4 C 1.54337 * 109.99352 * 238.96344 * 2 1 3 5 5 C 1.55157 * 103.02288 * 218.66992 * 4 2 1 6 6 H 1.09000 * 111.03517 * 277.21576 * 5 4 2 7 7 N 1.46500 * 111.00604 * 153.37712 * 5 4 2 8 8 C 1.36934 * 119.99724 * 161.34731 * 7 5 4 9 9 H 1.08003 * 120.00351 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99687 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99917 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99646 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47351 * 60.00151 * 12 10 8 14 14 H 1.48498 * 109.46715 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46922 * 299.99664 * 12 10 8 16 16 C 1.54912 * 101.58210 * 35.30385 * 5 4 2 17 17 N 1.47029 * 109.88083 * 121.09831 * 2 1 3 18 18 C 1.34771 * 125.64759 * 298.38844 * 17 2 1 19 19 O 1.21287 * 119.99914 * 359.72083 * 18 17 2 20 20 C 1.50697 * 120.00258 * 179.71740 * 18 17 2 21 21 C 1.50698 * 109.47158 * 180.02562 * 20 18 17 22 22 C 1.38249 * 119.97953 * 265.25585 * 21 20 18 23 23 C 1.38360 * 120.02281 * 180.25765 * 22 21 20 24 24 F 1.35104 * 120.00648 * 179.74027 * 23 22 21 25 25 C 1.38680 * 119.98115 * 359.46951 * 23 22 21 26 26 F 1.35101 * 120.02333 * 180.29973 * 25 23 22 27 27 C 1.38357 * 119.95961 * 0.27604 * 25 23 22 28 28 C 1.38424 * 119.97714 * 85.00556 * 21 20 18 29 29 F 1.35097 * 119.99272 * 359.97438 * 28 21 20 30 30 H 1.08996 * 109.46824 * 300.35821 * 1 2 3 31 31 H 1.09006 * 109.47125 * 60.35625 * 1 2 3 32 32 H 1.08998 * 109.47176 * 180.35514 * 1 2 3 33 33 H 1.08995 * 110.85098 * 100.19823 * 4 2 1 34 34 H 1.09002 * 110.66434 * 337.04714 * 4 2 1 35 35 H 0.96999 * 120.00228 * 341.35235 * 7 5 4 36 36 H 0.97005 * 120.00000 * 180.02562 * 11 10 8 37 37 H 1.09001 * 110.36854 * 204.15493 * 16 5 4 38 38 H 1.08996 * 110.46229 * 81.88054 * 16 5 4 39 39 H 1.08999 * 109.46729 * 60.00161 * 20 18 17 40 40 H 1.08999 * 109.47189 * 300.00540 * 20 18 17 41 41 H 1.08004 * 119.98604 * 359.97438 * 22 21 20 42 42 H 1.07996 * 120.01306 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 4.1674 -0.8775 -0.6579 7 7 3.5475 -2.7243 -1.4813 8 6 4.7733 -3.3314 -1.4190 9 1 5.5475 -2.9214 -0.7874 10 6 5.0210 -4.4737 -2.1679 11 7 4.0773 -4.9736 -2.9372 12 14 6.6930 -5.3022 -2.0824 13 1 6.9660 -5.7233 -0.6847 14 1 6.7007 -6.4940 -2.9683 15 1 7.7413 -4.3484 -2.5258 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1475 0.6238 2.7180 20 6 2.3783 -1.1934 3.5855 21 6 1.9864 -0.5898 4.9095 22 6 2.8459 0.2809 5.5532 23 6 2.4892 0.8315 6.7714 24 9 3.3316 1.6783 7.4028 25 6 1.2644 0.5183 7.3415 26 9 0.9127 1.0602 8.5280 27 6 0.4025 -0.3490 6.6940 28 6 0.7638 -0.9035 5.4778 29 9 -0.0777 -1.7501 4.8451 30 1 -0.3633 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.3598 -0.0450 -2.0191 34 1 1.3067 -1.4405 -1.6225 35 1 2.8521 -3.0927 -2.0484 36 1 4.2502 -5.7721 -3.4602 37 1 3.6654 -2.0413 1.3933 38 1 2.1806 -2.7722 0.7133 39 1 3.4650 -1.2161 3.5035 40 1 1.9878 -2.2089 3.5197 41 1 3.7980 0.5279 5.1072 42 1 -0.5517 -0.5932 7.1370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989486393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:12 Heat of formation + Delta-G solvation = -130.345250 kcal Electronic energy + Delta-G solvation = -29520.226603 eV Core-core repulsion = 24858.086662 eV Total energy + Delta-G solvation = -4662.139941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.83175 -49.30770 -48.89950 -40.26717 -39.06261 -37.39248 -34.27606 -33.24294 -31.67447 -31.40453 -30.70721 -28.52339 -27.65682 -25.50793 -24.04558 -23.82163 -22.89464 -21.43187 -20.35509 -18.88408 -18.59072 -18.26397 -17.59405 -17.42716 -17.04112 -16.67356 -16.16104 -16.00942 -15.70753 -15.30044 -15.14079 -15.01279 -14.74141 -14.69609 -14.30240 -14.10870 -13.70577 -13.43820 -13.35448 -13.06297 -12.76551 -12.64202 -12.47406 -12.25996 -12.01617 -11.93632 -11.79333 -11.69304 -11.19771 -11.06122 -10.82344 -10.70193 -10.39825 -10.10275 -9.88401 -9.80840 -9.46719 -9.09321 -8.88291 -8.44654 -7.17196 -5.92053 -3.23530 0.36164 0.45676 2.66851 2.69034 3.16841 3.27080 3.34847 3.40149 3.41074 3.62402 3.98089 4.02323 4.13445 4.43152 4.54030 4.61113 4.94604 5.01131 5.06736 5.12783 5.17346 5.19314 5.30829 5.37183 5.42886 5.49987 5.56889 5.63305 5.67787 5.71809 5.76731 6.02762 6.05384 6.11582 6.27529 6.28702 6.39070 6.39600 6.57238 6.76716 7.55332 7.69652 8.22533 8.26062 9.37302 9.90532 10.25213 11.29714 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.002576 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.846443 B =10867.499440 C =11750.272716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.136 4.136 5 C 0.173 3.827 6 H 0.065 0.935 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.285 1.285 16 C 0.070 3.930 17 N -0.607 5.607 18 C 0.531 3.469 19 O -0.545 6.545 20 C -0.103 4.103 21 C -0.074 4.074 22 C -0.084 4.084 23 C 0.060 3.940 24 F -0.124 7.124 25 C 0.096 3.904 26 F -0.122 7.122 27 C -0.163 4.163 28 C 0.139 3.861 29 F -0.121 7.121 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.388 0.612 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.157 0.843 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 9.596 16.506 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.083 0.917 7 N -0.352 5.352 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.056 4.056 17 N -0.340 5.340 18 C 0.318 3.682 19 O -0.424 6.424 20 C -0.142 4.142 21 C -0.075 4.075 22 C -0.102 4.102 23 C 0.040 3.960 24 F -0.103 7.103 25 C 0.075 3.925 26 F -0.100 7.100 27 C -0.182 4.182 28 C 0.119 3.881 29 F -0.099 7.099 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.175 0.825 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.367 10.067 16.735 20.542 hybrid contribution 0.595 -0.675 0.094 0.905 sum -5.773 9.392 16.829 20.118 Atomic orbital electron populations 1.22122 0.95080 1.02240 1.02420 1.21514 0.94260 0.96067 0.84537 0.90974 1.23005 0.99051 0.99659 0.95801 1.21271 0.94629 0.89428 0.88607 0.91737 1.42314 1.14287 1.27573 1.51033 1.19183 0.90260 1.06375 1.22437 0.90990 1.24777 0.97932 0.98434 0.99220 1.69644 1.32540 1.24118 1.31270 0.86261 0.83551 0.78894 0.77402 1.21100 1.21624 1.21117 1.23570 0.94554 0.87480 0.99964 1.48614 1.52103 1.28903 1.04407 1.19863 0.80644 0.85222 0.82423 1.90691 1.40547 1.27708 1.83430 1.20632 1.04031 1.00657 0.88910 1.19274 0.93040 0.98546 0.96669 1.20800 1.01379 0.95560 0.92495 1.17519 0.88699 0.95900 0.93880 1.91553 1.69398 1.67984 1.81351 1.17201 0.93342 0.97966 0.83968 1.91558 1.91871 1.83965 1.42638 1.20885 1.01990 0.99707 0.95658 1.17046 0.88164 0.91766 0.91096 1.91562 1.69633 1.67519 1.81173 0.91630 0.91883 0.92498 0.90258 0.90317 0.77797 0.93207 0.91178 0.91009 0.86682 0.86882 0.82503 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.11 37.16 0.34 -1.77 16 2 C 0.14 1.93 3.46 -66.94 -0.23 1.70 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.99 6.11 -24.89 -0.15 -2.14 16 5 C 0.17 2.99 3.69 -65.78 -0.24 2.75 16 6 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 7 N -0.71 -15.93 5.28 -51.35 -0.27 -16.20 16 8 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 9 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 12 Si 0.91 20.95 29.55 -169.99 -5.02 15.92 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.07 1.07 6.38 -2.53 -0.02 1.05 16 17 N -0.61 -8.62 3.06 -163.00 -0.50 -9.12 16 18 C 0.53 7.46 7.63 -10.99 -0.08 7.38 16 19 O -0.55 -9.11 15.08 5.55 0.08 -9.03 16 20 C -0.10 -1.10 4.61 -29.04 -0.13 -1.23 16 21 C -0.07 -0.78 4.38 -104.55 -0.46 -1.24 16 22 C -0.08 -0.81 9.66 -39.53 -0.38 -1.19 16 23 C 0.06 0.63 7.31 -39.37 -0.29 0.34 16 24 F -0.12 -1.37 17.18 2.25 0.04 -1.34 16 25 C 0.10 0.98 7.31 -39.37 -0.29 0.69 16 26 F -0.12 -1.30 17.18 2.25 0.04 -1.26 16 27 C -0.16 -1.54 10.00 -39.46 -0.39 -1.93 16 28 C 0.14 1.51 7.24 -39.43 -0.29 1.22 16 29 F -0.12 -1.43 16.56 2.25 0.04 -1.39 16 30 H 0.06 0.95 6.89 -51.93 -0.36 0.59 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.18 7.70 -51.93 -0.40 0.78 16 35 H 0.39 9.32 7.71 -40.82 -0.31 9.01 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.12 0.98 7.76 -51.93 -0.40 0.58 16 40 H 0.11 1.13 7.79 -51.93 -0.40 0.73 16 41 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -29.50 367.05 -7.40 -36.90 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.20 Total: 6.70 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.86 Total: -1.15 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.05 Total: -50.89 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.11 Total: -3.99 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.50 -7.40 -36.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989486393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.448 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds